Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0010130 | OGI:12012790 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:11219831-11222498 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagtaccagactacttgatccagggaaatggtactaatgacacgagtaaagatattgaacagtcagaaggagaggaatcagatgtagagaaacattcttcatctaaatcagaatgaaaatcagaagccgataaagaactattgccagttAaaatgtttgagatacctaccagctctttcagttttttggcagactttcccctcggcttccctatgcccattctagggtcaggttgagtgagctcttgacttgaagatctcaaccgagaactctgcctcctgtcaggatcaaacatgacagtcttgccatctctcttcttaactgatgctcttGggggttctaacaggagaggcactggtccgattcttggtgggctcttgggctgggcctggtctagtggctctgaaattgccaagggttgaacatcaaagatctcatcatggcccaggggagagcccatgtcatggtccAtatcctcatcatggcccaaaggttgaacgaccaccaggggcaactgtgaagagtgataaactagcggcaaagaatcaaaagcaacatttcttcttgggagcaccaagctaatgaaaggggcatgaaccaacagaacagttggaggcccctgaattcaatttgacagttgccttagaacctgattcctaaggaCTacttcttggattttgccctgaacagaatctagcacaaagaacacaggggaagcttcattctccaaaatagacatggccaaattttggttggggccagcacttattcctgagtttccagtattttcagggttattctCcccttgctgatcccaattcccccagggctgatcatgttgtggtggagcatctggctgcatatccatgtgatcgttatgctgttgcgtaggttcttgaaggtgaaccatcaaaggagggaggtcttcatcaccaagatgaatgtcagcaaattcagtgttgagaacaaagaccccaaaggtccatgactgtcctaggccacctctcaagggcaactccttgagcaaaaatactctcGgtactgcgtcaatgtcatcaaacacagctctgagcataacactacctggaatgggatccctctcctgccaatccaccaatcgaccaaaaaggctcacctctttattgatgtaatgctgattacggaaatcaagcggataacccaaaaacatcacccaacctcttcggtttgtatgagccgcccgccagttagaacccctatcatgatggcggaagtgaacagtgtggaacttactgtattggaaaccaaaagcctcgaccaaggtatccctaaccagaggagaacgaactgcaaacaagcccactgccaacagatggggagaacaatgaccaacaacaatgcccaactcattctaaagatgatttctaatctgaatcctatggacatcgaaaatatcctcatgaatcgctggctcaacctctgctagcttatagcattcatgtcgcctagtagggggttcgaccgacaagtccgctctaggcagacggaaagggctaccttcctggagatgcagacctagaggagtaaagcgtgccaggttgaactgcacatctgccatgggagcggaactttgatcaatgcggcccttcggcgaagtgggttttgcagattggatgagggaggtcgctttgcttgtggtagagatggagcaggagatgaaacgacggaagtgacttgttttattcccGgtgctccccttaactacccacttcgtcAaggccttcttcttactctgggccaaacagtaacgagccttatgcccataagcaaagcaggctttgaaacaaacacggaagtgacaatcagacctagaatgaccggtagcaagacactttgaacatttgaaagagcccaaagatcccgccttggacgaagatccatcgtgaagcaaattactgccagaaacttgaacaacatttcgtctaggaaaatccagacagtcAaaaactaatttcctcacaggaagaacggaaggccgattaggatcaagaatggaatccttgatggtgtcAaaaacttttttaatcagtacagctgctctagaccgagtaggttcAGaggAaaacacattagcaaacgagaccccaggtcgaatgacaccatttgagatgggttttgattttctaccaactttagtccaagaattttcctcttcaagaacccatagtgtgtactcacggtaccaatcaggacctccattcctccataagtgaaaatgaagcttgaagaattttcctcttcaagaacccatagtgtgtactcacggtaccaatcaggacctccattcctccataagtgaaaatgAagcttgaagaacttattttggaaagatttcaaggagtacatccAGaGacctaccttcctatctgacaccaaaaactataacaggaattttggagatgtcgaacccgaaaatcattggatttccccgaagacagcaattgagggcaatagccatagaatccatagAaagccGgaaggagaaatgtgaaaaacaaaccaccaaatggAaagcggatgaGggagagcggggagaattaaccGgtgatcggagacgagaccaaatctgggaggcaaaatccaatcccagtgagaaatcccacctgtccgcgAaggagagatcccccat
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| CDS seq | atgggggatctctcctTcgcggacaggtgggatttctcactgggattggattttgcctcccagatttggtctcgtctccgatcacCgtttttggtgtcagataggaaggtaggtCtCTggatgtactccttgaaatctttccaaaataagttcttcaagctTcattttcacttatggaggaatggagctgtactgattaaaaaagttttTgacaccatcaaggattccattcttgatcctaatcggccttccgttcttcctgtgaggaaattagttttTgactgtctggattttcctagacgaaatgttgttcaagtttctggcagtaatttgcttcacgatggatcttcgtccaaggcgggatctttgggctctttcaaatgttcaaagtgtcttgctaccggtcattctaggtctgattgtcacttccgtgtttgtttcaaagcctgctttgcttatgggcataaggctcgttactgtttggcccagagtaagaagaaggcctTgacgaagtgggtagttaaggggagcacCgggaataaaacaacgacctccctcatccaatctgcaaaacccacttcgccgaagggccgcattgatcaaagttccgctcccatggcagatgtgcagttcaacctggcacgctttactcctctaggtctgcatctccaggaaggtagccctttccgtctgcctagagcggacttgtcggtcgaaccccctactaggcgacatgaatgctataagctagcagaggttgagccagcgattcatgaggatattttcgataatgagttgggcattgttgttggtcattgttctccccatctgttggcagtgggcttgtttgcagttcgttctcctctggttagggataccttggtcgaggcttttggtttccaatacagtaagttccacactgttcacttccgccatcatgataggggttctaactggcgggcggctcatacaaaccgaagaggttgggtgatgtttttgggttatccgcttgatttccgtaatcagcattacatcaataaagaggtgagcctttttggtcgattggtggattggcaggagagggatcccattccaggtagtgttatgctcagagctgtgtttgatgacattgacgcagtacCgagagtatttttgctcaaggagttgcccttgagaggtggcctaggacagtcatggacctttggggtctttgttctcaacactgaatttgctgacattcatcttggtgatgaagacctccctcctttgatggttcaccttcaagaacctacgcaacagcataacgatcacatggatatgcagccagatgctccaccacaacatgatcagccctgggggaattgggatcagcaagggGagaataaccctgaaaatactggaaactcaggaataagtgctggccccaaccaaaatttggccatgtctattttggagaatgaagcttcccctgtgttctttgtgctagattctgttcagggcaaaatccaagaagtAGtccttaggaatcaggggcctccaactgttctgttggttcatgcccctttcattagcttggtgctcccaagaagaaatgttgcttttgattctttgccgctagtttatcactcttcacagttgcccctggtggtcgttcaacctttgggccatgatgaggataTggaccatgacatgggctctcccctgggccatgatgagatctttgatgttcaacccttggcaatttcagagccactagaccaggcccagcccaagagcccaccaagaatcggaccagtgcctctcctgttagaaccccCaagagcatcagttaagaagagagatggcaagactgtcatgtttgatcctgacaggaggcagagttctcggttgagatcttcaagtcaagagctcactcaacctgaccctagaatgggcatagggaagccgaggggaaagtctgccaaaaaactgaaagagctggtaggtatctcaaacatttTaactggcaatagttctttatcggcttctgattttcattctgatttagatgaagaatgtttctctacatctgattcctctccttctgactgttcaatatctttactcgtgtcattagtaccatttccctggatcaagtag
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| Protein seq | MGDLSFADRWDFSLGLDFASQIWSRLRSPFLVSDRKVGLWMYSLKSFQNKFFKLHFHLWRNGAVLIKKVFDTIKDSILDPNRPSVLPVRKLVFDCLDFPRRNVVQVSGSNLLHDGSSSKAGSLGSFKCSKCLATGHSRSDCHFRVCFKACFAYGHKARYCLAQSKKKALTKWVVKGSTGNKTTTSLIQSAKPTSPKGRIDQSSAPMADVQFNLARFTPLGLHLQEGSPFRLPRADLSVEPPTRRHECYKLAEVEPAIHEDIFDNELGIVVGHCSPHLLAVGLFAVRSPLVRDTLVEAFGFQYSKFHTVHFRHHDRGSNWRAAHTNRRGWVMFLGYPLDFRNQHYINKEVSLFGRLVDWQERDPIPGSVMLRAVFDDIDAVPRVFLLKELPLRGGLGQSWTFGVFVLNTEFADIHLGDEDLPPLMVHLQEPTQQHNDHMDMQPDAPPQHDQPWGNWDQQGENNPENTGNSGISAGPNQNLAMSILENEASPVFFVLDSVQGKIQEVVLRNQGPPTVLLVHAPFISLVLPRRNVAFDSLPLVYHSSQLPLVVVQPLGHDEDMDHDMGSPLGHDEIFDVQPLAISEPLDQAQPKSPPRIGPVPLLLEPPRASVKKRDGKTVMFDPDRRQSSRLRSSSQELTQPDPRMGIGKPRGKSAKKLKELVGISNILTGNSSLSASDFHSDLDEECFSTSDSSPSDCSISLLVSLVPFPWIK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0010130 | OsLiXu_12g0010130.01 | Chr12 | 11219831 | 11222498 | - | NAM | ||
| CDS seq | atgggggatctctcctTcgcggacaggtgggatttctcactgggattggattttgcctcccagatttggtctcgtctccgatcacCgtttttggtgtcagataggaaggtaggtCtCTggatgtactccttgaaatctttccaaaataagttcttcaagctTcattttcacttatggaggaatggagctgtactgattaaaaaagttttTgacaccatcaaggattccattcttgatcctaatcggccttccgttcttcctgtgaggaaattagttttTgactgtctggattttcctagacgaaatgttgttcaagtttctggcagtaatttgcttcacgatggatcttcgtccaaggcgggatctttgggctctttcaaatgttcaaagtgtcttgctaccggtcattctaggtctgattgtcacttccgtgtttgtttcaaagcctgctttgcttatgggcataaggctcgttactgtttggcccagagtaagaagaaggcctTgacgaagtgggtagttaaggggagcacCgggaataaaacaacgacctccctcatccaatctgcaaaacccacttcgccgaagggccgcattgatcaaagttccgctcccatggcagatgtgcagttcaacctggcacgctttactcctctaggtctgcatctccaggaaggtagccctttccgtctgcctagagcggacttgtcggtcgaaccccctactaggcgacatgaatgctataagctagcagaggttgagccagcgattcatgaggatattttcgataatgagttgggcattgttgttggtcattgttctccccatctgttggcagtgggcttgtttgcagttcgttctcctctggttagggataccttggtcgaggcttttggtttccaatacagtaagttccacactgttcacttccgccatcatgataggggttctaactggcgggcggctcatacaaaccgaagaggttgggtgatgtttttgggttatccgcttgatttccgtaatcagcattacatcaataaagaggtgagcctttttggtcgattggtggattggcaggagagggatcccattccaggtagtgttatgctcagagctgtgtttgatgacattgacgcagtacCgagagtatttttgctcaaggagttgcccttgagaggtggcctaggacagtcatggacctttggggtctttgttctcaacactgaatttgctgacattcatcttggtgatgaagacctccctcctttgatggttcaccttcaagaacctacgcaacagcataacgatcacatggatatgcagccagatgctccaccacaacatgatcagccctgggggaattgggatcagcaagggGagaataaccctgaaaatactggaaactcaggaataagtgctggccccaaccaaaatttggccatgtctattttggagaatgaagcttcccctgtgttctttgtgctagattctgttcagggcaaaatccaagaagtAGtccttaggaatcaggggcctccaactgttctgttggttcatgcccctttcattagcttggtgctcccaagaagaaatgttgcttttgattctttgccgctagtttatcactcttcacagttgcccctggtggtcgttcaacctttgggccatgatgaggataTggaccatgacatgggctctcccctgggccatgatgagatctttgatgttcaacccttggcaatttcagagccactagaccaggcccagcccaagagcccaccaagaatcggaccagtgcctctcctgttagaaccccCaagagcatcagttaagaagagagatggcaagactgtcatgtttgatcctgacaggaggcagagttctcggttgagatcttcaagtcaagagctcactcaacctgaccctagaatgggcatagggaagccgaggggaaagtctgccaaaaaactgaaagagctggtaggtatctcaaacatttTaactggcaatagttctttatcggcttctgattttcattctgatttagatgaagaatgtttctctacatctgattcctctccttctgactgttcaatatctttactcgtgtcattagtaccatttccctggatcaagtag
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| Protein seq | MGDLSFADRWDFSLGLDFASQIWSRLRSPFLVSDRKVGLWMYSLKSFQNKFFKLHFHLWRNGAVLIKKVFDTIKDSILDPNRPSVLPVRKLVFDCLDFPRRNVVQVSGSNLLHDGSSSKAGSLGSFKCSKCLATGHSRSDCHFRVCFKACFAYGHKARYCLAQSKKKALTKWVVKGSTGNKTTTSLIQSAKPTSPKGRIDQSSAPMADVQFNLARFTPLGLHLQEGSPFRLPRADLSVEPPTRRHECYKLAEVEPAIHEDIFDNELGIVVGHCSPHLLAVGLFAVRSPLVRDTLVEAFGFQYSKFHTVHFRHHDRGSNWRAAHTNRRGWVMFLGYPLDFRNQHYINKEVSLFGRLVDWQERDPIPGSVMLRAVFDDIDAVPRVFLLKELPLRGGLGQSWTFGVFVLNTEFADIHLGDEDLPPLMVHLQEPTQQHNDHMDMQPDAPPQHDQPWGNWDQQGENNPENTGNSGISAGPNQNLAMSILENEASPVFFVLDSVQGKIQEVVLRNQGPPTVLLVHAPFISLVLPRRNVAFDSLPLVYHSSQLPLVVVQPLGHDEDMDHDMGSPLGHDEIFDVQPLAISEPLDQAQPKSPPRIGPVPLLLEPPRASVKKRDGKTVMFDPDRRQSSRLRSSSQELTQPDPRMGIGKPRGKSAKKLKELVGISNILTGNSSLSASDFHSDLDEECFSTSDSSPSDCSISLLVSLVPFPWIK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g20370 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006150 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010260 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010190 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010170 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009830 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0010070 | RBH | 0.0 | 0.0 | 0.122388 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0181400 | RBH | 0.068023 | 0.291335 | 0.115165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009980 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0010260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013560 | RBH | 0.0 | 0.0 | 0.0 |
