Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0008190 | OGI:12024450 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:8328148-8328381 | ||||||||
| Gene Symbol | PTR, Ptr, OsPtr, Ptr(t), Pita2, - | ||||||||||
| DNA seq | atggctgAcaatgtcgatgatgactctcaatgggtggaagtggtgatgatcaatagttatgccctatttatggggtacttgtccatggccatcagagggatgggcttcctggtggttttgtggactaccgtcatcctcctcggtGgcttcgtctccatgctcgagaagaaggacttctggagtctcaccgtcatcaccctcgcacaaacaactgggttagtgatctatatttaa |
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| CDS seq | atggctgAcaatgtcgatgatgactctcaatgggtggaagtggtgatgatcaatagttatgccctatttatggggtacttgtccatggccatcagagggatgggcttcctggtggttttgtggactaccgtcatcctcctcggtGgcttcgtctccatgctcgagaagaaggacttctggagtctcaccgtcatcaccctcgcacaaacaactgggttagtgatctatatttaa |
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| Protein seq | MADNVDDDSQWVEVVMINSYALFMGYLSMAIRGMGFLVVLWTTVILLGGFVSMLEKKDFWSLTVITLAQTTGLVIYI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0008190 | OsLima_12g0008190.01 | Chr12 | 8328148 | 8328381 | + | NAM | ||
| CDS seq | atggctgAcaatgtcgatgatgactctcaatgggtggaagtggtgatgatcaatagttatgccctatttatggggtacttgtccatggccatcagagggatgggcttcctggtggttttgtggactaccgtcatcctcctcggtGgcttcgtctccatgctcgagaagaaggacttctggagtctcaccgtcatcaccctcgcacaaacaactgggttagtgatctatatttaa
More
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| Protein seq | MADNVDDDSQWVEVVMINSYALFMGYLSMAIRGMGFLVVLWTTVILLGGFVSMLEKKDFWSLTVITLAQTTGLVIYI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0549800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16080 | SBH | 0.147020 | 0.249923 | 0.091188 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0549800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008510 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008620 | RBH | 0.0 | 0.0 | 0.939047 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008650 | RBH | 0.0 | 0.0 | 0.693431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0008360 | RBH | 10.324962 | 0.0 | 36.722248 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0126800 | RBH | 0.8899125 | 0.2594345 | 0.119856 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0008270 | RBH | 0.0 | 0.0 | 0.455184 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0136400 | RBH | 2.879985 | 0 | 2.3564745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016290 | SBH | 0.0 | 0.051140 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0008500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0008370 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0008570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008390 | RBH | 0.0 | 0.0 | 2.304762 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0008250 | RBH | 0.0 | 0.0 | 0.0 |
