Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_12g0006770 OGI:12015190 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr12:5594574-5602913
Gene Symbol -
DNA seq

atggaaggcggcgattgccggcggccagcctccgacgctaacgaggaggcggcggttgccagtcgccctagctccaggaagaggaaggcgattgaggatttagaggaggaggaggaggaggaggaggaggtggatttgcagccggaggaggagtcgcgtccgccggcgccgccggcgaagggtttgtcgtgtctgccggcggcgtgccatgaggacggcatcatcccggcttttgtgatcccgggcagcaagcatcgcgacggctccatctacaggaaggatgcgcactactggcacggcctctaccacctcgacgacaccagcgaaagtaagcaaagcatcaaagcatctccgattccccccagttaatcccactactccccatctgctgtcaaacttttcatcaatttaacagttatctgttctgttctccactttttgattgataaatctgttctccattttaatcgtttgactttttatttagtcaaacttctttgggtttaacaagtttataaaaaattacctaacatctaaaacaccaaattaattttgtaaaatgtaacattgaataatttttgctaatatatttgttttgtgttggaaatatcgttatattctttcataaacttggtcaaattttaaaaaattgagtagaaaaagtcaaagccatttataatatgatgaaacgaaaacggagagagtagtatatactaatcactgtttgcttaatcgatccattccatcatcagctcgcctggaaccgatgacaccatcgtattcagagcaggactgcaggccatgcgtcaccgattgccagtggcacattggttgctccatgatgcagatcttctccctcgagctagccgaaatctcaaatttcgccaccggagctgctggtgccggtgctattcagctgtatgggttcatggctgcgcgggatcttttggacccgctgcgaaactacgtcttcaaccgcaccagggacgatccgttcaccatccgcgacgtctcctatccgtttatacagatgactggccctaagaggggcatcacgatgaactcccgcgtgatgatcgagtacgacctgaggatcaagaggggagagaatgaacaagatgatctggtgctcattgacggggctgccaccttcagcgagataacgaatttcataccgtacatttatcgcatccatggggattgcggcatggcggtggacataacgctagcacacttcatccttgcaattgaggcaacgttgcaagttcgaatatatgaactaaaggatggctgtggcagcctaaacttgactataacttgtcgtgttagtcatatgaccccacaaattaagctctttcaaggtcccattgataagctacgtgaccaaaataggtttgtggttgttgcaacactgaacactttgatgattacagagttcaagctaacacatcagcatggctcaatcagtcggagaattgagtccagggttgtaccacatggaagtatgtctcattgcgccaagtttgcggatttagccactataggtgtggagatcttttggtcaatcttacccacttcgctacaagaaggcttttgagccttctactttgttacattctatttattttcaggcaaaaaatcacctacctgtaaatagctaagagcaatgcaagttttttattaggatttgtgccatatatattgccatatgaaccagaaccaaccaaggcttcatgtgtatgtcaattgttgggcaaaccttgccatatgagcaaaaaTtttttttttctttcaattgattttgtggctgttgaatttgcacggagattgggatatcaaccacaacaagcacttttagcagtgattatgactccttccagggcaccagtaagttgatgatgtgatatacctaccttttttgttcttctctttgctttggatttcttgttctaacttcactcaatcagctaggaagaatatttatgcaaatttatattttcctgcctctaccctactccatattgctactagataatactacctccatattttaatgtatgacgccgttgactttttgtccaacgtttgaccattcgtcttattcaaaaaatttatgtaattatcatttattttattatgacttgattcatcatcaaatgttctttaagtatgacataaatatttttatatttacacaaaaaatttgaataaaatgaatggtcaaacgtttgtcgaaaagtcaacggcgtcatacattaaaatacggagggagtagtattttctatctttgtgctcgaatactggctggctcatgttctattgacacatggacctaaaagagtaatatttgacaagaggctggctaaatacctggtggctgaactatgcaacacatttagcatgtcacacaagtggtgtgtttcctaatacactcaagcctgtacaacaaattctgcttcaacaagtaactagaacaaaaattcacctgtcgatgactacatatgtttggtaaagaagcatctgaaatattccatattagtaggtgctaatacaacttggctgttcatttagtgtaatgaattctgtcagattggtgtgaaatatgccacagtttctgcttgtttggcttttctttttattttggagttgcagaattaggtgtaataatttgcaggtggtgaatgaaatgtgggcgtcttgggaactaccggagggctcaatttctgctggaggtgagtagtaaataaattaatcacaaattcatggttggtcctacacgaaatgatgggattggggaggggaacgttctatgcattttatggaaaattgtgacttctacagtgcccgtgcactgtttgatgttttgtctgaaagggagagttttatttggaacatattttatgttacaaaggagggaattatgactactagttcgtgatgcctgctgcgttgcaattgctgggcaatctcatgtcaaattgccacttggcagttcaccagttgacgagttgactactttggatggaattgcaaagagtatgagtggaaatgatccttttcttattattaattcaccttacagttcataggaagttagacagtcataggacttaatgatatataaaagtatcatagttttgtggtttatatggcacacaattcattttaaactttgttgctgaagcatggttatgcatatgaaatgtgtttttccttgtaagatgaaatgacagacaaataagtgtatatgcatgttctgttgtctttctataaagctgggaagatcttttgagcgacatgtggtaaaaaaacagtgcgtatgcatatcccgataaactaacagaaaatcattattttgggcatgcatttataagattcattttgggatgaatctctttgtagctgaatatgattaatttgggctccacataattaatctcctatcctaatcaccatgggaatgatcctttacataatcacatgattatgcaactttcctgctaatgtaggttgtccctgttgtggacggaaagggaaatgttgagttatcagtaacaggctttacgctattcctgataataaaaaggaatcctcaacaatgaagagattttggtaagcaactatctttgttgataactgataaggccgtataaacatatatttccgacaaattagtactggtgattcatcttaacattgctttgacagtacgtgcattttactgataacttcagtcaaaatgtctatgttcttacaaccaatctgcactgagcctcctgtaaccatagtgtatttcccatacagctgttttgaattgcaagctctatgacttctgtggtgaagagagagacctttctgagatggatgctgctcatctcataagagaatttgatattactgagcttgacaaggtaatcaaggaagcaaaactaaaccttgctcctggtccatatggcttccctgcacaattctatagacaattctggccacagctgagacagggtttgtttaagatgctgcaactgcttcatgatgaagagttagacttaaggaggttgaactttggtgccattaccctaatccctaaaattccctcccctacctcaatcaagcaattcagatccgtctatgggctaaatgattccctgaagtatcagcaaagttctgacaaacagactgtctgtagtggctccatccaccattgcctcaacacaaactgcttttattccaggcaggttcatacttgaaggatgtgttattctacatgaggtgatgcatgaactaaggagaaataaacaaagaggcgtgattctgaaactagattttgagaaggcttatgacagagtgagatggggattcgtttatggggtgtttgacagtgattctgaaactagattttgagaaggcttgacagagtgagatggggattcgttatggggtgttggacagaaagcattttcatgaaaaatggattcactgggtgaaaagctgtatagaaggtggaaaagtctgtatcaacataaatgggtagagatctaatttttttcagcacttacagaggcctcaggcaggaggatcctatctctccgctgctcttcaattatgtgagtgatgcgttgatccagctatttgatgcagccaaaagcgccaatatcctaacagggctggtcccacacctcttccctgggggattgactcacctacaaatgcagatgatacagtgatttttatcccataccttgctgtgaccaagttccttctttactgctttgaggacatgtctggtctaaagattaactatgataaaggcaaggtgtctgctgtggggttggagtaaaatgagttgaacagagttgctaacatgctcaactgccctgcaggttcttcccaatgaagtatctagttttacccatcagtccacaaaaggtagggatctctgagttaaaattcctaccacataagttagaaaagatgttctcatcAaaaaaaagttagaaaagaggttgggtacatggaagtcaaatttctcatctggggggagagatatccttatcaattcttgcctatcatccattccctcctatacaatgggtttctatctcttgccagaatgcattcatcgcaagatcaacacagttaggagcaggttttaatgggcaggtaatggctccaagaaaaaaaatacatgatgaaatgggaccatttatgcagtcctaaagagtttgggggcatggggttcacagaaacaatgaagtataacacgctctgttatccaaatggatttggaagctggaatcaggggacatgagcccctgtatagagctgttaagaagaaaatatctacagatcaaggggtttttccaatctgaaaaggagggagggtcacaattttgtagaagcttgcactcaattaaattctgggtccaaaacaactctgaatggaaattgggataaggaactcatatctctttctggtcagatgtttggactgggtcctgtcctttgaaaacaaatctgtaaccaacaagagattctggtgcctgatgctctggcctcttggcctgaggggatttctttcagaaggtcttttggcccggtggaggtggagtgggaaaaccttgggcaacgaatggctgaaatctcttactgatgaggaagacatgatgctttggccttttgagaagaacaaatgcttttctacaaagtcttgctacaaaatgctaaactttcatggggtgaaagatatgagaggactagatatttggcaagagccaatgccccagaaggtaaagcactttgtatggcttgcttggaaagataagattcaatccacctcctatctggttaagaagaattgggaaggatctgagagatgcattctttgttctgagatagaagatgcctggccagaaaatgaatgaaaagggtcttatgctgctcagctgctgggtgcagcgaacaaaatcttgtccacacctctaacccttgtttttcgtgtgattttcttcctttggcagtggagtaggtcgatgcgcaaaggagaagaagctcaagcggagtcgatggcggtgaagatcctagaagttaccctggtttaggctgagcagggttttggagccttgctgttctttgccagaacctaaactcgttttgtttttgtttctcttcctgagatccctgttagggttgcagcagttaagttggttggtggccggtgttttggccctgttccctgtctggcaaagctggtgttgtccccagagaatctgtggaaaactctgaaatttcagctttgtccgtttatgacatggcatttgaacattgtttccttgatcacagggagatccactggtcaattggttcgactcttgaaggccaggagatctcaaccacagcaatggtgaaactaggagcaacataatgcagccgcttgttatttccagccaaaattaatgctttagtcaatgttacgcacttagtggttccaaaagccaaaccatggtgtgtttttgctgctgtttgttgttcataaacaatgggcaatggaattcacctgacgatatgtgttgttgagctaatgattttgaacctcatagcaccaggaattcggaaagttgggagatataaccttttctttttgtaaaagaaattgattggagttttgataaaaaatgctcagtacttcaggagttcaggtggcgggttcacatagcagagcactgtatattctgtgtatatacagatatactgcagcattgcggcaagctcatcatctaatttatttactccatttctcagcccatttaatttgcatatttagagtgtctgcctttttatcaatatgaaattgaggggcagccacaatcatttgcaaaccaaataggagtaaaaattcagccgAaaaaaaaagtaaaacatgatgcgtcaatgaattaaattgataattgcctgtgcttggtacgagctatttttcttttgtctcattaatatgaggttttcctatattttggatttattcactaatttatgtttctctttatagtttctatggcattaatttaaactttcttctttttgctcacagaacacagtgacattacgtcttgaaggtactgaggaagagttcttggaaaatttcaacagatgccaggctcattttcaatattggcttctcatgaattcacccttccgcatacgttttggggaccaagttatatacactacccctttggatgggacattttactatgtcctgcaacatgaaggtcgctatgtcatactcgtagtattactgtattagccaggatggcatggctaattggtttttgtactacaaatggatttttccaaatggaatttgaagatttgatgggcctttatatggatagtgtccacagccaccttctcagattcaaaggaaatcaccataccatatcgcccaatgggacaggaaacactactgttaatttgcaattcattagaaaatgcttccacggattgtgtacatttgttccaagcaagtgtcaggacccaaaggacttgccaatgtggattggtctttttgttgtgctgattatggaatccaaatctcgtgaaatccataggcgtcattgccatgcaatccttgaggtgatcacaccggagttgggtagagactatgtcaatagttttatcaagaactggagttcaattagtgctcaagtgatggggtccttgacgaatttaacacaccatccacatgactgtggcattgatgtattggttacattggatgatctgattcaggtattttattaccttcatgttgatgcttggaatggaggattgtttgagcatgagagtctcgcaccccctccgagagagatgaaatggtctccagttgaccccggggtgggtgatgcaaacataagattacctcaggagccagcattacatggacgtggacacaagcgtacttctgctgcaactgcagagatgtgttcaaagcgagcacggggtctcttaggaggtgggcttggaggacccccaacagcaccagatttttttgttcgatatgtgcaagggggagatcaagtaagatctccgttttctctcatcattcgaacggcatgcatgcatcatggatggtgtattgaaattataggtgtttttctatcgctcattttgcagatgcagaaacaagaatgtgatcacttggtttctcatctagtctcatttggcatcactgtaaagaacgccatacgaacacctgcaccaacttccctagtaaagtttggccagcttgaagacattcgacgtgagaacaatgaacaagcgaacagggaagaggcagaggattaa

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CDS seq

atggaaggcggcgattgccggcggccagcctccgacgctaacgaggaggcggcggttgccagtcgccctagctccaggaagaggaaggcgattgaggatttagaggaggaggaggaggaggaggaggaggtggatttgcagccggaggaggagtcgcgtccgccggcgccgccggcgaagggtttgtcgtgtctgccggcggcgtgccatgaggacggcatcatcccggcttttgtgatcccgggcagcaagcatcgcgacggctccatctacaggaaggatgcgcactactggcacggcctctaccacctcgacgacaccagcgaaaagcaggactgcaggccatgcgtcaccgattgccagtggcacattggttgctccatgatgcagatcttctccctcgagctagccgaaatctcaaatttcgccaccggagctgctggtgccggtgctattcagctgtatgggttcatggctgcgcgggatcttttggacccgctgcgaaactacgtcttcaaccgcaccagggacgatccgttcaccatccgcgacgtctcctatccgtttatacagatgactggccctaagaggggcatcacgatgaactcccgcgtgatgatcgagtacgacctgaggatcaagaggggagagaatgaacaagatgatctggtgctcattgacggggctgccaccttcagcgagataacgaatttcataccgtacatttatcgcatccatggggattgcggcatggcggtggacataacgctagcacacttcatccttgcaattgaggcaacgttgcaagttcgaatatatgaactaaaggatggctgtggcagcctaaacttgactataacttgtcgtgttagtcatatgaccccacaaattaagctctttcaaggtcccattgataagctacgtgaccaaaatagattgggatatcaaccacaacaagcacttttagcagtgattatgactccttccagggcaccagtggtgaatgaaatgtgggcgtcttgggaactaccggagggctcaatttctgctggaggtcgatgcgcaaaggagaagaagctcaagcggagtcgatggcgggagatccactggtcaattggttcgactcttgaaggccaggagatctcaaccacagcaatgaacacagtgacattacgtcttgaaggtactgaggaagagttcttggaaaatttcaacagatgccaggctcattttcaatattggcttctcatgaattcacccttccgcatacgttttggggaccaagttatatacactacccctttggatgggacattttactatgtcctgcaacatgaaggtcgctatgtcatactcgtagtattactgtattag

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Protein seq

MEGGDCRRPASDANEEAAVASRPSSRKRKAIEDLEEEEEEEEEVDLQPEEESRPPAPPAKGLSCLPAACHEDGIIPAFVIPGSKHRDGSIYRKDAHYWHGLYHLDDTSEKQDCRPCVTDCQWHIGCSMMQIFSLELAEISNFATGAAGAGAIQLYGFMAARDLLDPLRNYVFNRTRDDPFTIRDVSYPFIQMTGPKRGITMNSRVMIEYDLRIKRGENEQDDLVLIDGAATFSEITNFIPYIYRIHGDCGMAVDITLAHFILAIEATLQVRIYELKDGCGSLNLTITCRVSHMTPQIKLFQGPIDKLRDQNRLGYQPQQALLAVIMTPSRAPVVNEMWASWELPEGSISAGGRCAKEKKLKRSRWREIHWSIGSTLEGQEISTTAMNTVTLRLEGTEEEFLENFNRCQAHFQYWLLMNSPFRIRFGDQVIYTTPLDGTFYYVLQHEGRYVILVVLLY

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0006770 OsNaBo_12g0006770.02 Chr12 5601879 5602913 + NAM
CDS seq

atggcatggctaattggtttttgtactacaaatggatttttccaaatggaatttgaagatttgatgggcctttatatggatagtgtccacagccaccttctcagattcaaaggaaatcaccataccatatcgcccaatgggacaggaaacactactgttaatttgcaattcattagaaaatgcttccacggattgtgtacatttgttccaagcaagtgtcaggacccaaaggacttgccaatgtggattggtctttttgttgtgctgattatggaatccaaatctcgtgaaatccataggcgtcattgccatgcaatccttgaggtgatcacaccggagttgggtagagactatgtcaatagttttatcaagaactggagttcaattagtgctcaagtgatggggtccttgacgaatttaacacaccatccacatgactgtggcattgatgtattggtattttattaccttcatgttgatgcttggaatggaggattgtttgagcatgagagtctcgcaccccctccgagagagatgaaatggtctccagttgaccccggggtgggtgatgcaaacataagattacctcaggagccagcattacatggacgtggacacaagcgtacttctgctgcaactgcagagatgtgttcaaagcgagcacggggtctcttaggaggtgggcttggaggacccccaacagcaccagatttttttgttcgatatgtgcaagggggagatcaaatgcagaaacaagaatgtgatcacttggtttctcatctagtctcatttggcatcactgtaaagaacgccatacgaacacctgcaccaacttccctagtaaagtttggccagcttgaagacattcgacgtgagaacaatgaacaagcgaacagggaagaggcagaggattaa

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Protein seq

MAWLIGFCTTNGFFQMEFEDLMGLYMDSVHSHLLRFKGNHHTISPNGTGNTTVNLQFIRKCFHGLCTFVPSKCQDPKDLPMWIGLFVVLIMESKSREIHRRHCHAILEVITPELGRDYVNSFIKNWSSISAQVMGSLTNLTHHPHDCGIDVLVFYYLHVDAWNGGLFEHESLAPPPREMKWSPVDPGVGDANIRLPQEPALHGRGHKRTSAATAEMCSKRARGLLGGGLGGPPTAPDFFVRYVQGGDQMQKQECDHLVSHLVSFGITVKNAIRTPAPTSLVKFGQLEDIRRENNEQANREEAED

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0006770 OsNaBo_12g0006770.01 Chr12 5594574 5601873 + NAM
CDS seq

atggaaggcggcgattgccggcggccagcctccgacgctaacgaggaggcggcggttgccagtcgccctagctccaggaagaggaaggcgattgaggatttagaggaggaggaggaggaggaggaggaggtggatttgcagccggaggaggagtcgcgtccgccggcgccgccggcgaagggtttgtcgtgtctgccggcggcgtgccatgaggacggcatcatcccggcttttgtgatcccgggcagcaagcatcgcgacggctccatctacaggaaggatgcgcactactggcacggcctctaccacctcgacgacaccagcgaaaagcaggactgcaggccatgcgtcaccgattgccagtggcacattggttgctccatgatgcagatcttctccctcgagctagccgaaatctcaaatttcgccaccggagctgctggtgccggtgctattcagctgtatgggttcatggctgcgcgggatcttttggacccgctgcgaaactacgtcttcaaccgcaccagggacgatccgttcaccatccgcgacgtctcctatccgtttatacagatgactggccctaagaggggcatcacgatgaactcccgcgtgatgatcgagtacgacctgaggatcaagaggggagagaatgaacaagatgatctggtgctcattgacggggctgccaccttcagcgagataacgaatttcataccgtacatttatcgcatccatggggattgcggcatggcggtggacataacgctagcacacttcatccttgcaattgaggcaacgttgcaagttcgaatatatgaactaaaggatggctgtggcagcctaaacttgactataacttgtcgtgttagtcatatgaccccacaaattaagctctttcaaggtcccattgataagctacgtgaccaaaatagattgggatatcaaccacaacaagcacttttagcagtgattatgactccttccagggcaccagtggtgaatgaaatgtgggcgtcttgggaactaccggagggctcaatttctgctggaggtcgatgcgcaaaggagaagaagctcaagcggagtcgatggcgggagatccactggtcaattggttcgactcttgaaggccaggagatctcaaccacagcaatgaacacagtgacattacgtcttgaaggtactgaggaagagttcttggaaaatttcaacagatgccaggctcattttcaatattggcttctcatgaattcacccttccgcatacgttttggggaccaagttatatacactacccctttggatgggacattttactatgtcctgcaacatgaaggtcgctatgtcatactcgtagtattactgtattag

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Protein seq

MEGGDCRRPASDANEEAAVASRPSSRKRKAIEDLEEEEEEEEEVDLQPEEESRPPAPPAKGLSCLPAACHEDGIIPAFVIPGSKHRDGSIYRKDAHYWHGLYHLDDTSEKQDCRPCVTDCQWHIGCSMMQIFSLELAEISNFATGAAGAGAIQLYGFMAARDLLDPLRNYVFNRTRDDPFTIRDVSYPFIQMTGPKRGITMNSRVMIEYDLRIKRGENEQDDLVLIDGAATFSEITNFIPYIYRIHGDCGMAVDITLAHFILAIEATLQVRIYELKDGCGSLNLTITCRVSHMTPQIKLFQGPIDKLRDQNRLGYQPQQALLAVIMTPSRAPVVNEMWASWELPEGSISAGGRCAKEKKLKRSRWREIHWSIGSTLEGQEISTTAMNTVTLRLEGTEEEFLENFNRCQAHFQYWLLMNSPFRIRFGDQVIYTTPLDGTFYYVLQHEGRYVILVVLLY

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.353683 3.240206 1.216210

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0211000 SBH 0.0 0.176073 0.933180
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g10820 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os12g0211000 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0006900 SBH 0.000000 0.0 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0006990 SBH 0.000000 0.0 0.158852
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0006980 SBH 0.000000 0.000000 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0006890 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0006730 RBH 0.000000 0.0 0.807825
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0086800 SBH 0.1814125 0.0386265 1.1111155
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0006710 RBH 0.000000 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0092700 SBH 0.165628 0.133933 7.322271
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0006600 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0006880 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0006730 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0006760 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0006650 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G006770 RBH 0.000000 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_12g0006750 RBH 0.0 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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