Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_12g0015980 | OGI:12054530 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr12:21239369-21242051 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacaaccatggcggcgacggtggcgccggcggcggtggaggaggagagggagagaggtcggtgcgggtgaatattgaagctcaggcgagtgatccggcggggatggtggtggcgatggcgacgccgttcgagccgcagctgtcggacgattcgccgccgaggtcgagcatgcagagcgtcgcggaggtcgtcgacgacgcggcggcggcggaggcgaccggaggaggaggggacgaggtggtggcggtggcggcggtggggccggagcggaggctgacgatgctggcgctgcggctggcgatcctggagaaggcggcgagcgggctgggcgcgctcggcttcatctgggccaccgtcgtgctcctcggcggcttcgccatcacgctcgggagggtggacttctggtcggtcaccgtcatcctcctcgtcgagggcgcccgcatcttcagccgcagccacgagctggagtggcagcaccaggccacgtggtcgctcgccgccgcaggccgctccagcttccgcctcgtcgcccgctccttccgcttcgtgttccacctcgacgacggcaaggccgccgccgacgccggcggcggcggcggcggcgcgccgaggatggggcgacggcgatggcggatcagctggagcttcctgtcgcggcacgtcgggagggtgttctactggctgcagctggcgtcggcgacggcgtgcgtcgcggtgtcggcggtgaggctcgctgggcaagacttcggcgaggcggaggacgcgcggaccaaccggaggtcggcgctggacatcttctacgggctcgcgctggcggaggcgctgctgttcttgatggagaaggcgatgtgggagtgggaggtgagctacggccgcctcctccagcgcgtcgccggcgagtgccacctcgccggcgagcccgggctggtcgccgtccgccgcttcttctacgacgcctactcccggtgcgtcgacgggagcatcttcgacggcctccggatggacctcgtctccttcgccgaggagctcctcgtcgggggctcccacgacgagcagcgcatcggcgtcgggatcctcgtcaacgtcgcggcgaacccgcggctcggggaggccgcgctgcggcgcgtcggcacgtcggcggcggtggtggaccggctggtggagatgctcacctggagcggcggcgccgccgaggccgccgccagggcgtccgccgcgctcgtcgtgtccaagctcgccagcaagaagcggaacgcgctccgcgtcgccggcgtccccggcgccatcgagtcggtgtcgtcgctgctctacgccgccggcgacgaggagtgcaacctcctcggcctcctcatcatcaagaagctggcgcgcgaccacgacaactgcagcaagatcggcaacgcgcgcggcctcctcgacaagatcatcgacttctccgccatcggcggcggcgccgtgatcacgccgtcgcgcgccaaggccgtgaagcggtcgctgcaggtggtgaagatgctcgcggagacgacggggagcaccgggaagctgctccggcgggaggtcgccgagatcgtgttcacggtgagcaacatccgcgccgtgctccagcacggcgccggccacctcgagctgcagcggctcggcgccgaggtgctcacccgcctcgccatggacgcggacgcgcgcgagaagatcggcggcaccggcggcgtcgtctccctcctcctcgccatgttcctccagccctccatcaccgacgagggcgacgccgcgcgcgtcgaggccggcgaggcgctcgccatgctcgccctcgacagccgccgcaactgcgaccgcatactccgcgccggcggcggcggcggcgccgccaccgtcgcccgcctcgtcgacgcgcttaccgacgacgaggccggcatcggcgcggcccggatcctgaccaacctctgcgcgtacgccggcggcgagtggttctccgacctccacctcgtcacctccggcgccgccacggcgctgcgcaacgtgatgaccaccaagaagtccaagctgctcgaggtctccctggggctcgtcgcccagatggcgcggttcatgggcccgcacgagctgtcccaccacctcgccggcgccggcgtcgccggcggcgaggaggagctggtcggacggctggtcgccgtgctggcgaggtacggctccccgtcgatccgggtgccgcggatccggcggttcgccgtggagctcgccgtcgcgatgatgacggaggggaggcggcggcgcggcgcggtggcggtgatgatggcggcggccgggatggggccggtgctgcggcgcgtggcggagaccacgtcggagctcgagtgcttccacgtcttctccggcagcgccgggctgagccgccacgccgtctccctctccgccctcgtcgacaccgcgctcgagctcatgggggcacgtggcaccgacgaccaatagaaaaccgccacgtcagcatctcgcatgtcttcttttccaacaaaagaaaaagaaaatcacacgggttaatttgattaaattaattaattaattattatacgattcttttgagcattgtaatacaaggatcacacaatgattggggttatcaatgagaaagatcgaatttcagtgatttaattaaattttttaatgcattttgtacatggatgct
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| CDS seq | atggacaaccatggcggcgacggtggcgccggcggcggtggaggaggagagggagagaggtcggtgcgggtgaatattgaagctcaggcgagtgatccggcggggatggtggtggcgatggcgacgccgttcgagccgcagctgtcggacgattcgccgccgaggtcgagcatgcagagcgtcgcggaggtcgtcgacgacgcggcggcggcggaggcgaccggaggaggaggggacgaggtggtggcggtggcggcggtggggccggagcggaggctgacgatgctggcgctgcggctggcgatcctggagaaggcggcgagcgggctgggcgcgctcggcttcatctgggccaccgtcgtgctcctcggcggcttcgccatcacgctcgggagggtggacttctggtcggtcaccgtcatcctcctcgtcgagggcgcccgcatcttcagccgcagccacgagctggagtggcagcaccaggccacgtggtcgctcgccgccgcaggccgctccagcttccgcctcgtcgcccgctccttccgcttcgtgttccacctcgacgacggcaaggccgccgccgacgccggcggcggcggcggcggcgcgccgaggatggggcgacggcgatggcggatcagctggagcttcctgtcgcggcacgtcgggagggtgttctactggctgcagctggcgtcggcgacggcgtgcgtcgcggtgtcggcggtgaggctcgctgggcaagacttcggcgaggcggaggacgcgcggaccaaccggaggtcggcgctggacatcttctacgggctcgcgctggcggaggcgctgctgttcttgatggagaaggcgatgtgggagtgggaggtgagctacggccgcctcctccagcgcgtcgccggcgagtgccacctcgccggcgagcccgggctggtcgccgtccgccgcttcttctacgacgcctactcccggtgcgtcgacgggagcatcttcgacggcctccggatggacctcgtctccttcgccgaggagctcctcgtcgggggctcccacgacgagcagcgcatcggcgtcgggatcctcgtcaacgtcgcggcgaacccgcggctcggggaggccgcgctgcggcgcgtcggcacgtcggcggcggtggtggaccggctggtggagatgctcacctggagcggcggcgccgccgaggccgccgccagggcgtccgccgcgctcgtcgtgtccaagctcgccagcaagaagcggaacgcgctccgcgtcgccggcgtccccggcgccatcgagtcggtgtcgtcgctgctctacgccgccggcgacgaggagtgcaacctcctcggcctcctcatcatcaagaagctggcgcgcgaccacgacaactgcagcaagatcggcaacgcgcgcggcctcctcgacaagatcatcgacttctccgccatcggcggcggcgccgtgatcacgccgtcgcgcgccaaggccgtgaagcggtcgctgcaggtggtgaagatgctcgcggagacgacggggagcaccgggaagctgctccggcgggaggtcgccgagatcgtgttcacggtgagcaacatccgcgccgtgctccagcacggcgccggccacctcgagctgcagcggctcggcgccgaggtgctcacccgcctcgccatggacgcggacgcgcgcgagaagatcggcggcaccggcggcgtcgtctccctcctcctcgccatgttcctccagccctccatcaccgacgagggcgacgccgcgcgcgtcgaggccggcgaggcgctcgccatgctcgccctcgacagccgccgcaactgcgaccgcatactccgcgccggcggcggcggcggcgccgccaccgtcgcccgcctcgtcgacgcgcttaccgacgacgaggccggcatcggcgcggcccggatcctgaccaacctctgcgcgtacgccggcggcgagtggttctccgacctccacctcgtcacctccggcgccgccacggcgctgcgcaacgtgatgaccaccaagaagtccaagctgctcgaggtctccctggggctcgtcgcccagatggcgcggttcatgggcccgcacgagctgtcccaccacctcgccggcgccggcgtcgccggcggcgaggaggagctggtcggacggctggtcgccgtgctggcgaggtacggctccccgtcgatccgggtgccgcggatccggcggttcgccgtggagctcgccgtcgcgatgatgacggaggggaggcggcggcgcggcgcggtggcggtgatgatggcggcggccgggatggggccggtgctgcggcgcgtggcggagaccacgtcggagctcgagtgcttccacgtcttctccggcagcgccgggctgagccgccacgccgtctccctctccgccctcgtcgacaccgcgctcgagctcatgggggcacgtggcaccgacgaccaatag
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| Protein seq | MDNHGGDGGAGGGGGGEGERSVRVNIEAQASDPAGMVVAMATPFEPQLSDDSPPRSSMQSVAEVVDDAAAAEATGGGGDEVVAVAAVGPERRLTMLALRLAILEKAASGLGALGFIWATVVLLGGFAITLGRVDFWSVTVILLVEGARIFSRSHELEWQHQATWSLAAAGRSSFRLVARSFRFVFHLDDGKAAADAGGGGGGAPRMGRRRWRISWSFLSRHVGRVFYWLQLASATACVAVSAVRLAGQDFGEAEDARTNRRSALDIFYGLALAEALLFLMEKAMWEWEVSYGRLLQRVAGECHLAGEPGLVAVRRFFYDAYSRCVDGSIFDGLRMDLVSFAEELLVGGSHDEQRIGVGILVNVAANPRLGEAALRRVGTSAAVVDRLVEMLTWSGGAAEAAARASAALVVSKLASKKRNALRVAGVPGAIESVSSLLYAAGDEECNLLGLLIIKKLARDHDNCSKIGNARGLLDKIIDFSAIGGGAVITPSRAKAVKRSLQVVKMLAETTGSTGKLLRREVAEIVFTVSNIRAVLQHGAGHLELQRLGAEVLTRLAMDADAREKIGGTGGVVSLLLAMFLQPSITDEGDAARVEAGEALAMLALDSRRNCDRILRAGGGGGAATVARLVDALTDDEAGIGAARILTNLCAYAGGEWFSDLHLVTSGAATALRNVMTTKKSKLLEVSLGLVAQMARFMGPHELSHHLAGAGVAGGEEELVGRLVAVLARYGSPSIRVPRIRRFAVELAVAMMTEGRRRRGAVAVMMAAAGMGPVLRRVAETTSELECFHVFSGSAGLSRHAVSLSALVDTALELMGARGTDDQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_12g0015980 | OsCMeo_12g0015980.01 | Chr12 | 21239369 | 21242051 | + | NAM | ||
| CDS seq | atggacaaccatggcggcgacggtggcgccggcggcggtggaggaggagagggagagaggtcggtgcgggtgaatattgaagctcaggcgagtgatccggcggggatggtggtggcgatggcgacgccgttcgagccgcagctgtcggacgattcgccgccgaggtcgagcatgcagagcgtcgcggaggtcgtcgacgacgcggcggcggcggaggcgaccggaggaggaggggacgaggtggtggcggtggcggcggtggggccggagcggaggctgacgatgctggcgctgcggctggcgatcctggagaaggcggcgagcgggctgggcgcgctcggcttcatctgggccaccgtcgtgctcctcggcggcttcgccatcacgctcgggagggtggacttctggtcggtcaccgtcatcctcctcgtcgagggcgcccgcatcttcagccgcagccacgagctggagtggcagcaccaggccacgtggtcgctcgccgccgcaggccgctccagcttccgcctcgtcgcccgctccttccgcttcgtgttccacctcgacgacggcaaggccgccgccgacgccggcggcggcggcggcggcgcgccgaggatggggcgacggcgatggcggatcagctggagcttcctgtcgcggcacgtcgggagggtgttctactggctgcagctggcgtcggcgacggcgtgcgtcgcggtgtcggcggtgaggctcgctgggcaagacttcggcgaggcggaggacgcgcggaccaaccggaggtcggcgctggacatcttctacgggctcgcgctggcggaggcgctgctgttcttgatggagaaggcgatgtgggagtgggaggtgagctacggccgcctcctccagcgcgtcgccggcgagtgccacctcgccggcgagcccgggctggtcgccgtccgccgcttcttctacgacgcctactcccggtgcgtcgacgggagcatcttcgacggcctccggatggacctcgtctccttcgccgaggagctcctcgtcgggggctcccacgacgagcagcgcatcggcgtcgggatcctcgtcaacgtcgcggcgaacccgcggctcggggaggccgcgctgcggcgcgtcggcacgtcggcggcggtggtggaccggctggtggagatgctcacctggagcggcggcgccgccgaggccgccgccagggcgtccgccgcgctcgtcgtgtccaagctcgccagcaagaagcggaacgcgctccgcgtcgccggcgtccccggcgccatcgagtcggtgtcgtcgctgctctacgccgccggcgacgaggagtgcaacctcctcggcctcctcatcatcaagaagctggcgcgcgaccacgacaactgcagcaagatcggcaacgcgcgcggcctcctcgacaagatcatcgacttctccgccatcggcggcggcgccgtgatcacgccgtcgcgcgccaaggccgtgaagcggtcgctgcaggtggtgaagatgctcgcggagacgacggggagcaccgggaagctgctccggcgggaggtcgccgagatcgtgttcacggtgagcaacatccgcgccgtgctccagcacggcgccggccacctcgagctgcagcggctcggcgccgaggtgctcacccgcctcgccatggacgcggacgcgcgcgagaagatcggcggcaccggcggcgtcgtctccctcctcctcgccatgttcctccagccctccatcaccgacgagggcgacgccgcgcgcgtcgaggccggcgaggcgctcgccatgctcgccctcgacagccgccgcaactgcgaccgcatactccgcgccggcggcggcggcggcgccgccaccgtcgcccgcctcgtcgacgcgcttaccgacgacgaggccggcatcggcgcggcccggatcctgaccaacctctgcgcgtacgccggcggcgagtggttctccgacctccacctcgtcacctccggcgccgccacggcgctgcgcaacgtgatgaccaccaagaagtccaagctgctcgaggtctccctggggctcgtcgcccagatggcgcggttcatgggcccgcacgagctgtcccaccacctcgccggcgccggcgtcgccggcggcgaggaggagctggtcggacggctggtcgccgtgctggcgaggtacggctccccgtcgatccgggtgccgcggatccggcggttcgccgtggagctcgccgtcgcgatgatgacggaggggaggcggcggcgcggcgcggtggcggtgatgatggcggcggccgggatggggccggtgctgcggcgcgtggcggagaccacgtcggagctcgagtgcttccacgtcttctccggcagcgccgggctgagccgccacgccgtctccctctccgccctcgtcgacaccgcgctcgagctcatgggggcacgtggcaccgacgaccaatag
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| Protein seq | MDNHGGDGGAGGGGGGEGERSVRVNIEAQASDPAGMVVAMATPFEPQLSDDSPPRSSMQSVAEVVDDAAAAEATGGGGDEVVAVAAVGPERRLTMLALRLAILEKAASGLGALGFIWATVVLLGGFAITLGRVDFWSVTVILLVEGARIFSRSHELEWQHQATWSLAAAGRSSFRLVARSFRFVFHLDDGKAAADAGGGGGGAPRMGRRRWRISWSFLSRHVGRVFYWLQLASATACVAVSAVRLAGQDFGEAEDARTNRRSALDIFYGLALAEALLFLMEKAMWEWEVSYGRLLQRVAGECHLAGEPGLVAVRRFFYDAYSRCVDGSIFDGLRMDLVSFAEELLVGGSHDEQRIGVGILVNVAANPRLGEAALRRVGTSAAVVDRLVEMLTWSGGAAEAAARASAALVVSKLASKKRNALRVAGVPGAIESVSSLLYAAGDEECNLLGLLIIKKLARDHDNCSKIGNARGLLDKIIDFSAIGGGAVITPSRAKAVKRSLQVVKMLAETTGSTGKLLRREVAEIVFTVSNIRAVLQHGAGHLELQRLGAEVLTRLAMDADAREKIGGTGGVVSLLLAMFLQPSITDEGDAARVEAGEALAMLALDSRRNCDRILRAGGGGGAATVARLVDALTDDEAGIGAARILTNLCAYAGGEWFSDLHLVTSGAATALRNVMTTKKSKLLEVSLGLVAQMARFMGPHELSHHLAGAGVAGGEEELVGRLVAVLARYGSPSIRVPRIRRFAVELAVAMMTEGRRRRGAVAVMMAAAGMGPVLRRVAETTSELECFHVFSGSAGLSRHAVSLSALVDTALELMGARGTDDQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.525540 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0528100 | RBH | 0.0 | 0.0 | 0.021608 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34360 | RBH | 0.0 | 0.0 | 0.028594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0528100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015480 | RBH | 0.0 | 0.947338 | 0.912032 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015620 | RBH | 0.0 | 0.400824 | 0.298068 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015300 | RBH | 0.0 | 0.010993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014870 | RBH | 0.0 | 0.0 | 0.421454 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0272500 | RBH | 0.501722 | 0.277328 | 0.020758 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015020 | RBH | 0.0 | 0.0 | 0.045783 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0303700 | RBH | 0.901005 | 0.2512125 | 0.002004 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015260 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015220 | RBH | 0.0 | 4.366446 | 0.243147 |
