Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0009630 | OGI:12029160 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:10068317-10076059 | ||||||||
| Gene Symbol | PTR, Ptr, OsPtr, Ptr(t), Pita2 | ||||||||||
| DNA seq | acaataaaaaccaccacctaccgtgccaccttccaccactgctttccctcctcctcatcctcatcttcatctctagacctcatcttctccagccaccaccgcctcccttcccaccggtggtggcagcgggaagacagcggctcggttgagcccggcggggagggcaacgatttggtatgggaggagcagcggcgactccatccggcggtggatccgccgcctcctagtcccagctctctctCccccgctcctcctcctccccttcctccaccgccaccacccatccctctccctctctcagatctggtgcgcggggagcggtggaggctacggcggcggcggcggcgagaccggtagcagtgatggtggagaggacggatccgatggcggtggttctcgtcaaccagttcaaggacgacgacagcagcggctgctgcaacgatggataggctctgggcggctcctccaCTctcctcccctctctcatatccagtggctcggggtggtggggcgtggccgacgcatccggcggcggagctCgggtatcgatccggcatgtttttttttttctccaaaatcaatttttcttggtggtcgggaaacggattttcaattttctttttttcgctcgaatatctttttcgctggcggtcaacgtaacttaaccgcttgtgaaaacaagctttaaagtttcgctagtgaagattgttattttcacttgCcatttgtttgcgggcggctgacagtgccaccagcgaaaaactcttttgctagtagtgattgctagatggtcagcagagaacttgtggagcatatgactaTCaactaacagtacacttcagcagaaagaggatggttctagctctccggtggtttaatattgaaacgtacagcccacccaccaccaccccagtcgtccccagctaagcgctcccttgcttgcctcagtagacgagctgccaactagtagcactccagcaagcagcGggtcagcggagtccggagggcgcacgtgcgccgcagcgaggtatcagcatggCcaggcggcggctggctggccggCcgggttcggcaagcggctaagcaggtaattaagggactgcagatactgcttgtgatcatcccttAaaatttcgtctttcttgtcttgggccaggtttaattcctaattttttcttcaaactttcaacttttccatcacatcaaaacTtttctacacacacaaactttcaacttaattttccgttacatcgttccaatttcaatcaaacttctaattttagcgtgaactaaacacacccttggttgtgactctgggagtcgatacataggccttaatgctcgtagtttgtggattttggggttaaactggcgtggaactttacttggataccacctgggagttgatgtgattttagtgtttagtacagtttagagtttattacctaccggtTTCttggtgcctggcgcacactgagcatgcaaatgcagtgagagccagtatcatctaagacggctggacctgaaatattttaccatgtatatATCaaactcgacttgatcaggtgtttagcggaggaaggatcgatgtccggcgccggacagagccgtggtcatcgCcttggattacacattgattcggattggccagaggTCttgttgatcaatgactatgcggtgttcatGgggtacctgtcgatggttgtcaccgggacggggttcctggtgctcacgtggtccaccgtcatcctcctcggtggattcgTCtccatgctatccaacaaggacttctggagtctcacggtgatcacgctcgttcaaacaaggtgagctatctatagccatctccaccagacttatatttatttcgcgttcccaacattaaccagttcagccaagcaTttggagtttcgcattgctagctagctactagtttactgtcagatctagtgttgcgaaccgaatatgctgcaaaacgttgcaattccagagtggcTttatatactacattgatatgaaaatattcaagtcccatatttgcaaaatcaactatttttaaaatcgaattattttctccccttttcaagaagcatgtattttgtataTTtctcttcccatttgataataatttcatcaagaatttTAAaagagAaaatataaccaataaagcacaaatgtcatgatttcatgattgtgacatgtaaTaatcacttcttttttaatttttttttaattttctgaaatttttttgagagctttgaagtgtacctaaagcaattcatggtcatatgttgcaagacaaatgagataaattcatcaactagttaacaagcatgcattagagtatAaacatgaatcaaaggtattacaattAagctcaaatctctactattataaaaattgaagatgTttttgccggtggcttggtaagtcgtcatgtccgaaTtagcctcgcacataattactgccaatttaattatttaTGtgccccacatgtatgagctttaaacattagattttccataagaaaaTttgcttgttcggatcagtgcctttggccgattgcgtttcatcctgtgcattgtcacgaaccaaccaccaccgcgaggttgtcatcTtgctgatacggtctgttcggcaacacggtttgggacctgctgtcgtgcacctatatcaacaccaaccagcagtaGtcaggtgtgttgccgtgcgccgaggcaagcagcacgacgtaccattgttgattattctctacacgcacacaccgtattgagaagaattcctactgtgttcatcagaaaCtcaatccaatattgtctactgtgtatacgtgttccAaaaagattAaagaaaagatcaggatcgatatcaaagccgagatctattactacccacatatcgaaaatccacgcgtgcagcaagacgatcagcaacagcagccgatcgatgacggttgccaagagaaatacgaaaacctaatcagagaaatattcaatcaagctactgcgcacatatatctttacctcTtaaattatatttctatctctactattataaaaattgtagatgttttcgtcagtattttagtacgtcatccgcgtatgagtcggtttttaagtccgtttgattttggaaatacaaatccgtatttgagtcagTttttaagttcgttcgcttttagaaatacagaagaaatcgtataagaaatctctttaaaaactcacatactactaacttgagacgttcggacacctaattacagctcatgattttctaacacaATatatatccaagcgaatttgacacagtgaatttcatcttaactcgatataatataataagattaaaataatcttcacccgttgcaacacaagggcattttttctagtcaataataaagataatgatttcaaacgatttataatgcaacatattcacaagtacataggtTGgaaaaaaatccctatatatatatatacctattgcatcatcactctttctcaaaataagttcttcacaaaaataaccaagagaattttcaacaagtattagagctttttgtgctcattttgacattgataataaaatatctcaatttatttcgagtacgtccgtgtcgttaagaatgttctaaggatttggtacccattattttccttactgtaaatacggctttatcgtcaatactgtttccaaggattctgtattcaTtttttttctctcatcataagcaactttttattctcctgtgacatttggaataaacaATaagcaatttgaggaataacaatccaataagtatacaacatcctccCTctctatttAtaccgataacatggctgtccctagccacgaatccaactcatacaaaaagtccttcccgtacaagaaacaaactttacaaactttagtctttccaaacttggactccgatcgaaaTttgactcctctttccatatgcacacaacacgatgtgtatgccatatggaaaccttcacctccatgtacattgttctctagcttgagcatcccgcatgacatccttgaccgtctggacctcaacttcttccgagcctagtcctgattcatcaccgactatactcccatagcctcaagcaacacctgcacatgaataacaatgaaactccatatctgagtacaagttcacgctaacttgactcacatcagcatacaatagtatcacatacgaatagaaaccatctagaaataataaacatgaatcaatctagaaattccataaaaacaacccgaaaccgactccctcttggaatcactcagtcagaccatcgggccgCccggtctgaccggtgcctcctgcccggtctgacaagCAcccggtgccgaccgcagTgttcaccattcgaaaatactatccaccgtattttcaacaacacttaccgttgacaattgttcatcaccaagattaatcatcatatgattctacaacagacaggcacataggcatgttcagagagatgccatactagaattgaaatgtcaaattttggaagagAaaaaaaaatagagttaatAaaaaagaaaaagaaaaagaaagagctactctctgcattcattctttcatggcaaaattaattttacacgatcgccaaaagtaaatttgatcattaattaatgtgaaattagtttgacaggatggcatgtactgaatcttattttattattgtgttcatccctaacaaaaaaaccgtacttactctttccactgtcggtatctgtccTtttTAACCGGAAAATTCATCCATCCAAACAAAAAATATCTGAAACAGGATATTCGATGTTTTTCTGAATGGAAAAGTAAGCCACATTGGGTACTCATTGAAGCGCTTGTGCAAGGCCGCACGCTTCATCGCGTTGCCCCATAACCATAAGAAGGTTGGGTTCAGGGGTGCTGTTCGAGTGCTTGTCTTCACCATCGTCTTGTGTCCGCTGTTCCTGCTCTACATGTTTGGGCTCTTCGTTTCCCCCTGGATTTCGCTGTGGCGTCTAATCCAGCAGGATTATGGCGTGACGGCCGGAGACAGCAGCAGCAAGGCACACCTGCAGCCTGCGCTGGTGGTTCTCTACTCCCTGGCCCTGTTCCAGGGCGTCCTCTTCTACTACAGGGCCATCTCTGCTTGGGAAGAACAGAAGCTAGTGAAAGATGTGGCCGACAAATACATGTTTGATACAGTGTCGCGCAGTTCAGTTTCGGACTATTTACATGAGATCAAGGTGGggatgtgagaatgacccgtcctttgccagagggaggaacctgatcacatacgctgtcaagctgatggaatccacatcaccggaTgggtacctttcaggtgcacggattcttgatacactcatcaagtttaatagagatgatgcatcggggagcgaattaccggggcagagtatgcagatatacaatatgattggatctgcatcctccagtcccatactccacaacttagttcagatgctggatttcaaaagtgcatatgatggagagatcaggttgcgagccgcAaggattgttgagcactttgctggtgaggtccgtttagacaaaatcctgcaggggattcgatgtgtatcttccttgcttgaactcgagcagaaaggatttcagaaTgaccaccatagttctttCcaagaagacgacggcgaccaactttcttttgaagAagaggatgatcaccagatttctgtcAaagaaaaggattattaccccaaagattataaacagatgcaacttacaggcatgcagaTccttttaaagctctcctacgacaagaacaacttgttcctcatgagcaacacagatgatccggccttgatcaacaagattgtggcacttataacgtccaagggatcacttcacaaaaaacaacataacgaatggtCctgtatggcagagctcggggtgaagatactaagccgatttatgcgaTttatgTatggccctacaaaatcaaacaatattctgtggcatgaaatatcaacaagcagcaaagcaatcggcaccttggagagtattcttgagtgtgaccaatgtgactctgtgctgaagaaacacgccataaggattCtcaaaaggatattcAtggaTacatcttcggctatgggtgaaggagacagagaaaggttcattggctccttgatggacatgtctcttcacaacagtaatggtgactttcaaaatctggcaggtgtagatctggcgctcaagaaacaagggttaagcattctcaaagaaatatacttgaatccatcttcgaTtatgggcgaaggagacagagaaaggttcatcggctccctgatggacatgtttcttgacaacagtaagggcgactttggaaatctgccaggtgaagatctggacctcaagaaacAagagttaagtattctcaaagaaatatgcatGgatccatcttcgtttatgggcgaaggtgacagagaaaaattcatcggcaccctgatggacatgTttcttcacaacagcaagggcgacttgtttgaaaaactagcaggtgatgatCtggtgcagatatgtagaagaagtggaagcagtgccacgatcatattgaggaaatatggtcatgatattgttgattgtaTtgctgataCtcgttcaagcgtatatagcagcatgcacAGaaaaattgcagcaaagatcctcaatcatctgtgtagtCcctactccactgacgaggaacatcTtcagaatctgaaggaggccAtcattgatttgatacccaaggtacgttagtcgctgtcaTttatacttcttatgtcaacaaacaTTtttttttcatgataatgaaatataaCTctggcagcctctacattgtcagatgcacgaaaccatagctcattAaatagtttggcaacctctacattcgcagcaatccaTgggtaacaaacttgtttaaagcaaaactgaagcacaacttgtatcAttaaaatttcatccatgcttactgaatatccatcagagtagtctCcaaaagatgggatactgcttttatatgcatCctatttatatcggaatgaccgaaagcactgtaatgttgcaggtgctaagagaagcacttggttgggggttgacaggagaagagatactgcgagtggcagtttcaggccttgaaggtacccAagatgatgactggaaattgcAggaagcattggcgtccCTctgtgcaaccGTgtttaacagaattgtcagcAaggatgcagatttgactgctcggttcaacaacatcgccgctggtatctgcgaccAgacaacgaagcctcgcatgaccttcgcagacctcatcaacgaagctgtaaaagttcatcgcatcgaatttAaaaaaccagaaaaaccaaaaccacctgccaagccggaactgtacgagTttatGcctgcgaaataCcccccgccccactatatgtttttggtcgaggaagatcccaacgcgtgTtgtatctcttgaTaactccctaatttgtacttcctccgtttcaCaatgtaagtcattctattatttcctacatttatattgataTtaatgaatctagatatatAtaTttgtctagattcattaacatcaatatgaatgtGggaaatactagaatgacttacattttgaaacggagggagtaatgcaaaccgaggatgAaaaaatatatatgcctatacggtactgctccaTttccaaataaattcccgttctgctttatgct
More
|
||||||||||
| CDS seq | acaataaaaaccaccacctaccgtgccaccttccaccactgctttccctcctcctcatcctcatcttcatctctagacctcatcttctccagccaccaccgcctcccttcccaccggtggtggcagcgggaagacagcggctcgcccacccaccaccaccccagtcgtccccagctaagcgctcccttgcttgcctcagtagacgagctgccaactagtagcactccagcaagcagcGggtcagcggagtccggagggcgcacgtgcgccgcagcgaggtatcagcatggCcaggcggcggctggctggccggCcgggtgtttagcggaggaaggatcgatgtccggcgccggacagagccgtggtcatcgCcttggattacacattgattcggattggccagaggTCttgttgatcaatgactatgcggtgttcatGgggtacctgtcgatggttgtcaccgggacggggttcctggtgctcacgtggtccaccgtcatcctcctcggtggattcgTCtccatgctatccaacaaggacttctggagtctcacggtgatcacgctcgttcaaacaagGATATTCGATGTTTTTCTGAATGGAAAAGTAAGCCACATTGGGTACTCATTGAAGCGCTTGTGCAAGGCCGCACGCTTCATCGCGTTGCCCCATAACCATAAGAAGGTTGGGTTCAGGGGTGCTGTTCGAGTGCTTGTCTTCACCATCGTCTTGTGTCCGCTGTTCCTGCTCTACATGTTTGGGCTCTTCGTTTCCCCCTGGATTTCGCTGTGGCGTCTAATCCAGCAGGATTATGGCGTGACGGCCGGAGACAGCAGCAGCAAGGCACACCTGCAGCCTGCGCTGGTGGTTCTCTACTCCCTGGCCCTGTTCCAGGGCGTCCTCTTCTACTACAGGGCCATCTCTGCTTGGGAAGAACAGAAGCTATGTCGCGCAGTTCAGTTTCGGACTATTTACATGAGATCAAGGTGGggatgtgagaatgacccgtcctttgccagagggaggaacctgatcacatacgctgtcaagctgatggaatccacatcaccggaTgggtacctttcaggtgcacggattcttgatacactcatcaagtttaatagagatgatgcatcggggagcgaattaccggggcagagtatgcagatatacaatatgattggatctgcatcctccagtcccatactccacaacttagttcagatgctggatttcaaaagtgcatatgatggagagatcaggttgcgagccgcAaggattgttgagcactttgctggtgaggtccgtttagacaaaatcctgcaggggattcgatgtgtatcttccttgcttgaactcgagcagaaaggatttcagaaTgaccaccatagttctttCcaagaagacgacggcgaccaactttcttttgaagAagaggatgatcaccagatttctgtcAaagaaaaggattattaccccaaagattataaacagatgcaacttacaggcatgcagaTccttttaaagctctcctacgacaagaacaacttgttcctcatgagcaacacagatgatccggccttgatcaacaagattgtggcacttataacgtccaagggatcacttcacaaaaaacaacataacgaatggtCctgtatggcagagctcggggtgaagatactaagccgatttatgcgaTttatgTatggccctacaaaatcaaacaatattctgtggcatgaaatatcaacaagcagcaaagcaatcggcaccttggagagtattcttgagtgtgaccaatgtgactctgtgctgaagaaacacgccataaggattCtcaaaaggatattcAtggaTacatcttcggctatgggtgaaggagacagagaaaggttcattggctccttgatggacatgtctcttcacaacagtaatggtgactttcaaaatctggcaggtgtagatctggcgctcaagaaacaagggttaagcattctcaaagaaatatacttgaatccatcttcgaTtatgggcgaaggagacagagaaaggttcatcggctccctgatggacatgtttcttgacaacagtaagggcgactttggaaatctgccaggtgaagatctggacctcaagaaacAagagttaagtattctcaaagaaatatgcatGgatccatcttcgtttatgggcgaaggtgacagagaaaaattcatcggcaccctgatggacatgTttcttcacaacagcaagggcgacttgtttgaaaaactagcaggtgatgatCtggtgcagatatgtagaagaagtggaagcagtgccacgatcatattgaggaaatatggtcatgatattgttgattgtaTtgctgataCtcgttcaagcgtatatagcagcatgcacAGaaaaattgcagcaaagatcctcaatcatctgtgtagtCcctactccactgacgaggaacatcTtcagaatctgaaggaggccAtcattgatttgatacccaaggtgctaagagaagcacttggttgggggttgacaggagaagagatactgcgagtggcagtttcaggccttgaaggtacccAagatgatgactggaaattgcAggaagcattggcgtccCTctgtgcaaccGTgtttaacagaattgtcagcAaggatgcagatttgactgctcggttcaacaacatcgccgctggtatctgcgaccAgacaacgaagcctcgcatgaccttcgcagacctcatcaacgaagctgtaaaagttcatcgcatcgaatttAaaaaaccagaaaaaccaaaaccacctgccaagccggaactgtacgagTttatGcctgcgaaataCcccccgccccactatatgtttttggtcgaggaagatcccaacgcgtgTtgtatctcttga
More
|
||||||||||
| Protein seq | TIKTTTYRATFHHCFPSSSSSSSSLDLIFSSHHRLPSHRWWQREDSGSPTHHHPSRPQLSAPLLASVDELPTSSTPASSGSAESGGRTCAAARYQHGQAAAGWPAGCLAEEGSMSGAGQSRGHRLGLHIDSDWPEVLLINDYAVFMGYLSMVVTGTGFLVLTWSTVILLGGFVSMLSNKDFWSLTVITLVQTRIFDVFLNGKVSHIGYSLKRLCKAARFIALPHNHKKVGFRGAVRVLVFTIVLCPLFLLYMFGLFVSPWISLWRLIQQDYGVTAGDSSSKAHLQPALVVLYSLALFQGVLFYYRAISAWEEQKLCRAVQFRTIYMRSRWGCENDPSFARGRNLITYAVKLMESTSPDGYLSGARILDTLIKFNRDDASGSELPGQSMQIYNMIGSASSSPILHNLVQMLDFKSAYDGEIRLRAARIVEHFAGEVRLDKILQGIRCVSSLLELEQKGFQNDHHSSFQEDDGDQLSFEEEDDHQISVKEKDYYPKDYKQMQLTGMQILLKLSYDKNNLFLMSNTDDPALINKIVALITSKGSLHKKQHNEWSCMAELGVKILSRFMRFMYGPTKSNNILWHEISTSSKAIGTLESILECDQCDSVLKKHAIRILKRIFMDTSSAMGEGDRERFIGSLMDMSLHNSNGDFQNLAGVDLALKKQGLSILKEIYLNPSSIMGEGDRERFIGSLMDMFLDNSKGDFGNLPGEDLDLKKQELSILKEICMDPSSFMGEGDREKFIGTLMDMFLHNSKGDLFEKLAGDDLVQICRRSGSSATIILRKYGHDIVDCIADTRSSVYSSMHRKIAAKILNHLCSPYSTDEEHLQNLKEAIIDLIPKVLREALGWGLTGEEILRVAVSGLEGTQDDDWKLQEALASLCATVFNRIVSKDADLTARFNNIAAGICDQTTKPRMTFADLINEAVKVHRIEFKKPEKPKPPAKPELYEFMPAKYPPPHYMFLVEEDPNACCIS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0009630 | OsLiXu_12g0009630.01 | Chr12 | 10068317 | 10075819 | + | NAM | ||
| CDS seq | acaataaaaaccaccacctaccgtgccaccttccaccactgctttccctcctcctcatcctcatcttcatctctagacctcatcttctccagccaccaccgcctcccttcccaccggtggtggcagcgggaagacagcggctcgcccacccaccaccaccccagtcgtccccagctaagcgctcccttgcttgcctcagtagacgagctgccaactagtagcactccagcaagcagcGggtcagcggagtccggagggcgcacgtgcgccgcagcgaggtatcagcatggCcaggcggcggctggctggccggCcgggtgtttagcggaggaaggatcgatgtccggcgccggacagagccgtggtcatcgCcttggattacacattgattcggattggccagaggTCttgttgatcaatgactatgcggtgttcatGgggtacctgtcgatggttgtcaccgggacggggttcctggtgctcacgtggtccaccgtcatcctcctcggtggattcgTCtccatgctatccaacaaggacttctggagtctcacggtgatcacgctcgttcaaacaagGATATTCGATGTTTTTCTGAATGGAAAAGTAAGCCACATTGGGTACTCATTGAAGCGCTTGTGCAAGGCCGCACGCTTCATCGCGTTGCCCCATAACCATAAGAAGGTTGGGTTCAGGGGTGCTGTTCGAGTGCTTGTCTTCACCATCGTCTTGTGTCCGCTGTTCCTGCTCTACATGTTTGGGCTCTTCGTTTCCCCCTGGATTTCGCTGTGGCGTCTAATCCAGCAGGATTATGGCGTGACGGCCGGAGACAGCAGCAGCAAGGCACACCTGCAGCCTGCGCTGGTGGTTCTCTACTCCCTGGCCCTGTTCCAGGGCGTCCTCTTCTACTACAGGGCCATCTCTGCTTGGGAAGAACAGAAGCTATGTCGCGCAGTTCAGTTTCGGACTATTTACATGAGATCAAGGTGGggatgtgagaatgacccgtcctttgccagagggaggaacctgatcacatacgctgtcaagctgatggaatccacatcaccggaTgggtacctttcaggtgcacggattcttgatacactcatcaagtttaatagagatgatgcatcggggagcgaattaccggggcagagtatgcagatatacaatatgattggatctgcatcctccagtcccatactccacaacttagttcagatgctggatttcaaaagtgcatatgatggagagatcaggttgcgagccgcAaggattgttgagcactttgctggtgaggtccgtttagacaaaatcctgcaggggattcgatgtgtatcttccttgcttgaactcgagcagaaaggatttcagaaTgaccaccatagttctttCcaagaagacgacggcgaccaactttcttttgaagAagaggatgatcaccagatttctgtcAaagaaaaggattattaccccaaagattataaacagatgcaacttacaggcatgcagaTccttttaaagctctcctacgacaagaacaacttgttcctcatgagcaacacagatgatccggccttgatcaacaagattgtggcacttataacgtccaagggatcacttcacaaaaaacaacataacgaatggtCctgtatggcagagctcggggtgaagatactaagccgatttatgcgaTttatgTatggccctacaaaatcaaacaatattctgtggcatgaaatatcaacaagcagcaaagcaatcggcaccttggagagtattcttgagtgtgaccaatgtgactctgtgctgaagaaacacgccataaggattCtcaaaaggatattcAtggaTacatcttcggctatgggtgaaggagacagagaaaggttcattggctccttgatggacatgtctcttcacaacagtaatggtgactttcaaaatctggcaggtgtagatctggcgctcaagaaacaagggttaagcattctcaaagaaatatacttgaatccatcttcgaTtatgggcgaaggagacagagaaaggttcatcggctccctgatggacatgtttcttgacaacagtaagggcgactttggaaatctgccaggtgaagatctggacctcaagaaacAagagttaagtattctcaaagaaatatgcatGgatccatcttcgtttatgggcgaaggtgacagagaaaaattcatcggcaccctgatggacatgTttcttcacaacagcaagggcgacttgtttgaaaaactagcaggtgatgatCtggtgcagatatgtagaagaagtggaagcagtgccacgatcatattgaggaaatatggtcatgatattgttgattgtaTtgctgataCtcgttcaagcgtatatagcagcatgcacAGaaaaattgcagcaaagatcctcaatcatctgtgtagtCcctactccactgacgaggaacatcTtcagaatctgaaggaggccAtcattgatttgatacccaaggtgctaagagaagcacttggttgggggttgacaggagaagagatactgcgagtggcagtttcaggccttgaaggtacccAagatgatgactggaaattgcAggaagcattggcgtccCTctgtgcaaccGTgtttaacagaattgtcagcAaggatgcagatttgactgctcggttcaacaacatcgccgctggtatctgcgaccAgacaacgaagcctcgcatgaccttcgcagacctcatcaacgaagctgtaaaagttcatcgcatcgaatttAaaaaaccagaaaaaccaaaaccacctgccaagccggaactgtacgagTttatGcctgcgaaataCcccccgccccactatatgtttttggtcgaggaagatcccaacgcgtgTtgtatctcttga
More
|
|||||||
| Protein seq | TIKTTTYRATFHHCFPSSSSSSSSLDLIFSSHHRLPSHRWWQREDSGSPTHHHPSRPQLSAPLLASVDELPTSSTPASSGSAESGGRTCAAARYQHGQAAAGWPAGCLAEEGSMSGAGQSRGHRLGLHIDSDWPEVLLINDYAVFMGYLSMVVTGTGFLVLTWSTVILLGGFVSMLSNKDFWSLTVITLVQTRIFDVFLNGKVSHIGYSLKRLCKAARFIALPHNHKKVGFRGAVRVLVFTIVLCPLFLLYMFGLFVSPWISLWRLIQQDYGVTAGDSSSKAHLQPALVVLYSLALFQGVLFYYRAISAWEEQKLCRAVQFRTIYMRSRWGCENDPSFARGRNLITYAVKLMESTSPDGYLSGARILDTLIKFNRDDASGSELPGQSMQIYNMIGSASSSPILHNLVQMLDFKSAYDGEIRLRAARIVEHFAGEVRLDKILQGIRCVSSLLELEQKGFQNDHHSSFQEDDGDQLSFEEEDDHQISVKEKDYYPKDYKQMQLTGMQILLKLSYDKNNLFLMSNTDDPALINKIVALITSKGSLHKKQHNEWSCMAELGVKILSRFMRFMYGPTKSNNILWHEISTSSKAIGTLESILECDQCDSVLKKHAIRILKRIFMDTSSAMGEGDRERFIGSLMDMSLHNSNGDFQNLAGVDLALKKQGLSILKEIYLNPSSIMGEGDRERFIGSLMDMFLDNSKGDFGNLPGEDLDLKKQELSILKEICMDPSSFMGEGDREKFIGTLMDMFLHNSKGDLFEKLAGDDLVQICRRSGSSATIILRKYGHDIVDCIADTRSSVYSSMHRKIAAKILNHLCSPYSTDEEHLQNLKEAIIDLIPKVLREALGWGLTGEEILRVAVSGLEGTQDDDWKLQEALASLCATVFNRIVSKDADLTARFNNIAAGICDQTTKPRMTFADLINEAVKVHRIEFKKPEKPKPPAKPELYEFMPAKYPPPHYMFLVEEDPNACCIS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0009630 | OsLiXu_12g0009630.02 | Chr12 | 10069929 | 10076059 | + | IsoSeq | ||
| CDS seq | aTgaccaccatagttctttCcaagaagacgacggcgaccaactttcttttgaagAagaggatgatcaccagatttctgtcAaagaaaaggattattaccccaaagattataaacagatgcaacttacaggcatgcagaTcc |
|||||||
| Protein seq | MTTIVLSKKTTATNFLLKKRMITRFLSKKRIITPKIINRCNLQACRS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 10073125 | 10075091 | + | OsLiXu_12g0009630.02 | OsLiXu_12g0009630.02,OsLiXu_12g0009630.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.936431 | 0.0 | 11.721591 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0285100 | RBH | 30.280594 | 30.580265 | 27.862715 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g18729 | RBH | 11.975907 | 12.509577 | 4.904204 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0285100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0009720 | RBH | 5.553842 | 26.160643 | 36.970058 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009910 | RBH | 3.754186 | 12.766769 | 13.817848 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0009850 | RBH | 11.324760 | 28.088892 | 50.090675 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0009600 | RBH | 0.278721 | 0.081459 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009500 | RBH | 79.345589 | 68.573959 | 55.447197 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0150500 | RBH | 23.7882735 | 61.6021995 | 39.5771845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0009540 | RBH | 2.638343 | 2.708623 | 7.968520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0165500 | RBH | 37.9566445 | 62.6285035 | 33.732785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009450 | RBH | 3.605049 | 1.517734 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0009710 | RBH | 6.211214 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0009660 | RBH | 59.902321 | 91.216034 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0009590 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0009700 | RBH | 0.520960 | 2.636267 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G009480 | RBH | 0.448261 | 0.816059 | 2.524651 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009400 | RBH | 13.157883 | 50.981449 | 29.620802 |
