Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0006520 | OGI:12014490 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:5307868-5312356 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcatcttctgtactagtgtttgctggaaagtcagttgcatcccccactatctccttctttgccaacaaggccttcaactacctgcagaatcagtaccgtaaggctcaagggattgaggacatgaagatcagactacagaggaacatccccaagatccaatcagtcattgatatcgttgatactgattacatcaaggagagtagcgaagaccttgatacacggctgtggcagctcagggatgcagtcgaggaggctgaggatgccatcgatgagcttgagtattacgatctcaaagagaaggaaaaagatcaaaaggttagtcatcagggctcttcttttactaagatgaagcgcaaatgtttacagtctattaagcatatcagtgttttcggtaagacatctgattgtcctctcaagagattaaagaatgccatggaaggtttagatgaggctgttaaaggcgttgacaattttctcgcacttgtagaccaaatcaaaagaacgactttagacaattcacaacgagttgatgagatgaacaggtactgagagacaggaaggaagttaactgttgacagggtgtcgagagagaaaacgagaaggaacatctagttggatggttgactaatacatcaaatagagataaagaagttgtcatgagcaataatcatgtacccattatgtcaataattggtcatggtggcattgggaaaataattttggctcagcttatcacccaagactaccgaatcaaggaacattttcaaaccttgatctgggtttctgcatctacaaacttctatgcagcaacattgataagtaaaataatccaatctgttacattatcaaaacctagtaacctacgatgcactgcaagagcaTttggaaaggatacttcagaccattaaatatcttctcattttagatgatgtctccctcccgcccccgattgaagtcggcatttaccgctcctgtccagagcaaccaccacctggtgcgccatgtcaattcgccgcggcggagtactccctacgacgctacgaaattcacttataattcaataccttctgaaagtttgctttggcctcaaatgtgggcaaggagtataatttatttctAaaaatttaaattgcgtcaaattcaggatcttaatttaatagcatcAaaaagcttcagctggtaaaaacacgagaattaattacttatacctcaatgttgttaacactatatattaccattcctacaaccaattacaaaacaatgtcttacaaaaccagagatgattgtcattgtatcatgtctttaggacgactatggcagggtggatcatgctgtagaagaataagaaagggaaaaagattattgcaacggatgagacagtggatggggaacaattgtattgattcctattggtgtatatagagaacatggtgacgggtagatcaagccaaatctttaaagatatcacatgcatcatattgaatcacaattgattatgatctatctctagctataatatgtttatgtacacttgtagagtaccctgaacagattgtaTttttaaaaaaaataatacacctacctaggacatttaaaaggtatttagctggtttcacccaagtcaacttcagtccattttacagtgggaaggtcaactgcttaaatttgttcatggaccacttatctgctgattgggtttaacagttctgggcaaatagtttttgttcacccctactgaagatcgtaaagttttcggaccagttatacatcacccagcatttcatcatttccatctctcttgtgccacaaacatatcgtaggactaacatggcattttctgtactagtgtttgctggaaagacagtcgcaacccccgctatctccctccttgtcaacaaggtccatagctatggacaaagttttcacacctaggtgctatgacacccatttttttttgcatgcaactcaaatagttatagaaaaaattaaaaaaaaatagtaccataaattaggatggtatgagcctacagacaaacatgcagtactaaatttgatctacaactagagaaagaaaaataataatagaatcagacagtgaatacctgtatagtgcagataaaagttgttatttttgtttcttcatgtgtagatagaatttagatttgcatgtttgtatagtgtcttatattatcataatctatcttttaaaattttataaatattttatataactatttaaaccgcatgcgtacacctaggtgtacaaaatactttccccttcagctacctgcagaatcagtaccgcatggctcaagggattggggacaggaagatcagactatagaggaacatcccaatgaacaaatcagtcattcatattgttgatcctgattacatcaaggagagtagcgaagaccttgatacatggatgtgacagctcagggacgccgtcgaggaggctgaggatgccatcgatgagctcaagtattacgagctcaaagagaaggagaaagatcaaaaggttagtcaccagggctcttctttcactaagatgaagagcaaatgtttccagtctgttaagcatatcagtgTtttcagtaagacatttgattgccctcttaagaggttaaaggatgcctgtggaaggtttaggtgaggctgctaaaggcgttgacaattttctcgcacttgtagatcaaatcacaagaaccacattctttttttgaaaaccaagccagcacagcaggtgttatattaagtaGgggagaaactatttacaagatcaccaacggtgaaggagagaaagAaaagaaaaagaaaaagaaaagaaaaagaaaaagaagaggaaaaagaagagggagaaaaccgctaatcaatcaaaaagtcttaggccgataatctcgcaatgtttgttgctccacatattctccatagcttgacttcatcatgaatcttgtatagtagctgcagcagggttttttcttgatttcgaaatactcgtatgttctgctcgcaccatatttcccatgctaccagcatgtggattgatttttttgctttggctttgtctttcccaccttgagatgtacaagaaccactttagacaattcacgagttgatgaggtcaacatataccgagagcaaggaaggacgttaactgttgatagggtctttgggagagaaaacgagaaggaacatctagttggatggttgactaatacatcaaatagagataataaagttgtcatgagcaataataatgtacccattatgtcaataattggtcatggcggcattgggaaaactattttggctcagcttatcccccaacaatccagaatcaagaaacattttcaaaccgtgatttgggtttctgcatctacaaacttttgcgcagcaacattgataagtaaaataatccaatctgttacattatcaaaacctaatgttgagacctacgatgcactgcaagagcatttggcggggacacttcagaccattaaatatcttctcattttatatgatgtctgggaagataaggaaatatctgtgtgggaaaagttatttgcatcactgagaacaggagtgcgtggaaggaagatttttttgacaacccgaatgcaatcagtggcagatttagcatcagctgcaatgggatgtcgaagagagagcttttaattgtgtggtcttgaagaaaatgaaaatttgggactttttaatatcatgccttcagttgtctggatcccaaagaatttgaagacatacgagaagctggagaaaaaataacaaagaaattaagagggtgtcccttggtaacaaaggttattgctggtcatctacgggagcatatgacagttcaattctgggatagatttttgcatgaacatatctggggtaTtttgatggaagtatggaaaacattatgaaagttcttaaactaagttacttccacttgccacctggcgcacaagtttgcttccaatattgtagcatattcccacaaaatcatgaattcaaaaaaggagaattggtgcagatgtggatagcttcaggattgataccgcagaccacaggcgaagccaaaacgacacaagatgtaggagaagagtacttgattcagctgactagaaagtcgttcgttgacctcaagttgagaaactttcattttggaaggaacgaaggccacgaatattatgtgatgcacgacttaatatatgatttggcaacatgggtttcttccagtgaatgtgcaagaattgcttatgttaatggctccgaaagagtaaaaagagcactatgtcacctctctgttgttggcattaatagcttcccagttgaggccattaaaagtttctgccagttcaaatatctgcgcaccattatctttgaagattcccatgacatccaggacgatgctgtacgtgcagtggaggaagttctagaaagcttaaaagccctgcgtgttgtgcaatgcaaagttcagtag
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| CDS seq | atggcatcttctgtactagtgtttgctggaaagtcagttgcatcccccactatctccttctttgccaacaaggccttcaactacctgcagaatcagtaccgtaaggctcaagggattgaggacatgaagatcagactacagaggaacatccccaagatccaatcagtcattgatatcgttgatactgattacatcaaggagagtagcgaagaccttgatacacggctgtggcagctcagggatgcagtcgaggaggctgaggatgccatcgatgagcttgagtattacgatctcaaagagaaggaaaaagatcaaaagtctattaagcatatcagtgttttcggtaagacatctgattgtcctctcaagagattaaagaatgccatggaaggtttagatgaggctgttaaaggcgttgacaattttctcgcacttgtagaccaaatcaaaagaacgactttagacaattcacaacgagttgatgagatgaacaggacatttaaaaggtatttagctggtttcacccaagtcaacttcagtccattttacagtgggaagctcagggacgccgtcgaggaggctgaggatgccatcgatgagctcaagtattacgagctcaaagagaaggagaaagatcaaaaggttagtcaccagggctcttctttcactaagatgaagagcaaatgtttccagtctgttaagcatatcagtgTtttcagtaagacatttgattgccctcttaagaggttaaaggatgcctgtggaagttgtctggatcccaaagaatttgaagacatacgagaagctggagaaaaaataacaaagaaattaagagggtgtcccttggtaacaaagatgtggatagcttcaggattgataccgcagaccacaggcgaagccaaaacgacacaagatgtaggagaagagtacttgattcagctgactagaaagtcgttcgttgacctcaagttgagaaactttcattttggaaggaacgaaggccacgaatattatgtgatgcacgacttaatatatgatttggcaacatgggtttcttccagtgaatgtgcaagaattgcttatgttaatggctccgaaagagtaaaaagagcactatgtcacctctctgttgttggcattaatagcttcccagttgaggccattaaaagtttctgccagttcaaatatctgcgcaccattatctttgaagattcccatgacatccaggacgatgctgtacgtgcagtggaggaagttctagaaagcttaaaagccctgcgtgttgtgcaatgcaaagttcagtag
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| Protein seq | MASSVLVFAGKSVASPTISFFANKAFNYLQNQYRKAQGIEDMKIRLQRNIPKIQSVIDIVDTDYIKESSEDLDTRLWQLRDAVEEAEDAIDELEYYDLKEKEKDQKSIKHISVFGKTSDCPLKRLKNAMEGLDEAVKGVDNFLALVDQIKRTTLDNSQRVDEMNRTFKRYLAGFTQVNFSPFYSGKLRDAVEEAEDAIDELKYYELKEKEKDQKVSHQGSSFTKMKSKCFQSVKHISVFSKTFDCPLKRLKDACGSCLDPKEFEDIREAGEKITKKLRGCPLVTKMWIASGLIPQTTGEAKTTQDVGEEYLIQLTRKSFVDLKLRNFHFGRNEGHEYYVMHDLIYDLATWVSSSECARIAYVNGSERVKRALCHLSVVGINSFPVEAIKSFCQFKYLRTIIFEDSHDIQDDAVRAVEEVLESLKALRVVQCKVQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0006520 | OsNaBo_12g0006520.01 | Chr12 | 5307868 | 5312356 | + | NAM | ||
| CDS seq | atggcatcttctgtactagtgtttgctggaaagtcagttgcatcccccactatctccttctttgccaacaaggccttcaactacctgcagaatcagtaccgtaaggctcaagggattgaggacatgaagatcagactacagaggaacatccccaagatccaatcagtcattgatatcgttgatactgattacatcaaggagagtagcgaagaccttgatacacggctgtggcagctcagggatgcagtcgaggaggctgaggatgccatcgatgagcttgagtattacgatctcaaagagaaggaaaaagatcaaaagtctattaagcatatcagtgttttcggtaagacatctgattgtcctctcaagagattaaagaatgccatggaaggtttagatgaggctgttaaaggcgttgacaattttctcgcacttgtagaccaaatcaaaagaacgactttagacaattcacaacgagttgatgagatgaacaggacatttaaaaggtatttagctggtttcacccaagtcaacttcagtccattttacagtgggaagctcagggacgccgtcgaggaggctgaggatgccatcgatgagctcaagtattacgagctcaaagagaaggagaaagatcaaaaggttagtcaccagggctcttctttcactaagatgaagagcaaatgtttccagtctgttaagcatatcagtgTtttcagtaagacatttgattgccctcttaagaggttaaaggatgcctgtggaagttgtctggatcccaaagaatttgaagacatacgagaagctggagaaaaaataacaaagaaattaagagggtgtcccttggtaacaaagatgtggatagcttcaggattgataccgcagaccacaggcgaagccaaaacgacacaagatgtaggagaagagtacttgattcagctgactagaaagtcgttcgttgacctcaagttgagaaactttcattttggaaggaacgaaggccacgaatattatgtgatgcacgacttaatatatgatttggcaacatgggtttcttccagtgaatgtgcaagaattgcttatgttaatggctccgaaagagtaaaaagagcactatgtcacctctctgttgttggcattaatagcttcccagttgaggccattaaaagtttctgccagttcaaatatctgcgcaccattatctttgaagattcccatgacatccaggacgatgctgtacgtgcagtggaggaagttctagaaagcttaaaagccctgcgtgttgtgcaatgcaaagttcagtag
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| Protein seq | MASSVLVFAGKSVASPTISFFANKAFNYLQNQYRKAQGIEDMKIRLQRNIPKIQSVIDIVDTDYIKESSEDLDTRLWQLRDAVEEAEDAIDELEYYDLKEKEKDQKSIKHISVFGKTSDCPLKRLKNAMEGLDEAVKGVDNFLALVDQIKRTTLDNSQRVDEMNRTFKRYLAGFTQVNFSPFYSGKLRDAVEEAEDAIDELKYYELKEKEKDQKVSHQGSSFTKMKSKCFQSVKHISVFSKTFDCPLKRLKDACGSCLDPKEFEDIREAGEKITKKLRGCPLVTKMWIASGLIPQTTGEAKTTQDVGEEYLIQLTRKSFVDLKLRNFHFGRNEGHEYYVMHDLIYDLATWVSSSECARIAYVNGSERVKRALCHLSVVGINSFPVEAIKSFCQFKYLRTIIFEDSHDIQDDAVRAVEEVLESLKALRVVQCKVQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0204800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10400 | RBH | 0.082925 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0204800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006540 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006620 | RBH | 0.000000 | 0.0 | 0.362968 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006500 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0082700 | RBH | 0.060869 | 0.006372 | 0.0268365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006470 | RBH | 0.000000 | 0.0 | 0.149952 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0088300 | RBH | 0.139509 | 0 | 0.133897 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006380 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006490 | RBH | 1.482277 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006500 | RBH | 0.0 | 0.0 | 0.082105 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006440 | SBH | 0.065702 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006380 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006540 | SBH | 0.0 | 1.817605 | 0.0 |
