Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_12g0013600 OGI:12050650 | 4/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr12:17857353-17860049
Gene Symbol -
DNA seq

acagataacgcaatatatagtactatccacgcttctgactaaaaatccgtaccagtacggtcattcgtgctcgtcgatcagtttgccgcgcgcgcgccattagtgcaaacgatttcctcttcgccgcagtggcctggctaggtgcagtggcattcgccgccgccgccgattcccgcggctgtactccatccgggccggattgctcgacgacggacaactacgacaccaccaacagccagtaccatcatctgatcaatccgaaccaactcctcaatagcctccccgtgaaggccaggatgaacggcggtttctacaacgattcgcttggcaagcctgctcctccgccgagcgtcgacccaattcagggcccaactaaggcggcagacccgcaggcttcgccgtcattaccatctccggtgccgggtacatgctgaaattctctttatttctttcgttcttccaaacaaattaaaaagcaatcctgtatggacatcagctagcgagtccgtggaatattttgaggacaaattgacagtgatggcctcggtttgcctagttttaatggggattaggatataattaagtgatgacgaatggatttatggatcgatctaactgctatacttatactgatcaaagtccctcggagtacaccgtaccccagctaggtattaaaattatggagttcgggaacaaacccgtcaaatccttaattgaaaaataaaatatacgtcagccgtagattttataaaacagttttaatataaaaattgatgaacagaagtttttgacccattatttatcctaaccgttaactaatactttctccgtttcacaatataagactttctagcattgcccatatttatttagatgttaatgaatctagacactctatatgtatgtgcgtaatactagaaagtcttatattgtgaaacggagggagtaattagtaggtgatcgatgtgtcgaagcaaatcagagaagaaacatgaaaagttacatgcatgcatgttaattcctgatgaaaaactatgcgtagaagtatacaattcataaactatgccttcctgtggtcctatgacgggataccgttctatagtttttccgttattaaaggcctcaaacaaatctagctagccatgtccatgcgccatactctgatagttatttaaaacactgaatttttgcgttctgttaattatcctacaagttgttatcagtggagtattaaccaacaggaatttgtttcccacagacaataagcccaaaatggacgtacggctggttgccagcctatgtagtgccggtgcagtcttagccgtcggactatgcgtagtcatagcgtgcctcgtagtgcggcggaagagaagaaagatgaaagatatggaagaagccggtttgttcgatgatgaagacattggcaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggttcttgagagacctgaaccttgacgtcgcaataaagcaagtgtccaagaactccaagcaggggaagaaagagtacgtctcggaggtgagggtcatcagccggcttcggcaccggaacctggttcagctcatgggctggtgccatggcggcggcaacctcctgctcgtctacgagctgatgcccaatggcagcctggacgcacacctccactgcaccaccggcagcaagctaccactgccatggatggtaaggcacgagatcgtgctcggcgttggcgaggccctgctgtacctgcaccaggactgggagcagtgcgtgctgcaccgtgacatcaagacgagcaacatcatgctggacgcctcctacaacgccaagctcggcgacttcgggctggcgaggctggtcgaccatgcccggggcacacgcaccacggtgctcgccggcacgctggggtacatggacccggagtgcgtgatcatcggcaaagcctgcgtcgagtcggacgtctacagcttcggcgtcgtcctgctcgaggtcgcctgtggccggaaacccgccgttgtcttgccggacgatgacgacgacagcgccgtcatccatctagcgcagctggtatgggaccagtactacggccagggccgcctcctcgacgcggcggatccacggctgaacggggagttcgacgagcaggagatggagcgcgtgctggtggtcggcctatggtgcgcgcaccctgaccgtgccatgagggcgtccatcaggcaggccgtcagcgtgctacggcatgaggcgccgctgccgagactcccggcgaagatgccggtggccaccttcctcccggcggttgatcgtcgcagtttggttggttcggttgatcactccagctccagtgctccagctgtaccgccggctgaactgttacacaatatgaatatttgagttcgtgacatgtgcacaggtacaaggaagttgaattcctttttctgttgaatcatttttctgtagtttttaaaatattcgatggtgcttattaggataggacgtgggtgtgagtttatatggatgaatatgcgtatgtcatttatttaaacaaaatatctcttgatgagaataaaaggttgttgggggaataaccccatacttagaata

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CDS seq

atggacgtacggctggttgccagcctatgtagtgccggtgcagtcttagccgtcggactatgcgtagtcatagcgtgcctcgtagtgcggcggaagagaagaaagatgaaagatatggaagaagccggtttgttcgatgatgaagacattggcaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggttcttgagagacctgaaccttgacgtcgcaataaagcaagtgtccaagaactccaagcaggggaagaaagagtacgtctcggaggtgagggtcatcagccggcttcggcaccggaacctggttcagctcatgggctggtgccatggcggcggcaacctcctgctctcggacgtctacagcttcggcgtcgtcctgctcgaggtcgcctgtggccggaaacccgccgttgtcttgccggacgatgacgacgacagcgccgtcatccatctagcgcagctggtatgggaccagtactacggccagggccgcctcctcgacgcggcggatccacggctgaacggggagttcgacgagcaggagatggagcgcgtgctggtggtcggcctatggtgcgcgcaccctgaccgtgccatgagggcgtccatcaggcaggccgtcagcgtgctacggcatgaggcgccgctgccgagactcccggcgaagatgccggtggccaccttcctcccggcggttgatcgtcgcagtttggttggttcggttgatcactccagctccagtgctccagctgtaccgccggctgaactgttacacaatatgaatatttga

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Protein seq

MDVRLVASLCSAGAVLAVGLCVVIACLVVRRKRRKMKDMEEAGLFDDEDIGNVFDNATGPKRYRYSELAIATDDFSDDKKLGEGGFGSVYKGFLRDLNLDVAIKQVSKNSKQGKKEYVSEVRVISRLRHRNLVQLMGWCHGGGNLLLSDVYSFGVVLLEVACGRKPAVVLPDDDDDSAVIHLAQLVWDQYYGQGRLLDAADPRLNGEFDEQEMERVLVVGLWCAHPDRAMRASIRQAVSVLRHEAPLPRLPAKMPVATFLPAVDRRSLVGSVDHSSSSAPAVPPAELLHNMNI

Function L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0013600 OsNaBo_12g0013600.01 Chr12 17858625 17859839 + NAM
CDS seq

atggacgtacggctggttgccagcctatgtagtgccggtgcagtcttagccgtcggactatgcgtagtcatagcgtgcctcgtagtgcggcggaagagaagaaagatgaaagatatggaagaagccggtttgttcgatgatgaagacattggcaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggttcttgagagacctgaaccttgacgtcgcaataaagcaagtgtccaagaactccaagcaggggaagaaagagtacgtctcggaggtgagggtcatcagccggcttcggcaccggaacctggttcagctcatgggctggtgccatggcggcggcaacctcctgctctcggacgtctacagcttcggcgtcgtcctgctcgaggtcgcctgtggccggaaacccgccgttgtcttgccggacgatgacgacgacagcgccgtcatccatctagcgcagctggtatgggaccagtactacggccagggccgcctcctcgacgcggcggatccacggctgaacggggagttcgacgagcaggagatggagcgcgtgctggtggtcggcctatggtgcgcgcaccctgaccgtgccatgagggcgtccatcaggcaggccgtcagcgtgctacggcatgaggcgccgctgccgagactcccggcgaagatgccggtggccaccttcctcccggcggttgatcgtcgcagtttggttggttcggttgatcactccagctccagtgctccagctgtaccgccggctgaactgttacacaatatgaatatttga

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Protein seq

MDVRLVASLCSAGAVLAVGLCVVIACLVVRRKRRKMKDMEEAGLFDDEDIGNVFDNATGPKRYRYSELAIATDDFSDDKKLGEGGFGSVYKGFLRDLNLDVAIKQVSKNSKQGKKEYVSEVRVISRLRHRNLVQLMGWCHGGGNLLLSDVYSFGVVLLEVACGRKPAVVLPDDDDDSAVIHLAQLVWDQYYGQGRLLDAADPRLNGEFDEQEMERVLVVGLWCAHPDRAMRASIRQAVSVLRHEAPLPRLPAKMPVATFLPAVDRRSLVGSVDHSSSSAPAVPPAELLHNMNI

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0013600 OsNaBo_12g0013600.02 Chr12 17857353 17860049 + IsoSeq
CDS seq

atgatgaagacattggcaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggt

Protein seq

MMKTLATSSTTPPDPSDIATASWPSPPTTSPTTRSLVRAASAPFTKG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 2.423886 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0608500 SBH 0.215580 0.226346 0.508085
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os12g0608500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0020290 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0020390 SBH 0.0 1.995993 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0006950 SBH 4.705822 58.858364 3.294276
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0020060 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0019660 SBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0257500 SBH 0.0638845 0.0620625 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0019550 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0281700 SBH 0.1864105 0.070723 0.1436315
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0013660 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0020020 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0013870 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0020010 SBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0020200 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G013780 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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