Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006600 | OGI:12015190 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5602502-5608560 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaaggcggcgattgccggcggccagcctccgacgctaacgaggaggccgcggttgccagtcgccctagctctaggaagaggaaggcgattgaggatttagaggaggaggaggaggtggatttgcagccggaggaggagtcgcgtccgccggcgccgccggcgaagggtttgtcgtgtctgccggcggcgtgccatgaggacggcatcatcccggcttttgtgatcccgggcagcaagcatcgcgacggctccatctacaggaaggatgcgcactactggcacggcctctaccacctcgacgacaccagcgaaagtaagcaaagcatcaaagcatctccgattCCccccagttaatcccactactccccatctgctgtcaaacttttcatcaatttaacagttatctgttctccattttaatcgtttgactttttatttagtcaaacttctttgggtttaacaagtttataaaaaaaattacctaacatctaaaacaccaaattaattttgtaaaatgtaacattgaataatttttgctaatatatttgttttgtgttggaaatatcgttatattctttcataaacttggtcaaattttaaaaaattgagtagAaaaaagtcaaagccatttataatacgatgaaacggaaacggagagagtagtatatactaatcactgtttgcttaatcgatccattccatcatcagctcgcctggaaccgatgacaccatcgtattcagagcaggactgcaggccatgcgtcaccgattgccagtggcacattggttgctccatgatgcagatcttctccctcgagctagccgaaatctcaaatttcgccaccggagctgctggtgccggtgctattcagctgtatgggttcatggctgcgcgggatcttttggacccgctgcgaaactacgtcttcaaccgcaccagggacgatccgttcaccatccgcgacgtctcctatccgtttatacagatgactggccctaagaggggcatcacgatgaactcccgcgtgatgatcgagtacgacctgaggatcaagaggggagagaatgaacaagatgatctggtgctcatcgacggggctgccaccttcagcgagataacgaatttcataccatacatttatcgcatccatggggattgcggcatggcggtggacataacgctagcacacttcatccttgcaattgaggcaacgttgcaagttcgaatatatgaactaaaggatggctgtggcagcctaaacttgactataacttgtcgtgttagtcatatgaccccacaaattaagctctttcaaggtcccattgataagctaagtgaccaaaataggtttgtggttgttgcaacactgaacactttgatgattacagagttcaagctaacacaacagcatggctcaatcagtcggagatttgagtccagggttgtaccacatggaagtatgtctcattgcgccaagtttgcggatttagccactataggtgtggagatcttttggtcaatcttacccacttcgctacaagaaggcttttgagccttctactttgttacattctatttattttcaggcaaaaaatcacctacctgtaaatagctaagagcaatgcaagttttttattaggatttgtgccatatatattgccatatgaaccagaaccaaccaaggcttcatgtgtatgtcaattgttgggcaaaccttgccatatgagcaaaatatatttttttttctttcaattgattttgtggctgttgaatttgcacggagattgggatatcaaccacaacaagcacttttagcagtgattacgactccttccagggcaccagtaagttgatgatgtgatatacctaccTtttttgttcttctctttgctttggatttcttgttctaacttcactcaatcagctaggaagaatatttatgcaaatttatattttcctgcctctaccctactccatattgctactagataatactacctccatattttaatgtatgacgccgttgactttgtccaacgtttgaccattcgtcttattcaaaaaatttatgtaattatcatttattttattatgacttgattcgtcatcaaatgttctttaagtatgacataaatatttttatatttACacaaaaaatttgaataaaatgaatggtcaaacgtttgtcgaaaagtcaacggcgtcatacattaaaatacggagggagtagtattttctatctttgtgctcgaatactggctggctcatgttctattgacacatggacctaaaagagtaatatttgacaagaggctggctaaatacctggtggctgaactatgcaacacatttagcatgtcacacaagtggtgtgtttcctaatacactcaagcctgtacaacaaattctgcttcaacaagtaactagaacAaaaattcacctgtcgatgactacatatgtttggtaaagaagcatctgaaatattccatattagtaggtgctaatacaacttggctgttcatttagtgtaatgaattctggcagattggtgtgaaatatgccacagtttctgcttgtttggcttttctttttattttggagttgcagaattaggtgtaataatttgcaggtggtgaatgaaatgtgggcgtcttgggaactaccggagggctcaatttctgctggaggtgagtagtaaataaattaatcacaaattcatggttggtcctacacgaaatgatgggattggggaggggaacgttctatgcattttatggaaaattgtgacaacttctacagtgcctgtgcactgtttgatgttttgtctgaaagggagagttttatttggaacatattttatgttacaaaggagggaattatgactactagttcgtgatgcctgctgcgttgcaattgctgggcaatctcatgtcaaattgccacttggcagttcaccagttgacgagttgactactttggatggaattgcaaagagtatgagtggaaatgatccttttcttattattaattcaccttacagttcataggaagttagacagtcataggacttaatgatatataaaagtatcatagttttgtggtttatatggcacacaattcattttaaactttgttgctgaagcatggttatgcatatgaaatgtgtttttccttgtaagatgaaatgacagacaaataagtgtatatgcatgttctgttgtctttctataaagctgggaagatcttttgagcgacatgtggtaaaaaaacagtgcgtatgcatatcccgataaactaacagaaaatcattattttgggcatgcatttataagattcattttgggatgaatctctttgtagctgaatatgattaatttgggctccacataattaatctcctatcctaatcaccatgggaatgatcctttacataatcacatgattatgcaactttcctgctaatgtaggttgtCcctgttgtggacggaaagggaaatgttgagttatcagtaacaggctttacgctattcctgataataaaaaggaatcctcaacaatgaagagattttggtaagcaactatctttgttgataactgataaagccgTAtaaacatttatttccgacaaattagtactggtgattcatcttaacattgctttgacagtacgtgcattttactgataacttcagtcaaaatgtctatgttcttacaaccaatctgcactgagcctcctgtaaccatagtgtatttcccatacagctgttttgaattgcaagctctatgacttctgtggtgaagagagagacctttctgagatggatgctgctcatctgataagagaatttgatattactgagcttgacaaggtaatcaaggaagcaaaactaaaccttgctcctggtccatatggcttccctgcacaattctatagacaattctggccacagctgagacagggTTtgtttaagatgctgcaactgcttcatgatgaagagttagacttaaggaggttgaactttggtgccattaccctaatccctaaaattccctcccctacctcaatcaagcaattcagatccgtctatgggctaaattgttCcctgaagtatcagcaaagttctgacaaacagactgtctgtagtggctccatccaccatttcctcaacacaaactgcttttattccaggcaggttcatacttgaaggatgtgttattctacatgaggtgatgcatgaactaaggagaaataaacaaagaggcgtgattctgaaactagattttgagaaggcttatgacagagtgagatggggattcgtttatggggtgtttgacagtgattctgacACTagattttgagaaggcttgacagagtgagatggggattcgttatggggtgttggacagaaagcattttcatgaaaaatggattcactgggtgaaaagctgtatagaaggtggaaaagtctgtatcaacataaatgggtagagatctaatttttttcagcacttacagaggcctcaggcaggaggatcctatctctccgctgctcttcaattatgtgagtgatgcgttgatccagctatttgatgcagccaaaagcgccaATatcctaacagggctggtcccacacctcttccctgggggattgactcacctacaaatgcagatgatacagtgatttttatcccataccttgctgtgaccaagttccttctttactgctttgaggacatgtctggtctaaagattaactatgataaaggcaaggtgtttgctgtggggttggagtAaaatgagttgaacagagttgctaacatgctcaactgccctgcaggttcttcccaatgaagtatctagttttacccatcagtccacaaaaggtagggatctctgagttaaaattcctaccacataagttagaaaagatgttctcgtcaaaaaaaagttagaaaagaggttgggtgcatggaagtcaaatttctcatctggggggagagatatccttatcaattcttgcctatcatccattccctcctatacaatgggtttctatctcttgccagaatacattcatcgcaagatcaacacagttaggagcaggttttaatgggcaggtaatggctccaagAaaaaaaatacatgatgAaatgggaccatttatgcagtcctaaagagtttgggggcatggggttcacagaaacaatgaagtataacacgctctgttatccaaatggatttggaagctggaatcaggggacatgagcccctgtatagagctgttaagaagaaaatatctacagatcaaggggtttttccaatctgaaaaggagggaggatcacaattttgtagaagcttgcactcaattaaattctgggtccaaaaCaactctgaatggaaattgggataaggaactcatatctctttctggtcagatgtttggactgggtcctgtcctttgaaaacaaatctgtaaccaacaagagattctggtgcctgatgctctggcctcttggcctgaggggatttctttcagaaggtcttttggcccggtggaggtggaTGGGAAAACCTTGGGCAACGAATGGCTGAAATCTCTTACTGATGAGGAAGACATGATGCTTTGGCCTTTTGAGAAGAACAAATGCTTTTCTACAAAGTCTTGCTACAAAATGCTAAACTTTCATGGGGTGAAAGATATGAGAGGACTAGATATTTGGCAAGAGCCAATGCCCCAGAAGGTAAAGCACTTTGTATGGCTTGCTTGGAAAGATAAGATTCAATCCACCTCCTATCTGGTTAAGAAGAATTGGGAAGGATCTGAGAGATGCATTCTTTGTTCTGAGATAGAAGATGCCTGGCCAGAAAATGAATGAAAAGGGTCTTATGCTGCTCAGCTGCTGGGTGCAGCGAACAAAATCTTGTCCACACCTCTAACCCTTGTTTTTCGTGTGATTTTCTTCCTTTGGCAGTGGAGTAGGTCGATGCGCAAAGGAGAAGAAGCTCAAGCGGAGTCGATGGCGGTGAAGATCCTAGAAGTTACCCTGGTTTAG
More
|
||||||||||
| CDS seq | atggaaggcggcgattgccggcggccagcctccgacgctaacgaggaggccgcggttgccagtcgccctagctctaggaagaggaaggcgattgaggatttagaggaggaggaggaggtggatttgcagccggaggaggagtcgcgtccgccggcgccgccggcgaagggtttgtcgtgtctgccggcggcgtgccatgaggacggcatcatcccggcttttgtgatcccgggcagcaagcatcgcgacggctccatctacaggaaggatgcgcactactggcacggcctctaccacctcgacgacaccagcgaaaagcaggactgcaggccatgcgtcaccgattgccagtggcacattggttgctccatgatgcagatcttctccctcgagctagccgaaatctcaaatttcgccaccggagctgctggtgccggtgctattcagctgtatgggttcatggctgcgcgggatcttttggacccgctgcgaaactacgtcttcaaccgcaccagggacgatccgttcaccatccgcgacgtctcctatccgtttatacagatgactggccctaagaggggcatcacgatgaactcccgcgtgatgatcgagtacgacctgaggatcaagaggggagagaatgaacaagatgatctggtgctcatcgacggggctgccaccttcagcgagataacgaatttcataccatacatttatcgcatccatggggattgcggcatggcggtggacataacgctagcacacttcatccttgcaattgaggcaacgttgcaagttcgaatatatgaactaaaggatggctgtggcagcctaaacttgactataacttgtcgtgttagtcatatgaccccacaaattaagctctttcaaggtcccattgataagctaagtgaccaaaatagattgggatatcaaccacaacaagcacttttagcagtgattacgactccttccagggcaccagtggtgaatgaaatgtgggcgtcttgggaactaccggagggctcaatttctgctggagCGAACAAAATCTTGTCCACACCTCTAACCCTTGTTTTTCGTGTGATTTTCTTCCTTTGGCAGTGGAGTAGGTCGATGCGCAAAGGAGAAGAAGCTCAAGCGGAGTCGATGGCGGTGAAGATCCTAGAAGTTACCCTGGTTTAG
More
|
||||||||||
| Protein seq | MEGGDCRRPASDANEEAAVASRPSSRKRKAIEDLEEEEEVDLQPEEESRPPAPPAKGLSCLPAACHEDGIIPAFVIPGSKHRDGSIYRKDAHYWHGLYHLDDTSEKQDCRPCVTDCQWHIGCSMMQIFSLELAEISNFATGAAGAGAIQLYGFMAARDLLDPLRNYVFNRTRDDPFTIRDVSYPFIQMTGPKRGITMNSRVMIEYDLRIKRGENEQDDLVLIDGAATFSEITNFIPYIYRIHGDCGMAVDITLAHFILAIEATLQVRIYELKDGCGSLNLTITCRVSHMTPQIKLFQGPIDKLSDQNRLGYQPQQALLAVITTPSRAPVVNEMWASWELPEGSISAGANKILSTPLTLVFRVIFFLWQWSRSMRKGEEAQAESMAVKILEVTLV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006600 | OsLima_12g0006600.01 | Chr12 | 5602502 | 5608560 | + | NAM | ||
| CDS seq | atggaaggcggcgattgccggcggccagcctccgacgctaacgaggaggccgcggttgccagtcgccctagctctaggaagaggaaggcgattgaggatttagaggaggaggaggaggtggatttgcagccggaggaggagtcgcgtccgccggcgccgccggcgaagggtttgtcgtgtctgccggcggcgtgccatgaggacggcatcatcccggcttttgtgatcccgggcagcaagcatcgcgacggctccatctacaggaaggatgcgcactactggcacggcctctaccacctcgacgacaccagcgaaaagcaggactgcaggccatgcgtcaccgattgccagtggcacattggttgctccatgatgcagatcttctccctcgagctagccgaaatctcaaatttcgccaccggagctgctggtgccggtgctattcagctgtatgggttcatggctgcgcgggatcttttggacccgctgcgaaactacgtcttcaaccgcaccagggacgatccgttcaccatccgcgacgtctcctatccgtttatacagatgactggccctaagaggggcatcacgatgaactcccgcgtgatgatcgagtacgacctgaggatcaagaggggagagaatgaacaagatgatctggtgctcatcgacggggctgccaccttcagcgagataacgaatttcataccatacatttatcgcatccatggggattgcggcatggcggtggacataacgctagcacacttcatccttgcaattgaggcaacgttgcaagttcgaatatatgaactaaaggatggctgtggcagcctaaacttgactataacttgtcgtgttagtcatatgaccccacaaattaagctctttcaaggtcccattgataagctaagtgaccaaaatagattgggatatcaaccacaacaagcacttttagcagtgattacgactccttccagggcaccagtggtgaatgaaatgtgggcgtcttgggaactaccggagggctcaatttctgctggagCGAACAAAATCTTGTCCACACCTCTAACCCTTGTTTTTCGTGTGATTTTCTTCCTTTGGCAGTGGAGTAGGTCGATGCGCAAAGGAGAAGAAGCTCAAGCGGAGTCGATGGCGGTGAAGATCCTAGAAGTTACCCTGGTTTAG
More
|
|||||||
| Protein seq | MEGGDCRRPASDANEEAAVASRPSSRKRKAIEDLEEEEEVDLQPEEESRPPAPPAKGLSCLPAACHEDGIIPAFVIPGSKHRDGSIYRKDAHYWHGLYHLDDTSEKQDCRPCVTDCQWHIGCSMMQIFSLELAEISNFATGAAGAGAIQLYGFMAARDLLDPLRNYVFNRTRDDPFTIRDVSYPFIQMTGPKRGITMNSRVMIEYDLRIKRGENEQDDLVLIDGAATFSEITNFIPYIYRIHGDCGMAVDITLAHFILAIEATLQVRIYELKDGCGSLNLTITCRVSHMTPQIKLFQGPIDKLSDQNRLGYQPQQALLAVITTPSRAPVVNEMWASWELPEGSISAGANKILSTPLTLVFRVIFFLWQWSRSMRKGEEAQAESMAVKILEVTLV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0211000 | SBH | 0.0 | 0.176073 | 0.933180 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10820 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0211000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006900 | SBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006990 | SBH | 0.000000 | 0.0 | 0.158852 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006980 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006890 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006730 | RBH | 0.000000 | 0.0 | 0.807825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0087400 | RBH | 0.045387 | 0.0445525 | 0.3020405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006710 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0093400 | RBH | 0.0534775 | 0.088413 | 2.5333175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006590 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006760 | SBH | 0.000000 | 0.0 | 0.302429 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006770 | RBH | 0.353683 | 3.240206 | 1.216210 |
