Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0014930 | OGI:12050570 | 3/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:19215128-19219072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggcggaatcccatgtattgaaagtataggtgggactGgggttcaccagagtggccccgagcctcatcacctaggaTtaccatttTAtttttaaagatattctatgcatgccatttatttgttaatgattgttttactggggaaatgggtatcctggttcccatttcgtcgacaaagtgtcacaaaaATtaagattacgtagcagatttattacaaaactacaggtttagtgtcaaTttatctcaaaagtacaatgtttatagctccaacataattttagtactagggatttaaactctaaaatttatagttttgactattttgtgataacttcaatactaaatatgttactgtggagattatgggtacccAtacccacacggcatggttatccgactggttataggggatagcttatatctatgaaatatgcaacggagcatgacttgggtattacatttccgtgtataatatggaatggcctaaagtcctgaTttgataatattgtagagtagatttaggaaaccgataccgtattgcttaaggtttctatcttgtaatcctgccccctatcctatataaggtgggcaggaggaccctttagggggaattcacaactagatcgtcagatcaatactacacctGgtggattcaaatccccaaacagaagtagggtattacctctcattgagagcgcctgAacctatctcaatccttgtctccgcatccatccacttttagttctcgtgcgctaccccctttatattgccgaaatcttgtttcgacagtagcagtgcgatggaatcAatttcagaagaagtgttgagattaatctcaatgagtttcatggctcaaatcttcaatctaggtttgtattttctgatctaatttttattggattaatttctagtagcagtttgatcttgggcgttttcttgtttccatgtgcttgccGgccgagattgagacggagataacttatcaagatttacAaaaatatgacaacttcAaatagcattttgaaatactaaatgatttcaactgAaaaagtcatcaacaacaaagttatataactcatcaagatatataacttttatttttgtcatgtcttcatccacaaagtgatagtaacattatttacaaaatccacatatctctcatctGgttttataaactataacagagatatgttaattttgtgaacAatgttactaacactttgtcggatgaagaaatgacaaaaatAaaagttatagatcttgatgagttatacaactctaatgttgataactttttagttgaaatcatttagtatttgaaaatgttatttgaagttgtaatattttcaaattcaaattcaaactgttcAaaaaaagagttatatagaaaaatgaccaaaataaaagttatacaattttgttgttgatgacttttttagttgaaatcatttagtatttgaaaatgttgttttgaagttgtcatattttcaaattcaaattcaaactgttcaaaaaaatattatatagaaaaATgatcaaaataaaagttgtaaatcttgataagttatataactttgttgttgacaatttttccatttgaaatcatttatgatttgAaaatattgtttgaagttgtcatattttcaaattcaaattcatactgttcaaaaaaagttgtatagaaaatgaccaaaataaaagatgtaatcttgataagttatacaactttgttgttgattatttttccatttgaaatcaTttagtaTttgaaaatattgtttgaagttgtcatttttcaaattcaaattcaaacggttcaaaaaaaagttatatagaaaaggaccaaaataaaagttgtaaatcttgataagttatacaacttagttgttgacgtatttttcatttgaaatcattttgtatttcaaaatattgtttaaagttatcatatttttAaattcaaattcaaactgttcaaaaaaaaagttatatagaaaaatgcccaaaataaaagttgtgaatattgataagttatacaactttgttgttgacaatttttctatttgAaatcatttactacccaaaaaattattttgactaataaaatAaattattatactgcagttaattattttgctacaggtcaactcacagatataaacatttcatatgaaaaatggAaaaatactAaatcatcacaatcgggcattagtatagagcccgtcacggatgagtcatctgtAacGggcctagttgttaccgattgagatatggtcgcacagacatgttgcatgggtataaaactcaggcccgtctcggatgacacctattagtgatgggtcgttgtttaggcccgattgagataacatttcatatctcaatcgggCcacaagttggtacccatcacataaactactaccagtcactgacaGgtgtcatccAtgacaggcctgagttttatgcccatctaacatgtaTgtgcgatcatctctcaaccggacgctttttcggcccgattgagaagacttccttgtgatggcccgctaattccaGgcatattagagaccgtcacggatagaaggttatgtactagtgggtgatggttttttagaatcatactgatttttaatttgtcctttgacaatatggcattatgaatctattatattatcacacaacatttattttttttatgttgcggccatataataatagatatactggtttatttatgcataTtttcaccaatttgggatggttctatattaaaattaatgcaaatcaaatataatattaataaataaaaattagtgattcgactagtgacccAgcGgttcgaccggtgaaccgacggccagagcgggtcaaaccccgttccagttctatgattgtactctttcacgtttctattggcaactttttgtgacaagttgacaagcacgatcgcagcacctaaagctttgcggtgactctagagtcgccaaccacctcaatctagcaaaagctaaatcAagatgggttttgataaactaaaccGgctagtggaaccgatctagatAgaatgataggtaactacccgtctcgtgtgcAaaacagaaggttttcaagacaaacctacaaagaggtgtgtcactctcgcagcggcggAggacgatttacagcacaaatcgataaagatggacaaactAaactaaaactagaagcataagtaaaagaacgattcgatttcttgatagttgattgagagattacaattgaaccggccttgtcccttatataggggttggtcttgccctctacaggccctcctccacgttcaactaGggatagaatccaaaGgaaacccgaaacatgccttcccgagcaaggaaacttcgagaccggtacacggcggtcagactggtctcctagaggaaacactgatagattcatccaaactttgtcaaTtttcctaTtttaatcctatgtgctAaatttgggtataaacagtttctacgttaattgaagggatagtatAaataGttatgatctAatggttAaaaagatattaattAatggtttgacttaatttctactatagtAGagagcatcctagcatcgtaggactcaagaaaatttgactgtttaatattaagtagtcGgattgaatgacaagccatacagttcctacgttatacaaacataaggcagAaaaaaaaaggtaactgacgcatagaatggtgaggaGagactaacccagctgttgcggcaagtgtaatcactgcaagacaccaaaaatctttcttatccagcatggagacgtaaccacccaagaggacaacaGttgtccatgtaaAcaccaagaaacccagacccttgacggccatggagagatgtcccataaacatggcaaatttgttgatattgtccActtctggccaccaagagctgtcatgaacatcttccat
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| CDS seq | atggaagatgttcatgacagctcttggtggccagaagTggacaatatcaacaaatttgccatgtttatgggacatctctccatggccgtcaagggtctgggtttcttggtgTttacatggacaaCtgttgtcctcttgggtggttacgtctccatgctggataagaaagatttttgtgattacacttgccgcaacagctgggtgatgaggctcggggccactctggtgaacccCagtcccacctatactttcaatacatgggattccgcctga |
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| Protein seq | MEDVHDSSWWPEVDNINKFAMFMGHLSMAVKGLGFLVFTWTTVVLLGGYVSMLDKKDFCDYTCRNSWVMRLGATLVNPSPTYTFNTWDSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0014930 | OsNaBo_12g0014930.01 | Chr12 | 19215128 | 19219072 | - | NAM | ||
| CDS seq | atggaagatgttcatgacagctcttggtggccagaagTggacaatatcaacaaatttgccatgtttatgggacatctctccatggccgtcaagggtctgggtttcttggtgTttacatggacaaCtgttgtcctcttgggtggttacgtctccatgctggataagaaagatttttgtgattacacttgccgcaacagctgggtgatgaggctcggggccactctggtgaacccCagtcccacctatactttcaatacatgggattccgcctga
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| Protein seq | MEDVHDSSWWPEVDNINKFAMFMGHLSMAVKGLGFLVFTWTTVVLLGGYVSMLDKKDFCDYTCRNSWVMRLGATLVNPSPTYTFNTWDSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.588451 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0549800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36340 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0549800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008510 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008620 | SBH | 0.0 | 0.0 | 0.939047 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008650 | SBH | 0.0 | 0.0 | 0.693431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008450 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008360 | SBH | 10.324962 | 0.0 | 36.722248 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008270 | SBH | 0.0 | 0.0 | 0.455184 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008190 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016360 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016600 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015180 | RBH | 1.664060 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016050 | SBH | 0.0 | 1.523927 | 0.0 |
