Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0006560 | OGI:12014670 | 7/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:5334308-5336031 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttactccatgcgaagtcctcctgtgtgatgcatgacaatggcactgttatgaattgcttgccaacaatgattcccaacaatttgatatgctgcaaacagtgacaacctcgtttgatcaactgcagagtccacccatgttcatgattatgtccatttattggcatgccaatttcatcagtcaagcatatgcattgcctagtagatcctaatgtatttaccacctctgcagaaactaactcaaaagtatatttctcatcatgaattgaattagcatcttcttccatttctttcacccttttgcagcctttttcatcagcaatcacatatagcaaatctctttcagcattcaaaccaatgtaatttggttccaaacatgactcagattctgacatcaccatgcaaattattctcatattccatttctccactctagtttggtagtagttgagcaacatcccccggagatcaacagatgataaccaaacagataatgatttgggatcacaaataactagattgctttccttgctagcaagtgttgtcaaactgacctggaaagtcagatcccaaaacttctgcatttttttctcaaagcaagtgcaagtttcagtaatcatcattttcttttgctcattccaaggaattatacttgcagcaaaatcagtagtgcaacatttcccttctctagcttccagcaaacaaactaatggcagccaaggtggcatgccaaatagtctcagcttgtcaacatgttttcctttgatggaaatgttctcagaaccaaattgcccagtactgctcagctccacaaccatcactcttgcaagaagtaagtgactccaacttaagtagcagttgtcctttctttccatttcaacaaaagatagccccaaaagtaaatattcaggttcaccagcaacatagatgccttccttgctagtggctgctataaggttgatcaaaaaggacaactcacttttcactccaacattgaatttcagcttattgctctacaaaatatacctctaatgaaaataatgttgtgggaaccaatcatccatccatattaatattttgtgaaggtggacctgtccatcacctggatcccacactagtggcccaaacatggcatgtataatgttcagcgagtttaacaatgaaaattgcttgcccacaaagagttgaaaccatttcgcttcggttggagggggccaaggtggcaatatatgtactttacaacagctgcagttgaatgccagccatgacattaactgtgactcccatatgatcaactcttgatcccttgatgttatgggtggccatggatcaacctcaaagtgttgcaacagcagttgccatggaactaacaaatgtcctccaactgattccactaacactggggtgcttaagaaggacaaataagacacaacttgagagttgttagacctagaacatttcgccgaatacctggtgggcatcaatgtgtactgcttgatgtcggcgatcatccttggtgagaaggcgctcaatgatgtaatggatgctggaacggtctcaagtacaaccgtcttggtcaggaacgtgatgtcggctttgttggcgtcccacttgacatcgaagcccaacatcgaacacttggcgtgcgtctccttggaatagtcaatggtgggaattttggtggtgctggttgcaccatcatcagctaccaacttcatggaggccat
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| CDS seq | atggcctccatgaagttggtagctgatgatggtgcaaccagcaccaccaaaattcccaccattgactattccaaggagacgcacgccaagtgttcgatgttgggcttcgatgtcaagtgggacgccaacaaagccgacatcacgttcctgaccaagacggttgtacttgagaccgttccagcatccattacatcattgagcgccttctcaccaaggatgatcgccgacatcaagcagtacacattgatgcccaccagaaaggacaactgctacttaagttggagtcacttacttcttgcaagagtgatggttgtggagctgagcagtactgggcaatttggttctgagaacatttccatcaaaggaaaacatgttgacaagctgagactatttggcatgccaccttggctgccattagtttgtttgctggaagctagagaagggaaatgttgcactactgattttgctgcaagtataattccttggaatgagcaaaagaaaatgatgattactgaaacttgcacttgctttgagaaaaaaatgcagaagttttgggatctgactttccaggtcagtttgacaacacttgctagcaaggaaagcaatctagttatttgtgatcccaaatcattatctgtttggttatcatctgttgatctccgggggatgttgctcaactactaccaaactagagtggagaaatggaatatgagaataatttgcatggtgatgtcagaatctgagtcatgtttggaaccaaattacattggtttgaatgctgaaagagatttgctatatgtgattgctgatgaaaaaggctgcaaaagggtgaaagaaatggaagaagatgctaattcaattcatgatgagaaatatacttttgagttagtttctgcagaggtggtaaatacattaggatctactaggcaatgcatatgcttgactgatgaaattggcatgccaataaatggacataatcatgaacatgggtggactctgcagttgatcaaacgaggaggacttcgcatggagtaa
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| Protein seq | MASMKLVADDGATSTTKIPTIDYSKETHAKCSMLGFDVKWDANKADITFLTKTVVLETVPASITSLSAFSPRMIADIKQYTLMPTRKDNCYLSWSHLLLARVMVVELSSTGQFGSENISIKGKHVDKLRLFGMPPWLPLVCLLEAREGKCCTTDFAASIIPWNEQKKMMITETCTCFEKKMQKFWDLTFQVSLTTLASKESNLVICDPKSLSVWLSSVDLRGMLLNYYQTRVEKWNMRIICMVMSESESCLEPNYIGLNAERDLLYVIADEKGCKRVKEMEEDANSIHDEKYTFELVSAEVVNTLGSTRQCICLTDEIGMPINGHNHEHGWTLQLIKRGGLRME |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0006560 | OsNaBo_12g0006560.01 | Chr12 | 5334308 | 5336031 | - | NAM | ||
| CDS seq | atggcctccatgaagttggtagctgatgatggtgcaaccagcaccaccaaaattcccaccattgactattccaaggagacgcacgccaagtgttcgatgttgggcttcgatgtcaagtgggacgccaacaaagccgacatcacgttcctgaccaagacggttgtacttgagaccgttccagcatccattacatcattgagcgccttctcaccaaggatgatcgccgacatcaagcagtacacattgatgcccaccagaaaggacaactgctacttaagttggagtcacttacttcttgcaagagtgatggttgtggagctgagcagtactgggcaatttggttctgagaacatttccatcaaaggaaaacatgttgacaagctgagactatttggcatgccaccttggctgccattagtttgtttgctggaagctagagaagggaaatgttgcactactgattttgctgcaagtataattccttggaatgagcaaaagaaaatgatgattactgaaacttgcacttgctttgagaaaaaaatgcagaagttttgggatctgactttccaggtcagtttgacaacacttgctagcaaggaaagcaatctagttatttgtgatcccaaatcattatctgtttggttatcatctgttgatctccgggggatgttgctcaactactaccaaactagagtggagaaatggaatatgagaataatttgcatggtgatgtcagaatctgagtcatgtttggaaccaaattacattggtttgaatgctgaaagagatttgctatatgtgattgctgatgaaaaaggctgcaaaagggtgaaagaaatggaagaagatgctaattcaattcatgatgagaaatatacttttgagttagtttctgcagaggtggtaaatacattaggatctactaggcaatgcatatgcttgactgatgaaattggcatgccaataaatggacataatcatgaacatgggtggactctgcagttgatcaaacgaggaggacttcgcatggagtaa
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| Protein seq | MASMKLVADDGATSTTKIPTIDYSKETHAKCSMLGFDVKWDANKADITFLTKTVVLETVPASITSLSAFSPRMIADIKQYTLMPTRKDNCYLSWSHLLLARVMVVELSSTGQFGSENISIKGKHVDKLRLFGMPPWLPLVCLLEAREGKCCTTDFAASIIPWNEQKKMMITETCTCFEKKMQKFWDLTFQVSLTTLASKESNLVICDPKSLSVWLSSVDLRGMLLNYYQTRVEKWNMRIICMVMSESESCLEPNYIGLNAERDLLYVIADEKGCKRVKEMEEDANSIHDEKYTFELVSAEVVNTLGSTRQCICLTDEIGMPINGHNHEHGWTLQLIKRGGLRME
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10480 | RBH | 0.000000 | 0.0 | 0.097330 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006600 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006680 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006680 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006580 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018860 | SBH | 4.131951 | 7.532061 | 6.898933 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018730 | SBH | 0.245922 | 0.458318 | 0.901623 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018970 | SBH | 0.077352 | 0.082969 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019200 | SBH | 0.352914 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019120 | SBH | 2.278904 | 11.002890 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001700 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006440 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
