Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_12g0015220 OGI:12054530 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr12:19475376-19478058
Gene Symbol -
DNA seq

atggacaaccatggcggcgacggtggcgccggcggcggtggaggaggagagggagagaggtcggtgcgggtgaatattgaagctcaggcgagtgatccggcggggatggtggtggcgatggcgacgccgttcgagccgcagctgtcggacgattcgccgccgaggtcgagcatgcagagcgtcgcggaggtcgtcgacgacgcggcggcggtggaggcgaccggaggaggaggggacgaggtggtggcggtggcggcggtggggccggagcggaggctgacgatgctggcgctgcggctggcgatcctggagaaggcggcgagcgggctgggcgcgctcggcttcatctgggccaccgtcgtgctcctcggcggcttcgccatcacgctcgggagggtggacttctggtcggtcaccgtcatcctcctcgtcgagggcgcccgcatcttcagccgcagccacgagctggagtggcagcaccaggccacgtggtcgctcgccgccgccggccgctccagcttccgcctcgtcgcccgctccttccgcttcgtgttccacctcgacgacggcaaggccgccgccgacgccggcggcggcggcggtggcgcgccgaggatggggcgacggcgatggcggatcagctggagcttcctgtcgcggcacgtcgggagggtgttctactggctgcagctggcgtcggcgacggcgtgcgtcgcggtgtcggcggtgaggctcgctgggcaagacttcggcgaggcggaggacgcgcggaccaaccggaggtcggcgctggacatcttctacgggctcgcgctggcggaggcgctgctgttcttgatggagaaggcgatgtgggagtgggaggtgagctacggccgcctcctccagcgcgtcgccggcgagtgccacctcgccggcgagcccgggctggtcgccgtccgccgcttcttctacgacgcctactcccggtgcgtcgacgggagcatcttcgacggcctccggatggacctcgtctccttcgccgaggagctcctcgtcgggggctcccacgacgagcagcgcatcggcgtcgggatcctcgtcaacgtcgcggcgaacccgcggctcggggaggccgcgctgcggcgcgtcggcacgtcggcggcggtggtggaccggctggtggagatgctcacctggagcggcggcgccgccgaggccgccgccagggcgtccgccgcgctcgtcgtgtccaagctcgccagcaagaagcggaacgcgctccgcgtcgccggcgtccccggcgccatcgagtcggtgtcgtcgctgctctacgccgccggcgacgaggagtgcaacctcctcggcctcctcatcatcaagaagctggcgcgcgaccacgacaactgcagcaagatcggcaacgcgcgcggcctcctcgacaagatcatcgacttctccgccatcggcggcggcgccgtgatcacgccgtcgcgcgccaaggccgtgaagcggtcgctgcaggtggtgaagatgctcgcggagacgacggggagcaccgggaagctgctccggcgggaggtcgccgagatcgtgttcacggtgagcaacatccgcgccgtgctccagcacggcgccggccacctcgagctgcagcggctcggcgccgaggtgctcacccgcctcgccatggacgcggacgcgcgcgagaagatcggcggcaccggcggcgtcgtctccctcctcctcgccatgttcctccagccctccatcaccgacgagggcgacgccgcgcgcgtcgaggccggcgaggcgctcgccatgctcgccctcgacagccgccgcaactgcgaccgcatactccgcgccggcggcggcggcggcgccgccaccgtcgcccgcctcgtcgacgcgcttaccgacgacgcggccggcatcggcgcggcccggatcctgaccaacctctgcgcgtacgccggcggcgagtggttctccgacctccacctcgtcacctccggcgccgccacggcgctgcgcaacgtgatgaccaccaagaagtccaagctgctcgaggtctccctggggctcgtcgcccagatggcgcggttcatgggcccgcacgagctgtcccaccacctcgccggcgccggcgtcgccggcggcgaggaggagctggtcggacggctggtcgccgtgctggcgaggtacggctccccgtcgatccgggtgccgcggatccggcggttcgccgtggagctcgccgtcgcgatgatgacggaggggaggcggcggcgcggcgcggtggcggtgatgatggcggcggccgggatggggccggtgctgcggcgcgtggcggagaccacgtcggagctcgagtgcttccacgtcttctccggcagcgccgggctgagccgccacgccgtctccctctccgccctcgtcgacaccgcgctcgagctcatgggggcacgtggcaccgacgaccaatagaaaaccgccacgtcagcatctcgcatgtcttcttttccaacaaaagaaaaagaaaatcacacgtgttaatttgattaaattaattaattaattattatacgattcttttgagcattgtaatacaaggatcacacaatgattggggttatcaatgagaaagatcgaatttcagtgatttaattaaattttttaatgcattttgtacatggatgct

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CDS seq

atggacaaccatggcggcgacggtggcgccggcggcggtggaggaggagagggagagaggtcggtgcgggtgaatattgaagctcaggcgagtgatccggcggggatggtggtggcgatggcgacgccgttcgagccgcagctgtcggacgattcgccgccgaggtcgagcatgcagagcgtcgcggaggtcgtcgacgacgcggcggcggtggaggcgaccggaggaggaggggacgaggtggtggcggtggcggcggtggggccggagcggaggctgacgatgctggcgctgcggctggcgatcctggagaaggcggcgagcgggctgggcgcgctcggcttcatctgggccaccgtcgtgctcctcggcggcttcgccatcacgctcgggagggtggacttctggtcggtcaccgtcatcctcctcgtcgagggcgcccgcatcttcagccgcagccacgagctggagtggcagcaccaggccacgtggtcgctcgccgccgccggccgctccagcttccgcctcgtcgcccgctccttccgcttcgtgttccacctcgacgacggcaaggccgccgccgacgccggcggcggcggcggtggcgcgccgaggatggggcgacggcgatggcggatcagctggagcttcctgtcgcggcacgtcgggagggtgttctactggctgcagctggcgtcggcgacggcgtgcgtcgcggtgtcggcggtgaggctcgctgggcaagacttcggcgaggcggaggacgcgcggaccaaccggaggtcggcgctggacatcttctacgggctcgcgctggcggaggcgctgctgttcttgatggagaaggcgatgtgggagtgggaggtgagctacggccgcctcctccagcgcgtcgccggcgagtgccacctcgccggcgagcccgggctggtcgccgtccgccgcttcttctacgacgcctactcccggtgcgtcgacgggagcatcttcgacggcctccggatggacctcgtctccttcgccgaggagctcctcgtcgggggctcccacgacgagcagcgcatcggcgtcgggatcctcgtcaacgtcgcggcgaacccgcggctcggggaggccgcgctgcggcgcgtcggcacgtcggcggcggtggtggaccggctggtggagatgctcacctggagcggcggcgccgccgaggccgccgccagggcgtccgccgcgctcgtcgtgtccaagctcgccagcaagaagcggaacgcgctccgcgtcgccggcgtccccggcgccatcgagtcggtgtcgtcgctgctctacgccgccggcgacgaggagtgcaacctcctcggcctcctcatcatcaagaagctggcgcgcgaccacgacaactgcagcaagatcggcaacgcgcgcggcctcctcgacaagatcatcgacttctccgccatcggcggcggcgccgtgatcacgccgtcgcgcgccaaggccgtgaagcggtcgctgcaggtggtgaagatgctcgcggagacgacggggagcaccgggaagctgctccggcgggaggtcgccgagatcgtgttcacggtgagcaacatccgcgccgtgctccagcacggcgccggccacctcgagctgcagcggctcggcgccgaggtgctcacccgcctcgccatggacgcggacgcgcgcgagaagatcggcggcaccggcggcgtcgtctccctcctcctcgccatgttcctccagccctccatcaccgacgagggcgacgccgcgcgcgtcgaggccggcgaggcgctcgccatgctcgccctcgacagccgccgcaactgcgaccgcatactccgcgccggcggcggcggcggcgccgccaccgtcgcccgcctcgtcgacgcgcttaccgacgacgcggccggcatcggcgcggcccggatcctgaccaacctctgcgcgtacgccggcggcgagtggttctccgacctccacctcgtcacctccggcgccgccacggcgctgcgcaacgtgatgaccaccaagaagtccaagctgctcgaggtctccctggggctcgtcgcccagatggcgcggttcatgggcccgcacgagctgtcccaccacctcgccggcgccggcgtcgccggcggcgaggaggagctggtcggacggctggtcgccgtgctggcgaggtacggctccccgtcgatccgggtgccgcggatccggcggttcgccgtggagctcgccgtcgcgatgatgacggaggggaggcggcggcgcggcgcggtggcggtgatgatggcggcggccgggatggggccggtgctgcggcgcgtggcggagaccacgtcggagctcgagtgcttccacgtcttctccggcagcgccgggctgagccgccacgccgtctccctctccgccctcgtcgacaccgcgctcgagctcatgggggcacgtggcaccgacgaccaatag

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Protein seq

MDNHGGDGGAGGGGGGEGERSVRVNIEAQASDPAGMVVAMATPFEPQLSDDSPPRSSMQSVAEVVDDAAAVEATGGGGDEVVAVAAVGPERRLTMLALRLAILEKAASGLGALGFIWATVVLLGGFAITLGRVDFWSVTVILLVEGARIFSRSHELEWQHQATWSLAAAGRSSFRLVARSFRFVFHLDDGKAAADAGGGGGGAPRMGRRRWRISWSFLSRHVGRVFYWLQLASATACVAVSAVRLAGQDFGEAEDARTNRRSALDIFYGLALAEALLFLMEKAMWEWEVSYGRLLQRVAGECHLAGEPGLVAVRRFFYDAYSRCVDGSIFDGLRMDLVSFAEELLVGGSHDEQRIGVGILVNVAANPRLGEAALRRVGTSAAVVDRLVEMLTWSGGAAEAAARASAALVVSKLASKKRNALRVAGVPGAIESVSSLLYAAGDEECNLLGLLIIKKLARDHDNCSKIGNARGLLDKIIDFSAIGGGAVITPSRAKAVKRSLQVVKMLAETTGSTGKLLRREVAEIVFTVSNIRAVLQHGAGHLELQRLGAEVLTRLAMDADAREKIGGTGGVVSLLLAMFLQPSITDEGDAARVEAGEALAMLALDSRRNCDRILRAGGGGGAATVARLVDALTDDAAGIGAARILTNLCAYAGGEWFSDLHLVTSGAATALRNVMTTKKSKLLEVSLGLVAQMARFMGPHELSHHLAGAGVAGGEEELVGRLVAVLARYGSPSIRVPRIRRFAVELAVAMMTEGRRRRGAVAVMMAAAGMGPVLRRVAETTSELECFHVFSGSAGLSRHAVSLSALVDTALELMGARGTDDQ

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0015220 OsNaBo_12g0015220.01 Chr12 19475376 19478058 + NAM
CDS seq

atggacaaccatggcggcgacggtggcgccggcggcggtggaggaggagagggagagaggtcggtgcgggtgaatattgaagctcaggcgagtgatccggcggggatggtggtggcgatggcgacgccgttcgagccgcagctgtcggacgattcgccgccgaggtcgagcatgcagagcgtcgcggaggtcgtcgacgacgcggcggcggtggaggcgaccggaggaggaggggacgaggtggtggcggtggcggcggtggggccggagcggaggctgacgatgctggcgctgcggctggcgatcctggagaaggcggcgagcgggctgggcgcgctcggcttcatctgggccaccgtcgtgctcctcggcggcttcgccatcacgctcgggagggtggacttctggtcggtcaccgtcatcctcctcgtcgagggcgcccgcatcttcagccgcagccacgagctggagtggcagcaccaggccacgtggtcgctcgccgccgccggccgctccagcttccgcctcgtcgcccgctccttccgcttcgtgttccacctcgacgacggcaaggccgccgccgacgccggcggcggcggcggtggcgcgccgaggatggggcgacggcgatggcggatcagctggagcttcctgtcgcggcacgtcgggagggtgttctactggctgcagctggcgtcggcgacggcgtgcgtcgcggtgtcggcggtgaggctcgctgggcaagacttcggcgaggcggaggacgcgcggaccaaccggaggtcggcgctggacatcttctacgggctcgcgctggcggaggcgctgctgttcttgatggagaaggcgatgtgggagtgggaggtgagctacggccgcctcctccagcgcgtcgccggcgagtgccacctcgccggcgagcccgggctggtcgccgtccgccgcttcttctacgacgcctactcccggtgcgtcgacgggagcatcttcgacggcctccggatggacctcgtctccttcgccgaggagctcctcgtcgggggctcccacgacgagcagcgcatcggcgtcgggatcctcgtcaacgtcgcggcgaacccgcggctcggggaggccgcgctgcggcgcgtcggcacgtcggcggcggtggtggaccggctggtggagatgctcacctggagcggcggcgccgccgaggccgccgccagggcgtccgccgcgctcgtcgtgtccaagctcgccagcaagaagcggaacgcgctccgcgtcgccggcgtccccggcgccatcgagtcggtgtcgtcgctgctctacgccgccggcgacgaggagtgcaacctcctcggcctcctcatcatcaagaagctggcgcgcgaccacgacaactgcagcaagatcggcaacgcgcgcggcctcctcgacaagatcatcgacttctccgccatcggcggcggcgccgtgatcacgccgtcgcgcgccaaggccgtgaagcggtcgctgcaggtggtgaagatgctcgcggagacgacggggagcaccgggaagctgctccggcgggaggtcgccgagatcgtgttcacggtgagcaacatccgcgccgtgctccagcacggcgccggccacctcgagctgcagcggctcggcgccgaggtgctcacccgcctcgccatggacgcggacgcgcgcgagaagatcggcggcaccggcggcgtcgtctccctcctcctcgccatgttcctccagccctccatcaccgacgagggcgacgccgcgcgcgtcgaggccggcgaggcgctcgccatgctcgccctcgacagccgccgcaactgcgaccgcatactccgcgccggcggcggcggcggcgccgccaccgtcgcccgcctcgtcgacgcgcttaccgacgacgcggccggcatcggcgcggcccggatcctgaccaacctctgcgcgtacgccggcggcgagtggttctccgacctccacctcgtcacctccggcgccgccacggcgctgcgcaacgtgatgaccaccaagaagtccaagctgctcgaggtctccctggggctcgtcgcccagatggcgcggttcatgggcccgcacgagctgtcccaccacctcgccggcgccggcgtcgccggcggcgaggaggagctggtcggacggctggtcgccgtgctggcgaggtacggctccccgtcgatccgggtgccgcggatccggcggttcgccgtggagctcgccgtcgcgatgatgacggaggggaggcggcggcgcggcgcggtggcggtgatgatggcggcggccgggatggggccggtgctgcggcgcgtggcggagaccacgtcggagctcgagtgcttccacgtcttctccggcagcgccgggctgagccgccacgccgtctccctctccgccctcgtcgacaccgcgctcgagctcatgggggcacgtggcaccgacgaccaatag

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Protein seq

MDNHGGDGGAGGGGGGEGERSVRVNIEAQASDPAGMVVAMATPFEPQLSDDSPPRSSMQSVAEVVDDAAAVEATGGGGDEVVAVAAVGPERRLTMLALRLAILEKAASGLGALGFIWATVVLLGGFAITLGRVDFWSVTVILLVEGARIFSRSHELEWQHQATWSLAAAGRSSFRLVARSFRFVFHLDDGKAAADAGGGGGGAPRMGRRRWRISWSFLSRHVGRVFYWLQLASATACVAVSAVRLAGQDFGEAEDARTNRRSALDIFYGLALAEALLFLMEKAMWEWEVSYGRLLQRVAGECHLAGEPGLVAVRRFFYDAYSRCVDGSIFDGLRMDLVSFAEELLVGGSHDEQRIGVGILVNVAANPRLGEAALRRVGTSAAVVDRLVEMLTWSGGAAEAAARASAALVVSKLASKKRNALRVAGVPGAIESVSSLLYAAGDEECNLLGLLIIKKLARDHDNCSKIGNARGLLDKIIDFSAIGGGAVITPSRAKAVKRSLQVVKMLAETTGSTGKLLRREVAEIVFTVSNIRAVLQHGAGHLELQRLGAEVLTRLAMDADAREKIGGTGGVVSLLLAMFLQPSITDEGDAARVEAGEALAMLALDSRRNCDRILRAGGGGGAATVARLVDALTDDAAGIGAARILTNLCAYAGGEWFSDLHLVTSGAATALRNVMTTKKSKLLEVSLGLVAQMARFMGPHELSHHLAGAGVAGGEEELVGRLVAVLARYGSPSIRVPRIRRFAVELAVAMMTEGRRRRGAVAVMMAAAGMGPVLRRVAETTSELECFHVFSGSAGLSRHAVSLSALVDTALELMGARGTDDQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 4.366446 0.243147

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0528100 RBH 0.0 0.0 0.021608
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g34360 RBH 0.0 0.0 0.028594
Nipponbare | IRGSP 1.0 | RAP-db Os12g0528100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0015480 RBH 0.0 0.947338 0.912032
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0015620 RBH 0.0 0.400824 0.298068
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0015980 RBH 0.0 0.525540 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0015300 RBH 0.0 0.010993 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0014870 RBH 0.0 0.0 0.421454
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0272500 RBH 0.501722 0.277328 0.020758
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0015020 RBH 0.0 0.0 0.045783
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0303700 RBH 0.901005 0.2512125 0.002004
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0015240 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0015410 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0015500 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0015260 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0015430 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G015500 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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