Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0009680 | OGI:12029050 | 12/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:11060196-11060994 | ||||||||
| Gene Symbol | PTR, Ptr, OsPtr, Ptr(t), Pita2, - | ||||||||||
| DNA seq | aggatcgagcaagctgactggctgaggcaaacgtgtcgcggcgcaggccaGgttttggcaaaacgggtgacatctttagattctgtgactagagattaccttgtcatcttccctataatggtgtggtgtgtttttgcctgttccctggaacttgggatctagatgtccttgcttgtaatttctaggctttgggttaattccagctgatggtaagcttcggctaaggattaaaacggttgggaaaaatgcaaaaatagtttcctaccatttCctttttcctcgtaaacggaattagaacggtagagcctgttcgtacaagtaaATtttgtgtagttttgtgtacaagtaaggctgtgtttagttcagcgcaaagtttggattttagttgaaattaaagatgatgtgactgaaaaaTTgtgtgtgtatgacagcttgatgtgatggAaaatgactgaagtttggatccaaactttgaatctaaacacagcctaaatatttaccgtgtctgcaggtgaacagaatgtcgggtggacagagccgtgctcatcgccttgggcacatcgatgGAaactggccagaggtgaagctgatcaacgactacgcgatgttcatggggtacctgtcaatggctgtcaccgggacgggcttcctggtgctcacttggtccaccgtcgtcctcctcggtggattcgtttccacgctatcaacgaaggacttctggagtctcacggtcattacgctcgttcaaacaaggtcagctcgtcAtctcaatcaaattttggtgttccaggttaattaa
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| CDS seq | atgctgatcaacgactacgcgatgttcatggggtacctgtcaatggctgtcaccgggacgggcttcctggtgctcacttggtccaccgtcgtcctcctcggtggattcgtttccacgctatcaacgaaggacttctggagtctcacggtcattacgctcgttcaaacaaggtcagctcgtcAtctcaatcaaattttggtgttccaggttaattaa |
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| Protein seq | MLINDYAMFMGYLSMAVTGTGFLVLTWSTVVLLGGFVSTLSTKDFWSLTVITLVQTRSARHLNQILVFQVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0009680 | OsLaMu_12g0009680.01 | Chr12 | 11060196 | 11060994 | + | NAM | ||
| CDS seq | atgctgatcaacgactacgcgatgttcatggggtacctgtcaatggctgtcaccgggacgggcttcctggtgctcacttggtccaccgtcgtcctcctcggtggattcgtttccacgctatcaacgaaggacttctggagtctcacggtcattacgctcgttcaaacaaggtcagctcgtcAtctcaatcaaattttggtgttccaggttaattaa
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| Protein seq | MLINDYAMFMGYLSMAVTGTGFLVLTWSTVVLLGGFVSTLSTKDFWSLTVITLVQTRSARHLNQILVFQVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0285100 | SBH | 30.280594 | 30.580265 | 27.862715 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18660 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0285100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009680 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009810 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009480 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0149800 | RBH | 0.345338 | 0.6124855 | 0.3481355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009540 | SBH | 2.638343 | 2.708623 | 7.968520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0164800 | RBH | 0.3565785 | 0.369779 | 0.46656 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009450 | SBH | 3.605049 | 1.517734 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009670 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009660 | SBH | 59.902321 | 91.216034 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009630 | SBH | 11.936431 | 0.0 | 11.721591 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009700 | RBH | 0.520960 | 2.636267 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009360 | RBH | 0.0 | 0.0 | 0.0 |
