Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0013660 | OGI:12050650 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:18400830-18402044 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacgtacggctggttgccagcctatgtagtgccggtgcagtcttagccgtcggactatgcgtcgtcatagcgtgcctcgtagtgcggcggaagagaagaaagatgaaagatatggaagaagccggtttgttcgacgatgaagacattgacaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggttcttgagagacctgaaccttgacgtcgcaataaagcaagtgtccaagaactccaagcaagggaagaaagagtacgtctcggaggtgagggtcatcagccggcttcggcaccggaacctggttcagctcatgggctggtgccatggcggcggcaacctcctgctcgtctacgagctgatgcccaatggcagcctggacgcacacctccactgcaccaccggcagcaagctaccactgccatggatggtaaggcacgagatcgtgctcggcgttggcgaggccctgctgtacctgcaccaggactgggagcagtgcgtgctgcaccgtgacatcaagacgagcaacatcatgctggacgcctcctacaacgccaagctcggcgacttcgggctggcgaggctggtcgaccatgcccggggcacacgcaCcacggtgctcgccggcacgctggggtacatggacccggagtgcgtgatcatcggcaaagcctgcgtcgagtcggacgtctacagcttcggcgtcgtcctgctcgaggtcgcctgtggccggaaacccgccgttgtcttgccggacgatGACgacgacggcgccgtcatccatctagcgcagctggtatgggaccagtactacggccagggccgcctcctcgacgcggcggatccacggctgaacggggagttcgacgagcaggagatggagcgcgtgctggtggtcggcctatggtgcgcgcaccctgaccgtgccatgagggcgtccatcaggcagGCCgtcagcgtgctacggcatgaggcgccgctgccgagactcccggcgaagatgccggtggccaccttcctcccggcggttgatcgtcgcagtttggttggttcggctgatcactccagctccagtgctccacctgcaccgccggctgaactgttacacaatatgaatatttga
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| CDS seq | atggacgtacggctggttgccagcctatgtagtgccggtgcagtcttagccgtcggactatgcgtcgtcatagcgtgcctcgtagtgcggcggaagagaagaaagatgaaagatatggaagaagccggtttgttcgacgatgaagacattgacaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggttcttgagagacctgaaccttgacgtcgcaataaagcaagtgtccaagaactccaagcaagggaagaaagagtacgtctcggaggtgagggtcatcagccggcttcggcaccggaacctggttcagctcatgggctggtgccatggcggcggcaacctcctgctctcggacgtctacagcttcggcgtcgtcctgctcgaggtcgcctgtggccggaaacccgccgttgtcttgccggacgatGACgacgacggcgccgtcatccatctagcgcagctggtatgggaccagtactacggccagggccgcctcctcgacgcggcggatccacggctgaacggggagttcgacgagcaggagatggagcgcgtgctggtggtcggcctatggtgcgcgcaccctgaccgtgccatgagggcgtccatcaggcagGCCgtcagcgtgctacggcatgaggcgccgctgccgagactcccggcgaagatgccggtggccaccttcctcccggcggttgatcgtcgcagtttggttggttcggctgatcactccagctccagtgctccacctgcaccgccggctgaactgttacacaatatgaatatttga
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| Protein seq | MDVRLVASLCSAGAVLAVGLCVVIACLVVRRKRRKMKDMEEAGLFDDEDIDNVFDNATGPKRYRYSELAIATDDFSDDKKLGEGGFGSVYKGFLRDLNLDVAIKQVSKNSKQGKKEYVSEVRVISRLRHRNLVQLMGWCHGGGNLLLSDVYSFGVVLLEVACGRKPAVVLPDDDDDGAVIHLAQLVWDQYYGQGRLLDAADPRLNGEFDEQEMERVLVVGLWCAHPDRAMRASIRQAVSVLRHEAPLPRLPAKMPVATFLPAVDRRSLVGSADHSSSSAPPAPPAELLHNMNI |
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| Function | L-type lectin-domain containing receptor kinase IX.1 [UniProtKB/Swiss-Prot:Q9LXA5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0013660 | OsLima_12g0013660.01 | Chr12 | 18400830 | 18402044 | + | NAM | ||
| CDS seq | atggacgtacggctggttgccagcctatgtagtgccggtgcagtcttagccgtcggactatgcgtcgtcatagcgtgcctcgtagtgcggcggaagagaagaaagatgaaagatatggaagaagccggtttgttcgacgatgaagacattgacaacgtcttcgacaacgccaccggacccaagcgatatcgctacagcgagctggccatcgccaccgacgacttctccgacgacaagaagcttggtgagggcggcttcggctccgtttacaaagggttcttgagagacctgaaccttgacgtcgcaataaagcaagtgtccaagaactccaagcaagggaagaaagagtacgtctcggaggtgagggtcatcagccggcttcggcaccggaacctggttcagctcatgggctggtgccatggcggcggcaacctcctgctctcggacgtctacagcttcggcgtcgtcctgctcgaggtcgcctgtggccggaaacccgccgttgtcttgccggacgatGACgacgacggcgccgtcatccatctagcgcagctggtatgggaccagtactacggccagggccgcctcctcgacgcggcggatccacggctgaacggggagttcgacgagcaggagatggagcgcgtgctggtggtcggcctatggtgcgcgcaccctgaccgtgccatgagggcgtccatcaggcagGCCgtcagcgtgctacggcatgaggcgccgctgccgagactcccggcgaagatgccggtggccaccttcctcccggcggttgatcgtcgcagtttggttggttcggctgatcactccagctccagtgctccacctgcaccgccggctgaactgttacacaatatgaatatttga
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| Protein seq | MDVRLVASLCSAGAVLAVGLCVVIACLVVRRKRRKMKDMEEAGLFDDEDIDNVFDNATGPKRYRYSELAIATDDFSDDKKLGEGGFGSVYKGFLRDLNLDVAIKQVSKNSKQGKKEYVSEVRVISRLRHRNLVQLMGWCHGGGNLLLSDVYSFGVVLLEVACGRKPAVVLPDDDDDGAVIHLAQLVWDQYYGQGRLLDAADPRLNGEFDEQEMERVLVVGLWCAHPDRAMRASIRQAVSVLRHEAPLPRLPAKMPVATFLPAVDRRSLVGSADHSSSSAPPAPPAELLHNMNI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0608500 | SBH | 0.215580 | 0.226346 | 0.508085 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0608500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020290 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020390 | SBH | 0.0 | 1.995993 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006950 | SBH | 4.705822 | 58.858364 | 3.294276 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020060 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019660 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0257500 | SBH | 0.0638845 | 0.0620625 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019550 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0281700 | SBH | 0.1864105 | 0.070723 | 0.1436315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019790 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020020 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020010 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013780 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013600 | RBH | 2.423886 | 0.0 | 0.0 |
