Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0012680 | OGI:12048400 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:16751957-16752531 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatgcaacagaacaaaaggctcaacattggatcaacatatgttgcgttcacatattcaaattactttttgtccccatattctaacagaattgaactaatttggaagagcagatcttatacatttgaaagcacaattccacttctggcagttattgatttacaagcaacattttttcttatgagatacctgcagagtttgcaaaccttaagggtctccagttctaaaattatcaagaaataatatatctggcagtatcccaaatgatattggcaatatgaatgccctagagtccctggatttatcttgcaatgcattttcaggtcatattacgaccaacatctctagcttaacatttctcagttccttacatctctctaataaccacctgtcactagggatgaaaacggagcggatagtttccgtctgctccagagaaaaacggatacggatacctttcggatcggataattctcggatagttcggatacggatacgaatacggatatttcctcccagatacgaatacggatatggtatcggggtttccgtcggatacggataataattcggat
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| CDS seq | atgatgcaacagaacaaaaggctcaacattggatcaacatatgttgcgttcacatattcaaattactttttgtccccatattctaacagaattgaactaatttggaagagcagatcttatacatttgaaagcacaattccacttctggcagttattgatttacaagcaacattttttcttatgagatacctgcagaggtctccagttctaaaattatcaagaaataatatatctggcagtatcccaaatgatattggcaatatgaatgccctagagtccctggatttatcttgcaatgcattttcaggtcatattacgaccaacatctctagcttaacatttctcagttccttacatctctctaataaccacctgtcactagggatgaaaacggagcggatagtttccgtctgctccagagaaaaacggatacggatacctttcggatcggataattctcggatagttcggatacggatacgaatacggatatttcctcccagatacgaatacggatatggtatcggggtttccgtcggatacggataa
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| Protein seq | MMQQNKRLNIGSTYVAFTYSNYFLSPYSNRIELIWKSRSYTFESTIPLLAVIDLQATFFLMRYLQRSPVLKLSRNNISGSIPNDIGNMNALESLDLSCNAFSGHITTNISSLTFLSSLHLSNNHLSLGMKTERIVSVCSREKRIRIPFGSDNSRIVRIRIRIRIFPPRYEYGYGIGVSVGYG |
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| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0012680 | OsNaBo_12g0012680.01 | Chr12 | 16751957 | 16752531 | + | NAM | ||
| CDS seq | atgatgcaacagaacaaaaggctcaacattggatcaacatatgttgcgttcacatattcaaattactttttgtccccatattctaacagaattgaactaatttggaagagcagatcttatacatttgaaagcacaattccacttctggcagttattgatttacaagcaacattttttcttatgagatacctgcagaggtctccagttctaaaattatcaagaaataatatatctggcagtatcccaaatgatattggcaatatgaatgccctagagtccctggatttatcttgcaatgcattttcaggtcatattacgaccaacatctctagcttaacatttctcagttccttacatctctctaataaccacctgtcactagggatgaaaacggagcggatagtttccgtctgctccagagaaaaacggatacggatacctttcggatcggataattctcggatagttcggatacggatacgaatacggatatttcctcccagatacgaatacggatatggtatcggggtttccgtcggatacggataa
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| Protein seq | MMQQNKRLNIGSTYVAFTYSNYFLSPYSNRIELIWKSRSYTFESTIPLLAVIDLQATFFLMRYLQRSPVLKLSRNNISGSIPNDIGNMNALESLDLSCNAFSGHITTNISSLTFLSSLHLSNNHLSLGMKTERIVSVCSREKRIRIPFGSDNSRIVRIRIRIRIFPPRYEYGYGIGVSVGYG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0632800 | SBH | 4.831923 | 5.202940 | 3.219376 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0632800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013200 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009260 | SBH | 0.069266 | 0.0 | 0.437422 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007140 | SBH | 0.270052 | 0.0 | 1.592091 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013010 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012740 | RBH | 0.0 | 0.0 | 1.586415 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0259300 | SBH | 0.010403 | 3.172238 | 0.013012 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012920 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0264500 | RBH | 0.0229445 | 0 | 0.1214305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013040 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007010 | SBH | 0.120750 | 0.0 | 0.221219 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010990 | SBH | 0.188396 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
