Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0013560 | OGI:12012790 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:17807774-17812168 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaccatgacatgggccctctgggccaagatgagatccttgatgttcagccttcggcaatttcagagccactggaccaggctcagcccaagagctcgccaagaataggaccagtgcctcgcctgttagaaccaccaagagctccaatcaagaagaaagatggcaagactgtcttgtttgatcctaacagaaggcagagtgctcggttgcgttcttccagtcaggagctcacccagcctgaccccaaaatgggcatagggaagccgagaggaaaatctaccaaaaatttgaaagagttggcaggtatttcaaaccttctagctggaaatagttctttatcagcttcatattttcattctgatttaaatgaagattgtctctctacatctgattcctctccttctgactgttcaatatctttgctgcaaaagttgggagtggaaatatgcggtctatctcctgaggaggtggaagaggcgactttgggtggtgctaggaagaagaagcttccaaggccatccgaagaagacaactaggcagcctccctggactcctttgtttatcccagttttaaatggacagcagctatatctcttatcttttggttgtaagtttgtggaaccttgataacctggttgtgatgtgtggctgtcagactatttatgttactacttcaagcactgagtatgatatgcttgacatgtattcagggtattttgttcaatcaaggttgtttgttataaccttgtgtttttcctgctatatttatgtcctcgatgaatagtcaagctagaagtatgaacattctctgttggaatattcGggggatgaactccccaggaaaatccttagccttatataagcagattgatatcagtgcctaccacatcttttgtttgcaagagacaaaaaagcagaattttgttttagccgacctcaaagattttgctccaaaacgctttgattcttttgccttctccccttcacgcggtgcttcaggtggaattcttgtggcttgggtctctcgtttgcttcaagggagtacggtccaaattaatgattatgctgtgacattcaaattcacctcgaatctcaacaatgctacgtggtttttatgttgtgtttatggcccttgtgctttgccgcaacgtgatctttttgttcaatgcttgcgagaccttcagatcaatccagtggaaaattggctcatccttggtgatttcaatttttatagatcagttgataaccgaaacaagcctggggcaaatatgaatgatatccttattttcaatgatattattagtcacttgggacttttggagttgccattaaaagggaggagtttcacctggagtaatatgcaggataacccactgctggagcaattggactggttctttacttctccaagctggactctagctttcccaaacactaatgttcaagccctgacaagaagtacttttgatcatgtaccatgtgtggtaaaaatcagcactaagattcctaaaagctccatcttcagatttgagaattattgggtgcaacgggaaggtttctttgaggttgttcagtcagtctgggcccttgaccctgggtttgaggatcctgcaaagtgcatctcctttaaggtaaagcacttgaggaaaaaactactcaattggagtagaaattactcccaactgtctaaattactggtcaactcaaacagggttctagacttcttggatttgatagaggagctcaggccactatccatcttagaatggaatttcagggaaacagtaaaggcacatgttgccagactcttgcttttcagaagactctattggaagaaagatgtaccaataggtggatgctcctaggtaaggaaaataccaaatttttctaggccatggcaacagaaagattcaggataaactctattccccaagtgataaatgatgagggtacctctatttctgctcctgaagaaaaagatgatttgtttttccagaattttaagcaaagaatggggatcacaacttctccttcaatggcttttgacttgccttccctgtttgccccccagaatctggataacttgattgaccctttttacacacaggagattgatagtctaatttctttactcccggttgataaggcacctagaccagatggtttcaatggttagtttgtcaaaaaatgctggccaataattgcacaagatttctatagacttgcagcgcatttccatgctgaatgcactgatctacagtgcatcaatacatcttatattactctgatccccaaaaaacatctgcctcaaaaactaaatgattatagacccatatccttgatgagcatcagtctgaagttcctaaccaagttgttggccgacaggttacaaggggtcattctcaagattattcatgtaaattagtatgggttcatcaagggcagaacaatctaggattgtttggcttggtcttttgaatatattcatcagtgccaacaatcaaagagggaaataattctacttaaacttgactttgaaaaggcctttgacaccatagaacactcaacaataattcagataatgaaacatatgggctttcctctgaaatggctaaattgggtctccttgattttttccacagatagctcatctgttcttctaaatggtgtgccaggtgccaacttcaaatgcaaaagaggagtgaggcaaggtgatcctctttcacccctgttgtttgtccttggagcagacctcctacaagctgtagtaaacagagctttctctttaggactgttgtccaagcctatcaatgagcaagacaatcagggtttcccagttgtgcagtatgcagatgataccctcattctgcttaaggctgaccaaagagaactcttctgctttaaagcaattctgaatacttttgctcaatccacaggacttaaggtgaattatcataagtcacagctttaccccttgaatgttcccctagaaaaagtacacttgttagctggtctgttgggttgctctgtgggacaaatgcctttcacctatcttggtttaccaatggggacaacaagatctagagtgattgactttgcccctctggttgacagaattgagagaagactaacctccagctctatgttcctgccccatggagggaggctaacccttgtgaactctgtgttgtctgccatccctacatattacatgtgctcccttcagcttccagtcactgtaattgaagcaattgacaaggctaggaaaaattgcttatggagaggaaatgatactagctcgaaaggaaagtccttagcggcctggcataaagtctgtagaccaaaggaaaaaggaggcatgggtgtcattaatctgaccttgcagaacgttgctcttcttctcaagcacttggcaaaattctatcaaggggctgacctcccttgggtaaagttaatctggaattcatattatcagaccaaggttcctcacagagtttttaacaagggttctttttggtggagggacattatcaatctttctgattacttcatgagaattgcaaagtgtgaggctatctcaggtaacacagttttgttttgggacgacatgtcgaatgaccaaattaggagcatcacttacccacatctctgtggccatgccattgctagaaatgattccttggctgtcacctatgctaaaccttttgaggattgttttaagttgccactgacccaggaagcttacacagaatttctagagctaaagggagagctggatgctctgtccttagcaagtcagcagggggataattggagttttatatggggcaggaacaattacacctcaaaagctttttacaagttgaattttgcagccatgcaacctcccagacctttctgatggatctggaagagcaaatgtgtgatgaagataaaagttttcatatggcttcttttctctaataggctgaacacgagagacatgttggacaggagaaaatgcgcccccctaaatgctgatcttacttgtgtcttatgccctttacatcatagagaaactttgtctcacctgttctttcaatgcccttttagtagaaagtgttggcagaagctgagaatatcttggaacacttctctagaattctttcagatgctggtgctagcaagattgagatttcagaaaaaaggattcttggatatttgtttcattgcgtgttggcacatttgaaagcaaaggaatggaaatattttccagaatatagatccttcatttgactgctggtggaattcttttaagcatggaattcttctacatatgtgtaggatgaatgatgattttagacaattagtttctgattgggtacaaactttatagcttctatagggggttgtag
More
|
||||||||||
| CDS seq | atggaccatgacatgggccctctgggccaagatgagatccttgatgttcagccttcggcaatttcagagccactggaccaggctcagcccaagagctcgccaagaataggaccagtgcctcgcctgttagaaccaccaagagctccaatcaagaagaaagatggcaagactgtcttggggttgtag |
||||||||||
| Protein seq | MDHDMGPLGQDEILDVQPSAISEPLDQAQPKSSPRIGPVPRLLEPPRAPIKKKDGKTVLGL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0013560 | OsNaBo_12g0013560.01 | Chr12 | 17807774 | 17812168 | + | NAM | ||
| CDS seq | atggaccatgacatgggccctctgggccaagatgagatccttgatgttcagccttcggcaatttcagagccactggaccaggctcagcccaagagctcgccaagaataggaccagtgcctcgcctgttagaaccaccaagagctccaatcaagaagaaagatggcaagactgtcttggggttgtag |
|||||||
| Protein seq | MDHDMGPLGQDEILDVQPSAISEPLDQAQPKSSPRIGPVPRLLEPPRAPIKKKDGKTVLGL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15090 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005360 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005400 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005580 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0161800 | RBH | 0 | 0 | 0.0124035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0010070 | RBH | 0.0 | 0.0 | 0.122388 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0140100 | SBH | 0 | 0 | 0.082387 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0010130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
