Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0016140 | OGI:12024450 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:20639341-20645143 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatagagctggtgtagttaccagaatttgtgcatgtttcttcttttcttcaaggcagtcttgtgcttctttcacgagcgaattgaaaggcttagttgtgctatggtcgctactagagaacatcattaagccttccagttccaacatgttatcggaagccttagacagagattccaacaagctctctacctctgcttggacatagcctccgttgagttttatcagtgatatgatcatcctactggtaatcttcattattctcaggcaattggcagttgcatcgctgtttccttctaccatcttcttgagctcccttggaaagctaaatgcagagtctcctgggacaattttatcagccagttgagtcaaagctgtatcatcagtgattgatttttcaaacaatgctgcactaagtgacagtaaagctgcatgcagtttcctgtccacaTttttgttattgatatcgtctttttgctcattaacgttgccttcatcttgcgaaacaacaggatctgggcctttttcagggtctggattttgtgccggaagcttggctccatctgtttccttttctgccttttctgttttcttttcttcttgctttggtggaaagagaagtatttctttgagcacctgaaacgacaaaattatgcttagtttgacagggatagagatgcaagatgcaatttaaataaaatgaacacaaatcccgtatttatttgactttttgaccactcaccattggcagcacatcattcaaggcttccgtcagttccttgaggtatccatctttctttgtgtatcgaatgtacaggtgctccaggatttcagatgcacttattctgtattctctgtccgtgttatcatctagaagcattttacagagatcacggacaacagtgtcctttgccttgatgatggcggccgcgctgctttcgctttggtcggacagcattgccagtgcttcacctgccaattgtctcttggaggcgtccttgttcttttcatcagtactagtgcttctagtgaagatgtgaaccagcagcttagtgaatttctccctgctctcggtgttgatgctcgaggatgcatccatgggcagctttgtgatgatcttgatggccagaatgtgtagcttctcgttgcattggttacacgtgaggattttctccatggtgttgatggcgcccttgttctcgaagatctgggaccgaagcgtgtcaccggtggttccgggggcagtgacaaggcggcacatgaattgcatcgacgcggctgagacgtcggaccatgtggcgtggtcgatgcagtggagcaggtcggcggtgacgggcgccatggccttggagaggatgccctggtcgttgtcgatgatgagcctgcggttgtgctcctcggcggcgagcttgtcgaggatgacaaggccgcacttcatgagcccgttgcagtgagcggacgaggcgctgtcgtcgtcgtcttgctgctcggtggtggtggtgtcgagcagcgacgatatgcaccggagcgcgttcgggaagctggcgaggctgatctcgccggcgaggctcgccacgatcctcgcggcgagcacccggatgtccctgttgtactggcttgacgaccggagcgagcgaagcagcctcttcatcaccttgctggaggacgcggagccgaccagcttcctgatcagagcgtgctgcccctgcagctcctcctgacccaggatcttgtccaggatcatcgcgccagacatgtagtcgccggacgacgacgacgactccggcttcatcagcgccacggcgaacttcaccatgttccttcctttggcgaacgatggatccttctcgcacccggtcttggtctcgcgcatgtacttcatcaccagcgcctgccccgcgtgatcgtccttgtcgaagccgtagtccatggctactaggcgggcgatccgtttgccggcgaagcgcgaagcgaggcggtagcagaagagcacaccctggaagagcaccagcgagtagagcacgttgagcgccggctccaggttggcgctgctgctgccgtcgccgtcggacattgcgtagtcgcgctgtatcaggcgccacagggacaggccggtggtgatgaacagcccggtgaggtagaacagcgccagagggcacagtatgacggcgaacaagagcagattgagagccagcaaaacgtatgccagcacaagccgtcgcccggacaacaagctagagtaatccttcatcagcatgcctgatatagtaccaccgaggccatagaaggatttcccaacgtgctgcagcttttctttcagaaaaacgtcgaacaccctgcggattatttgttacgacggttagaccagtccaagaatttagtcagaatgggagcaacgagaagaagatatttattctgttgccaacgttgaaaaatccagagttcacctatatactactctctctagccccaaaagaacACAATCCTAGCATTCAAAAGATACATTACTAGAAAAGTGAAATGACCTAAATATCCCTCATGACATGAGAGATTATTGGATGTGCGGGATGATTGGGGTAAGATGGGGAAAATTTTGAAGTAGTACTTTACAATTGCATTATTTTTGGGGTAAGTTTTGAATACTAGAAGTATTCTTTTTTTAAATAGAGGAAGTAAGTTAAACTTGTCATTACATTTTAATACAACCAAAGATTACAAAACTTCAGATATATACTATAAATCTATGTGACACGACATTTTTCTTCTCTTCAAATCATGCAAAATTTATGGTTCTTTGGTCTGAAATCGAACTGTCCAGATTCCCCCCTCCCCCCTCCCCCCTCccccctctactccattccaattgctacaactaaagcatgcctgacagcagtgtcgctctgcctctgctggcccatgccccacccccctcagccttgccggcttattccctggctccggtgccatgtgctaccgtcctcatccgtccccgccaaatcccactgctggatttgccaccacctcctcaccatctcctaactactttaatagcgagattcccccaccaccaacaccggcccaccatcttcctctctcctgcggacgacaaccaacgaccagctgctgagggggccgcttcttcggccatccctctaaataagagaagacattccacctccctatgtatgacccctcccccttcttctcccaccccaaccgaagttagtaagagcatctctagcaactcatccatcttgccctccatctgagatatagctcgttgaggatcaaaattgcactccagagaaattgccatcacatatgcccaatttggaaaccatccaaaccgacgccttcacatgccaaattttgcggccctccttcctcatgccaaatctcaactgccatctctacaaccccaccttttgccactagtcggatcccgttattcctccagaaccatctaccagccatgccccgtccttctcctatctaattctatatcgtcgTtttgggaagtagcggcaaggtgacaatgccatgagcagggttcaatcttccatttttgatatttgtatcgggaggtactgatatgtttgaaaatttggtcccgaaattatttgatattttaacaaaaatttgaaaaatttgaacaaatattaccaaattcaccaaaaaatggaaaaaatcaaaaagtttgaccgAaataatattgtggatagaggaattttgaaccctagtcatgagcccgagtgaaggtcgaggatatatagaaagagaatgggaatacttagatctagtgctagaggtagggctgtcaaaaaagctcgaggctcgtgagctattcgagctcgacttgttctaggctcgattcgaggcaagcccgagcttgtatcgagctcgagcctaggcaggcaagctcgctcgatctcggctcgttgacagctcttggtagaggcggcggaaggaggcaacgtgagggtgaaggcgtgacgtctgggtgactattttgcttagcttgctaggtcctaggctcctagctagttctgagatgcttggtcagaggatggctagggatgAaaacggagcggatatggacggataatgctcataccatattcgttttcatattttttaccggatacgaaacgaatacggatagctcgaatacggaaacaaatacggattatctcgaatacgaataataatcaaatatgatcggacacgaatacgtaaacaaaattttctcggaacacgaaaaccaactcaacttctaatagaaacAaatatcaacatatATAattagatcattttatataaaatgaggtatAatttataaatatttttaaaatttaaataatattaatagtatgaactagtgttaagagataaattactattaaaaatctataaaggtatattgaaggttatagagttagaaagaaatagggtatgtctcatgggtcctgcggatatccgaatagaactattcaccggatatccgaattattatccgtatccgtcggaaaccccgataccatatccgtatccgaactatccaagaattatccgattcgaaagatatccgtatccatttttgtccggagcggacggaaactatccgctcaattttcatccataaggatggcatctggtgggggcgtccctgatggcctgatcctatagcctctgttttgttttctttcgctaaactatctgtaatggaaacGggaaagaactgcctctctttctcaacAaaaagagaagaacttaaaagcatatactacaggtggctcataaagccactgacaggtggctcctaccgctgcattcggttgtggtaatcttatactctgccacaaccattcacatcactctctgctctcccttattgccagaggcggagttatgggctttggcaggtggtaggtaagcccagccggccaggcccaagtggggtcgcctctgcagccactggagatcgaaaacaacggatccagaagatatggacctggagtgtgctggtctactggacaaggaagagcttgaaggtcgagctacagtagtgttcttcatcgcagaacatcaggtgctctatggctgtatccttgccgattatatgtcgaactagctaatataggagaaatttcagaatatagcagcctagcgagctggcagctgcttcttcctcaacgatattgggagagagatagcacagtttgtagtgttaattgagtgtttccatgatccttcgctgggaaaaccacactttcaatatttattttatctgtgattttccacagtaaaaggactagtgacaaaaatccactactgcacttgctttctaacggcaatcactatgttcctagctactgaatatcttttgaaccactattcctactatccaaatgacatgaatttatcctgtgaaaatccttcgtatttagcaaaaaactattactgggaacactaagaatggtggggtaaaaaaatcatccgagtttgacgaaaagaaaaggcactagattaagcaggaaagctgcatgaggcagttaattaaatttattatagcaaaggtaaagcattctaacccagttgtctggacgagggtgatgatggtaagactccaaaagtccttcttcccgagcatggagacgaagccaccaagaagaacgacggtggtccatagaaccaccaggacgctaattcccttgacggccatcgacaagtaccccataaacagagcataactgttgatgttcaatacttcttcccagctggagtcgtcatcaagcttgtgaggcat
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| CDS seq | atgcctcacaagcttgatgacgactccagctgggaagaagtattgaacatcaacagttatgctctgtttatggggtacttgtcgatggccgtcaagggaattagcgtcctggtggttctatggaccaccgtcgttcttcttggtggcttcgtctccatgctcgggaagaaggacttttggagtcttaccatcatcaccctcgtccagacaactggggtgttcgacgtttttctgaaagaaaagctgcagcacgttgggaaatccttctatggcctcggtggtactatatcaggcatgctgatgaaggattactctagcttgttgtccgggcgacggcttgtgctggcatacgttttgctggctctcaatctgctcttgttcgccgtcatactgtgccctctggcgctgttctacctcaccgggctgttcatcaccaccggcctgtccctgtggcgcctgatacagcgcgactacgcaatgtccgacggcgacggcagcagcagcgccaacctggagccggcgctcaacgtgctctactcgctggtgctcttccagggtgtgctcttctgctaccgcctcgcttcgcgcttcgccggcaaacggatcgcccgcctagtagccatggactacggcttcgacaaggacgatcacgcggggcaggcgctggtgatgaagtacatgcgcgagaccaagaccgggtgcgagaaggatccatcgttcgccaaaggaaggaacatggtgaagttcgccgtggcgctgatgaagccggagtcgtcgtcgtcgtccggcgactacatgtctggcgcgatgatcctggacaagatcctgggtcaggaggagctgcaggggcagcacgctctgatcaggaagctggtcggctccgcgtcctccagcaaggtgatgaagaggctgcttcgctcgctccggtcgtcaagccagtacaacagggacatccgggtgctcgccgcgaggatcgtggcgagcctcgccggcgagatcagcctcgccagcttcccgaacgcgctccggtgcatatcgtcgctgctcgacaccaccaccaccgagcagcaagacgacgacgacagcgcctcgtccgctcactgcaacgggctcatgaagtgcggccttgtcatcctcgacaagctcgccgccgaggagcacaaccgcaggctcatcatcgacaacgaccagggcatcctctccaaggccatggcgcccgtcaccgccgacctgctccactgcatcgaccacgccacatggtccgacgtctcagccgcgtcgatgcaattcatgtgccgccttgtcactgcccccggaaccaccggtgacacgcttcggtcccagatcttcgagaacaagggcgccatcaacaccatggagaaaatcctcacgtgtaaccaatgcaacgagaagctacacattctggccatcaagatcatcacaaagctgcccatggatgcatcctcgagcatcaacaccgagagcagggagaaattcactaagctgctggttcacatcttcactagaagcactagtactgatgaaaagaacaaggacgcctccaagagacaattggcaggtgaagcactggcaatgctgtccgaccaaagcgaaagcagcgcggccgccatcatcaaggcaaaggacactgttgtccgtgatctctgtaaaatgcttctagatgataacacggacagagaatacagaataagtgcatctgaaatcctggagcacctgtacattcgatacacaaagaaagatggatacctcaaggaactgacggaagccttgaatgatgtgctgccaatggtgctcaaagaaatacttctctttccaccaaagcaagaagaaaagaaaacagaaaaggcagaaaaggaaacagatggagccaagcttccggcacaaaatccagaccctgaaaaaggcccagatcctgttgtttcgcaagatgaaggcaacgttaatgagcaaaaagacgatatcaataacaaaaAtgtggacaggaaactgcatgcagctttactgtcacttagtgcagcattgtttgaaaaatcaatcactgatgatacagctttgactcaactggctgataaaattgtcccaggagactctgcatttagctttccaagggagctcaagaagatggtagaaggaaacagcgatgcaactgccaattgcctgagaataatgaagattaccagtaggatgatcatatcactgataaaactcaacggaggctatgtccaagcagaggtagagagcttgttggaatctctgtctaaggcttccgataacatgttggaactggaaggcttaatgatgttctctagtagcgaccatagcacaactaagcctttcaattcgctcgtgaaagaagcacaagactgccttgaagaaaagaagaaacatgcacaaattctggtaactacaccagctctatga
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| Protein seq | MPHKLDDDSSWEEVLNINSYALFMGYLSMAVKGISVLVVLWTTVVLLGGFVSMLGKKDFWSLTIITLVQTTGVFDVFLKEKLQHVGKSFYGLGGTISGMLMKDYSSLLSGRRLVLAYVLLALNLLLFAVILCPLALFYLTGLFITTGLSLWRLIQRDYAMSDGDGSSSANLEPALNVLYSLVLFQGVLFCYRLASRFAGKRIARLVAMDYGFDKDDHAGQALVMKYMRETKTGCEKDPSFAKGRNMVKFAVALMKPESSSSSGDYMSGAMILDKILGQEELQGQHALIRKLVGSASSSKVMKRLLRSLRSSSQYNRDIRVLAARIVASLAGEISLASFPNALRCISSLLDTTTTEQQDDDDSASSAHCNGLMKCGLVILDKLAAEEHNRRLIIDNDQGILSKAMAPVTADLLHCIDHATWSDVSAASMQFMCRLVTAPGTTGDTLRSQIFENKGAINTMEKILTCNQCNEKLHILAIKIITKLPMDASSSINTESREKFTKLLVHIFTRSTSTDEKNKDASKRQLAGEALAMLSDQSESSAAAIIKAKDTVVRDLCKMLLDDNTDREYRISASEILEHLYIRYTKKDGYLKELTEALNDVLPMVLKEILLFPPKQEEKKTEKAEKETDGAKLPAQNPDPEKGPDPVVSQDEGNVNEQKDDINNKNVDRKLHAALLSLSAALFEKSITDDTALTQLADKIVPGDSAFSFPRELKKMVEGNSDATANCLRIMKITSRMIISLIKLNGGYVQAEVESLLESLSKASDNMLELEGLMMFSSSDHSTTKPFNSLVKEAQDCLEEKKKHAQILVTTPAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0016140 | OsNaBo_12g0016140.01 | Chr12 | 20639341 | 20645143 | - | NAM | ||
| CDS seq | atgcctcacaagcttgatgacgactccagctgggaagaagtattgaacatcaacagttatgctctgtttatggggtacttgtcgatggccgtcaagggaattagcgtcctggtggttctatggaccaccgtcgttcttcttggtggcttcgtctccatgctcgggaagaaggacttttggagtcttaccatcatcaccctcgtccagacaactggggtgttcgacgtttttctgaaagaaaagctgcagcacgttgggaaatccttctatggcctcggtggtactatatcaggcatgctgatgaaggattactctagcttgttgtccgggcgacggcttgtgctggcatacgttttgctggctctcaatctgctcttgttcgccgtcatactgtgccctctggcgctgttctacctcaccgggctgttcatcaccaccggcctgtccctgtggcgcctgatacagcgcgactacgcaatgtccgacggcgacggcagcagcagcgccaacctggagccggcgctcaacgtgctctactcgctggtgctcttccagggtgtgctcttctgctaccgcctcgcttcgcgcttcgccggcaaacggatcgcccgcctagtagccatggactacggcttcgacaaggacgatcacgcggggcaggcgctggtgatgaagtacatgcgcgagaccaagaccgggtgcgagaaggatccatcgttcgccaaaggaaggaacatggtgaagttcgccgtggcgctgatgaagccggagtcgtcgtcgtcgtccggcgactacatgtctggcgcgatgatcctggacaagatcctgggtcaggaggagctgcaggggcagcacgctctgatcaggaagctggtcggctccgcgtcctccagcaaggtgatgaagaggctgcttcgctcgctccggtcgtcaagccagtacaacagggacatccgggtgctcgccgcgaggatcgtggcgagcctcgccggcgagatcagcctcgccagcttcccgaacgcgctccggtgcatatcgtcgctgctcgacaccaccaccaccgagcagcaagacgacgacgacagcgcctcgtccgctcactgcaacgggctcatgaagtgcggccttgtcatcctcgacaagctcgccgccgaggagcacaaccgcaggctcatcatcgacaacgaccagggcatcctctccaaggccatggcgcccgtcaccgccgacctgctccactgcatcgaccacgccacatggtccgacgtctcagccgcgtcgatgcaattcatgtgccgccttgtcactgcccccggaaccaccggtgacacgcttcggtcccagatcttcgagaacaagggcgccatcaacaccatggagaaaatcctcacgtgtaaccaatgcaacgagaagctacacattctggccatcaagatcatcacaaagctgcccatggatgcatcctcgagcatcaacaccgagagcagggagaaattcactaagctgctggttcacatcttcactagaagcactagtactgatgaaaagaacaaggacgcctccaagagacaattggcaggtgaagcactggcaatgctgtccgaccaaagcgaaagcagcgcggccgccatcatcaaggcaaaggacactgttgtccgtgatctctgtaaaatgcttctagatgataacacggacagagaatacagaataagtgcatctgaaatcctggagcacctgtacattcgatacacaaagaaagatggatacctcaaggaactgacggaagccttgaatgatgtgctgccaatggtgctcaaagaaatacttctctttccaccaaagcaagaagaaaagaaaacagaaaaggcagaaaaggaaacagatggagccaagcttccggcacaaaatccagaccctgaaaaaggcccagatcctgttgtttcgcaagatgaaggcaacgttaatgagcaaaaagacgatatcaataacaaaaAtgtggacaggaaactgcatgcagctttactgtcacttagtgcagcattgtttgaaaaatcaatcactgatgatacagctttgactcaactggctgataaaattgtcccaggagactctgcatttagctttccaagggagctcaagaagatggtagaaggaaacagcgatgcaactgccaattgcctgagaataatgaagattaccagtaggatgatcatatcactgataaaactcaacggaggctatgtccaagcagaggtagagagcttgttggaatctctgtctaaggcttccgataacatgttggaactggaaggcttaatgatgttctctagtagcgaccatagcacaactaagcctttcaattcgctcgtgaaagaagcacaagactgccttgaagaaaagaagaaacatgcacaaattctggtaactacaccagctctatga
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| Protein seq | MPHKLDDDSSWEEVLNINSYALFMGYLSMAVKGISVLVVLWTTVVLLGGFVSMLGKKDFWSLTIITLVQTTGVFDVFLKEKLQHVGKSFYGLGGTISGMLMKDYSSLLSGRRLVLAYVLLALNLLLFAVILCPLALFYLTGLFITTGLSLWRLIQRDYAMSDGDGSSSANLEPALNVLYSLVLFQGVLFCYRLASRFAGKRIARLVAMDYGFDKDDHAGQALVMKYMRETKTGCEKDPSFAKGRNMVKFAVALMKPESSSSSGDYMSGAMILDKILGQEELQGQHALIRKLVGSASSSKVMKRLLRSLRSSSQYNRDIRVLAARIVASLAGEISLASFPNALRCISSLLDTTTTEQQDDDDSASSAHCNGLMKCGLVILDKLAAEEHNRRLIIDNDQGILSKAMAPVTADLLHCIDHATWSDVSAASMQFMCRLVTAPGTTGDTLRSQIFENKGAINTMEKILTCNQCNEKLHILAIKIITKLPMDASSSINTESREKFTKLLVHIFTRSTSTDEKNKDASKRQLAGEALAMLSDQSESSAAAIIKAKDTVVRDLCKMLLDDNTDREYRISASEILEHLYIRYTKKDGYLKELTEALNDVLPMVLKEILLFPPKQEEKKTEKAEKETDGAKLPAQNPDPEKGPDPVVSQDEGNVNEQKDDINNKNVDRKLHAALLSLSAALFEKSITDDTALTQLADKIVPGDSAFSFPRELKKMVEGNSDATANCLRIMKITSRMIISLIKLNGGYVQAEVESLLESLSKASDNMLELEGLMMFSSSDHSTTKPFNSLVKEAQDCLEEKKKHAQILVTTPAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.194614 | 0.0 | 0.321423 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0549800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36340 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0549800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008510 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008620 | SBH | 0.0 | 0.0 | 0.939047 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017050 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008450 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016110 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0295800 | RBH | 0.0781915 | 0.073144 | 0.053439 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016060 | RBH | 0.0 | 0.065683 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0328300 | RBH | 0.069535 | 0.0613915 | 0.441754 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016290 | RBH | 0.0 | 0.051140 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0016480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016460 | RBH | 0.0 | 0.0 | 0.153889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009680 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008390 | SBH | 0.0 | 0.0 | 2.304762 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016080 | RBH | 0.0 | 0.0 | 0.0 |
