Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0204800 | OGI:12014390 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:5475227-5477351 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAACATGGAAACCGCTGTACTAGTGTTTGCAGGGAAGTCACTCGCAACCCCTGCAATCTCCTTCTTTGTCAACAAGGCATTCAGCTACCTGAACGAGTACCGCAAGGCTGAAGGATTGGAGGCCGTGAAGAACAGGCTAGAGGAGAACATACCCAAGATCCAATCAGTGATCGATGTCGCTGATCCTGATTACATCAAGGACAAGAGTGAAGCCCTAGATGCATGGCTGTGGCAGCTCAGAGATGCAGTCGAGGAGGCTGAGGATGCCATCGATGAGCTCGAAGTGGAGAGGGATCAAAATAAGGTTAGTCATCAGGCCGGCTCTTCTTCTTTTACACGGATGAAGCATAAATTTGTCCAGTCTGTTAAGCATGTTAGAGTGTTGGGTACGACATCTAATTCCCCTCTCAAGAGGTTAAAGAAAGCCTTGGAAGGTTTAGATGAGGCTGCTAAAGGAGTCAAGAATTTTCTCACACTTGTACAAATTCATCAAAACACAAGATCCAACTTAAACAATCCAGAACAAGATGATATTAGCTTCCGTGCCAAGGGGAAGGACTTAAATGCTGATAGGGTGTTCGGTAGAGAAAATGAGAAGGAACATATTGTTGGATGGCTGACCAATACATCAAGTGAAGATAACCAAGATGCCAAGAACAATAATCATGTCCCCATTATGTCAATAGTTGGCCATGGCGGCATTGGGAAAACCACTTTGGCTCAGCTCATCTCCCATGACTCCAGAATCAAGAAACATTTTGACACCGTGATCTGGGTTGCTGTATCTATGAGCTTTGATGCAAAAACATTGCTTGATAAAATAATTCAGTCTGTTACATTATTAAAACCTAGTGTTGATACCTACGAGGCACTGCAACAGCATTTGAAAAAGGAGATTGAGACCATTAAATATCTTCTAATTTTAGATGATGTCTGGGAAGATAAGGACATCTCTAAGTGGGAAAATCTATTTTCATCTTTGAGAACAGGAGTGTGTGGAAGGAAGATTTTGTTGACAACCCGAATGCAATCAGTTGCAGATTTAGCATCAGCGGTAATGAGATGTGAAAGGGAGTTCTTCCCATTATGTGGACTTGAAGAAGATGAAAATTTAAGACTTTTTAATCATCATGCCTTCATTAATCCAGATCCCCAAGAATTTGAAGACTTCCAACAAGTTGGAGAAGAAATCGCAAAGAAACTAAGAGGGTGTCCCTTGGTAACTAAGGTTGTCGCTGGGCATCTACGGGCACACATGAAAGTTCAATTTTGGAATACATTTTTGCATGAACATCTGGATAATTTTGATGGAAGTATGGAAGATGTTGTCAAAGTTCTCAAGTTAAGTTACTACCATTTGGTACCTGGCCTACAAGTGTGCTTCCGATATTGTAGCATATTCCCAAAAAACCATGAATTCAAAAAAGAAGAATTGGTGAAGATGTGGATAGCTGCAGGATTGATCTCCCAGACCACAGGTGAAGCAGAGAGAGCACAGGATGCTGCAGAAGAGTACTTGGATCTGCTGAATAGAAAGTCCTTCTTTGAACTCAAGTTGAGAAACTTCCGTTTCGGAAGGAACGAATGCCATGAATATTTTGTGATGCATGACTTAATGCATGATTTGGCAACATGGGTTTCTTCAGGTGAATGTGCAAGAATTGCTGATGTTGCTAGCTCCAAGAAGCTGAAACCAACAGTACGCCACCTATCTGTTGCTGGTATTGATGGTTTTCCAGTCGACGCCATCAAAAGTTTGTCCCAGTTCAAAAATCTGCGCACCATTATCATTGAAGATTGCCATGATATCCAGGATGACACTTCACGGGAAGTGGAGAAAGTTATAGAAAGCTTAAAAGCCCTGCGTGTCGTGCAATACCACATGTTCAGTAGATCCCGATTCCCTGGAAAAGAAGCTAATCTAAAGCACCTTCGTTATGTAAGTGTCTCAATGAATTAGTATGTATAAGACCTAAAGCATGCTTGTGTTGTTTTAATTTTCTTTTTCAAATGTTTTGTGTTAAATCGTGAAATACCTTGTTGTTTGTATCGGATATGGCACTATTTGGAAGGCATGCTTGCAGTGTAATAATAAATTCAAACTTTACATTCTGGCATTTGATCT
More
|
||||||||||
| CDS seq | AACATGGAAACCGCTGTACTAGTGTTTGCAGGGAAGTCACTCGCAACCCCTGCAATCTCCTTCTTTGTCAACAAGGCATTCAGCTACCTGAACGAGTACCGCAAGGCTGAAGGATTGGAGGCCGTGAAGAACAGGCTAGAGGAGAACATACCCAAGATCCAATCAGTGATCGATGTCGCTGATCCTGATTACATCAAGGACAAGAGTGAAGCCCTAGATGCATGGCTGTGGCAGCTCAGAGATGCAGTCGAGGAGGCTGAGGATGCCATCGATGAGCTCGAAGTGGAGAGGGATCAAAATAAGGTTAGTCATCAGGCCGGCTCTTCTTCTTTTACACGGATGAAGCATAAATTTGTCCAGTCTGTTAAGCATGTTAGAGTGTTGGGTACGACATCTAATTCCCCTCTCAAGAGGTTAAAGAAAGCCTTGGAAGGTTTAGATGAGGCTGCTAAAGGAGTCAAGAATTTTCTCACACTTGTACAAATTCATCAAAACACAAGATCCAACTTAAACAATCCAGAACAAGATGATATTAGCTTCCGTGCCAAGGGGAAGGACTTAAATGCTGATAGGGTGTTCGGTAGAGAAAATGAGAAGGAACATATTGTTGGATGGCTGACCAATACATCAAGTGAAGATAACCAAGATGCCAAGAACAATAATCATGTCCCCATTATGTCAATAGTTGGCCATGGCGGCATTGGGAAAACCACTTTGGCTCAGCTCATCTCCCATGACTCCAGAATCAAGAAACATTTTGACACCGTGATCTGGGTTGCTGTATCTATGAGCTTTGATGCAAAAACATTGCTTGATAAAATAATTCAGTCTGTTACATTATTAAAACCTAGTGTTGATACCTACGAGGCACTGCAACAGCATTTGAAAAAGGAGATTGAGACCATTAAATATCTTCTAATTTTAGATGATGTCTGGGAAGATAAGGACATCTCTAAGTGGGAAAATCTATTTTCATCTTTGAGAACAGGAGTGTGTGGAAGGAAGATTTTGTTGACAACCCGAATGCAATCAGTTGCAGATTTAGCATCAGCGGTAATGAGATGTGAAAGGGAGTTCTTCCCATTATGTGGACTTGAAGAAGATGAAAATTTAAGACTTTTTAATCATCATGCCTTCATTAATCCAGATCCCCAAGAATTTGAAGACTTCCAACAAGTTGGAGAAGAAATCGCAAAGAAACTAAGAGGGTGTCCCTTGGTAACTAAGGTTGTCGCTGGGCATCTACGGGCACACATGAAAGTTCAATTTTGGAATACATTTTTGCATGAACATCTGGATAATTTTGATGGAAGTATGGAAGATGTTGTCAAAGTTCTCAAGTTAAGTTACTACCATTTGGTACCTGGCCTACAAGTGTGCTTCCGATATTGTAGCATATTCCCAAAAAACCATGAATTCAAAAAAGAAGAATTGGTGAAGATGTGGATAGCTGCAGGATTGATCTCCCAGACCACAGGTGAAGCAGAGAGAGCACAGGATGCTGCAGAAGAGTACTTGGATCTGCTGAATAGAAAGTCCTTCTTTGAACTCAAGTTGAGAAACTTCCGTTTCGGAAGGAACGAATGCCATGAATATTTTGTGATGCATGACTTAATGCATGATTTGGCAACATGGGTTTCTTCAGGTGAATGTGCAAGAATTGCTGATGTTGCTAGCTCCAAGAAGCTGAAACCAACAGTACGCCACCTATCTGTTGCTGGTATTGATGGTTTTCCAGTCGACGCCATCAAAAGTTTGTCCCAGTTCAAAAATCTGCGCACCATTATCATTGAAGATTGCCATGATATCCAGGATGACACTTCACGGGAAGTGGAGAAAGTTATAGAAAGCTTAAAAGCCCTGCGTGTCGTGCAATACCACATGTTCAGTAGATCCCGATTCCCTGGAAAAGAAGCTAATCTAAAGCACCTTCGTTATGTAAGTGTCTCAATGAATTAG
More
|
||||||||||
| Protein seq | NMETAVLVFAGKSLATPAISFFVNKAFSYLNEYRKAEGLEAVKNRLEENIPKIQSVIDVADPDYIKDKSEALDAWLWQLRDAVEEAEDAIDELEVERDQNKVSHQAGSSSFTRMKHKFVQSVKHVRVLGTTSNSPLKRLKKALEGLDEAAKGVKNFLTLVQIHQNTRSNLNNPEQDDISFRAKGKDLNADRVFGRENEKEHIVGWLTNTSSEDNQDAKNNNHVPIMSIVGHGGIGKTTLAQLISHDSRIKKHFDTVIWVAVSMSFDAKTLLDKIIQSVTLLKPSVDTYEALQQHLKKEIETIKYLLILDDVWEDKDISKWENLFSSLRTGVCGRKILLTTRMQSVADLASAVMRCEREFFPLCGLEEDENLRLFNHHAFINPDPQEFEDFQQVGEEIAKKLRGCPLVTKVVAGHLRAHMKVQFWNTFLHEHLDNFDGSMEDVVKVLKLSYYHLVPGLQVCFRYCSIFPKNHEFKKEELVKMWIAAGLISQTTGEAERAQDAAEEYLDLLNRKSFFELKLRNFRFGRNECHEYFVMHDLMHDLATWVSSGECARIADVASSKKLKPTVRHLSVAGIDGFPVDAIKSLSQFKNLRTIIIEDCHDIQDDTSREVEKVIESLKALRVVQYHMFSRSRFPGKEANLKHLRYVSVSMN |
||||||||||
| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0204800 | OsNip_12t0204800-01 | Chr12 | 5475227 | 5477351 | + | RAP2018-11-26 | ||
| CDS seq | AACATGGAAACCGCTGTACTAGTGTTTGCAGGGAAGTCACTCGCAACCCCTGCAATCTCCTTCTTTGTCAACAAGGCATTCAGCTACCTGAACGAGTACCGCAAGGCTGAAGGATTGGAGGCCGTGAAGAACAGGCTAGAGGAGAACATACCCAAGATCCAATCAGTGATCGATGTCGCTGATCCTGATTACATCAAGGACAAGAGTGAAGCCCTAGATGCATGGCTGTGGCAGCTCAGAGATGCAGTCGAGGAGGCTGAGGATGCCATCGATGAGCTCGAAGTGGAGAGGGATCAAAATAAGGTTAGTCATCAGGCCGGCTCTTCTTCTTTTACACGGATGAAGCATAAATTTGTCCAGTCTGTTAAGCATGTTAGAGTGTTGGGTACGACATCTAATTCCCCTCTCAAGAGGTTAAAGAAAGCCTTGGAAGGTTTAGATGAGGCTGCTAAAGGAGTCAAGAATTTTCTCACACTTGTACAAATTCATCAAAACACAAGATCCAACTTAAACAATCCAGAACAAGATGATATTAGCTTCCGTGCCAAGGGGAAGGACTTAAATGCTGATAGGGTGTTCGGTAGAGAAAATGAGAAGGAACATATTGTTGGATGGCTGACCAATACATCAAGTGAAGATAACCAAGATGCCAAGAACAATAATCATGTCCCCATTATGTCAATAGTTGGCCATGGCGGCATTGGGAAAACCACTTTGGCTCAGCTCATCTCCCATGACTCCAGAATCAAGAAACATTTTGACACCGTGATCTGGGTTGCTGTATCTATGAGCTTTGATGCAAAAACATTGCTTGATAAAATAATTCAGTCTGTTACATTATTAAAACCTAGTGTTGATACCTACGAGGCACTGCAACAGCATTTGAAAAAGGAGATTGAGACCATTAAATATCTTCTAATTTTAGATGATGTCTGGGAAGATAAGGACATCTCTAAGTGGGAAAATCTATTTTCATCTTTGAGAACAGGAGTGTGTGGAAGGAAGATTTTGTTGACAACCCGAATGCAATCAGTTGCAGATTTAGCATCAGCGGTAATGAGATGTGAAAGGGAGTTCTTCCCATTATGTGGACTTGAAGAAGATGAAAATTTAAGACTTTTTAATCATCATGCCTTCATTAATCCAGATCCCCAAGAATTTGAAGACTTCCAACAAGTTGGAGAAGAAATCGCAAAGAAACTAAGAGGGTGTCCCTTGGTAACTAAGGTTGTCGCTGGGCATCTACGGGCACACATGAAAGTTCAATTTTGGAATACATTTTTGCATGAACATCTGGATAATTTTGATGGAAGTATGGAAGATGTTGTCAAAGTTCTCAAGTTAAGTTACTACCATTTGGTACCTGGCCTACAAGTGTGCTTCCGATATTGTAGCATATTCCCAAAAAACCATGAATTCAAAAAAGAAGAATTGGTGAAGATGTGGATAGCTGCAGGATTGATCTCCCAGACCACAGGTGAAGCAGAGAGAGCACAGGATGCTGCAGAAGAGTACTTGGATCTGCTGAATAGAAAGTCCTTCTTTGAACTCAAGTTGAGAAACTTCCGTTTCGGAAGGAACGAATGCCATGAATATTTTGTGATGCATGACTTAATGCATGATTTGGCAACATGGGTTTCTTCAGGTGAATGTGCAAGAATTGCTGATGTTGCTAGCTCCAAGAAGCTGAAACCAACAGTACGCCACCTATCTGTTGCTGGTATTGATGGTTTTCCAGTCGACGCCATCAAAAGTTTGTCCCAGTTCAAAAATCTGCGCACCATTATCATTGAAGATTGCCATGATATCCAGGATGACACTTCACGGGAAGTGGAGAAAGTTATAGAAAGCTTAAAAGCCCTGCGTGTCGTGCAATACCACATGTTCAGTAGATCCCGATTCCCTGGAAAAGAAGCTAATCTAAAGCACCTTCGTTATGTAAGTGTCTCAATGAATTAG
More
|
|||||||
| Protein seq | NMETAVLVFAGKSLATPAISFFVNKAFSYLNEYRKAEGLEAVKNRLEENIPKIQSVIDVADPDYIKDKSEALDAWLWQLRDAVEEAEDAIDELEVERDQNKVSHQAGSSSFTRMKHKFVQSVKHVRVLGTTSNSPLKRLKKALEGLDEAAKGVKNFLTLVQIHQNTRSNLNNPEQDDISFRAKGKDLNADRVFGRENEKEHIVGWLTNTSSEDNQDAKNNNHVPIMSIVGHGGIGKTTLAQLISHDSRIKKHFDTVIWVAVSMSFDAKTLLDKIIQSVTLLKPSVDTYEALQQHLKKEIETIKYLLILDDVWEDKDISKWENLFSSLRTGVCGRKILLTTRMQSVADLASAVMRCEREFFPLCGLEEDENLRLFNHHAFINPDPQEFEDFQQVGEEIAKKLRGCPLVTKVVAGHLRAHMKVQFWNTFLHEHLDNFDGSMEDVVKVLKLSYYHLVPGLQVCFRYCSIFPKNHEFKKEELVKMWIAAGLISQTTGEAERAQDAAEEYLDLLNRKSFFELKLRNFRFGRNECHEYFVMHDLMHDLATWVSSGECARIADVASSKKLKPTVRHLSVAGIDGFPVDAIKSLSQFKNLRTIIIEDCHDIQDDTSREVEKVIESLKALRVVQYHMFSRSRFPGKEANLKHLRYVSVSMN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0204600 | RBH | 0.0 | 0.0 | 1.282113 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10340 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0204800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006510 | RBH | 0.0 | 1.520355 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006580 | RBH | 0.0 | 2.430407 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006590 | RBH | 0.202280 | 15.491534 | 0.318011 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006490 | RBH | 0.0 | 0.922022 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006460 | RBH | 0.0 | 0.0 | 2.151775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0081900 | RBH | 0.032495 | 0.1630855 | 0.101257 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006430 | RBH | 0.0 | 0.152614 | 0.117264 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0087900 | RBH | 0.1781615 | 0.3165795 | 0.1786335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006340 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006440 | RBH | 0.065702 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006350 | RBH | 0.0 | 15.807481 | 0.083024 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006490 | RBH | 0.0 | 0.0 | 1.195176 |
