Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0001500 | OGI:12003740 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:1037495-1042457 | ||||||||
| Gene Symbol | WRI1-2, AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b | ||||||||||
| DNA seq | atggcgaagagatcgtctcctgatcctgcatcatcttctccatctgcatcatcctcgccgtcgtctccttcctcctcttcctccgaggattcctcttcgcccatgtcgatgccctgcaagaggagggcgaggccgaggacggagaagagcaccggcaaggccaagaggcccaagaaggagagcaaggaggtggctgatccttcttccaatggcggcggcggcggcaagaggagttctatctacaggggagtcaccaggtatgcgtccctgcatgttcagttgcttccatccctctgatcccaattctgctgttctttctgatcccctctcgatttcagtcgcgaattcatcctgcattgccgctagttaatcaatggctgatttccagcccaaaattccgcatcatttccatcctttcaggctcccaaaattaccagccgcttctttccaatctgttcctgaatattttcacttgcatgtcagagatcatcagttattttatcgttttgtgggtgccgagtctgctccccttttcatgcctcatcttttggaggttggcgagcatgatcgatcggatccatttcttgatctcataattcccatttttaatcttttttcttgctgctcctccccttggagtgagtcaattattattagctgggaagtagggagttggttgatctacatttactgctggggtggtcaactccttcagtttttcttcctcctgtaaagcaaacactaatgcttgaatgctgcttatttatcaatcattaataaattcaatatacggtggaatcatttgctgcatgcatgtgtctataaacaggcatcggtggactggcagatttgaggcccatctgtgggacaagaattgctccacttcacttcagaacaagaagaaagggaggcaaggtacattgatcgcaacatgcattagttgcctaattttttttaggatttttaacatgaattttatctgaaaatgctgtaaagaaagtgaaattgagtatttttacagtataatgtactataatgaaagaaaaagtgaaacatacaaggtccttggtgtacttctgtatactgccaaggatcttgatacatcggccattagtacaaagcttattactataaagtggagcgaattttttaaggctgacattctgattaagcTttttttatctcctttcttttttgctgttatctttgggggaccttgcccttgtgatgcgcatgtgaccttgatctgctgctgctgcttgatgctcctctcaatagtctatttgggtaagtcccacaaactagttgtctatacaccctgttttgtcagattcatgctgcatgttgcttcctgttcttgtataatctcacattttgtttgtttgatctgtcacatccttggtttgtctcaatatgaaaacagtttatccctaagagtataggcatatagcaactagttgttacataactacttattgtgttggtgtttgatctgtttctgaacattagtgcaatgtttaatggtgtttaggggcttatgatagtgaggaagcagctgctcgtgcatatgaccttgcagctcttaagtactggggtcctgagacagtgctcaatttcccagtaagtttgccaacttaccactagacaattgcgacttgtgtaatctgaattattactgaagataatgtgaattattgcagctggaggaatatgagaaggagaggtcggagatggagggtgtgtcgagggaggagtacctggcctccctccgccgccggagcagcggtttctccaggggtgtctccaagtacagaggcgttgccaggtaggactactgattaattaactctaattaatctctctctctctctctccccctgaatgatgagtcagcatagtattgctagctagggtggcattcatcagctggcaacgtcatttgccagccgtgtatgctctgcatggatgccccatggtctctttcttgtgtcagtttcgtgcaatgtcatgtatgcatctaggaaaagtcagaactgcaaaagttttaagcttctctctttcttgatgaaatctgcttccaacatcagttactgtattgtggtgccagtgctaccaacttgctgtttccattttgttcagagctagtagctgtctgttagtaattcatttctgaacTtttttttttgtctggttttgttcaggcatcaccacaatgggcggtgggaggcacggatagggcgggtcctggggaacaagtacctctacctgggtactttcggtacgtattctttcatccaatctttcatgctctttgctcttctttctttcttggagcccacttaacttaatcaaatgctgattactagcatttacaagccgctcttgtttgttggagaatttgcctgctgtaagccggctacctaacttacaccaaattttatgatggttgatcaacccatctgcgaaattaaatggcgtgtttttcttgtttcccttcgatgtagatttgaccccttgcttttcttgaggattgcttactaggtagtacttcctctgtatcaaaatagagacagttttagatttcaatataattttcgggatgctactttgaccaataatatttataaaaacaagttatcttaaatgaaagagttacatattatgatactagtttgagtaaatttcataaaactgcagatattttgcatgatctatcacaaaactacagatttaagaacttgttttacaaaactacagattcagtggcttcgtttatcacaaaactacaggtactttgcgcaatatatcacaaaactaaagatttaagtacttattttacaaaactacagatttagtatcttcatttatcacaaaactacaagtttaatggcttcattatcacaaaactacaagttttagcgttgttaaaacttgtagttttgtgataatggaaacactaaatctgtagttttgtgataaatgaagacactaaatgtgtagttttgtgataaacgaatacactaaatctatagttttgtgaaacaagttcttaaatcgtagttttgtgatagattgtacaaactacctgtagttttgtgataaacggagacactaaatctgtagttttgtgagacaagctttttaatatgtagttttgtgataaattgtgcaaaatacctatagttttattaaatttactctataatctagtaacattattcttacgtgattgctctttttaatttttcattattaatagttaaagttaaaaatattgatttaggactattttaaaaatgcttatattttagaacagtagtatatattattctccttgtatgttcttgaaccacaaactctccattttactataaattaagtgagctggtgatatcactgatatggaagcatagtgttgaaacttctttttcttttactttaaaaaatcagaaaatcttttcctgctgtcaagatcaaagaccatgagaccaagataccatcctgtatgcaatccccagaagactgcccaacttgccctagaaatagcataaaaacaagccccatgtcttgatcaccaccatgtcctaattactagacaaaatcctagtatacatagatacattatatggtacatgacttggaaatgcatgtgacaagcacgtgagtggtgctgcaatgccagtagtaaaaaccagatggtgcatagggatcttcaattgttcatcactgccggctctttccactagagctagctgagtgagtcagcagccagttgcaagtgatcacttcacgtgcatggagaatgccctactaggctattaCcccccctgtgccaaactagatcaagattcaagatccagaaccacacagatggattcatcactactttcatcacaaataaagaaagaaaaaagggagagtgaacagtgttcaccgattactagtaaacagaaggttgccagcacagttctagcaaccagcaatgtgggaaaagtcatgtcagatctcagatggtgtccagcacatgtcaaactagaaagtgAaaaaaaatgtgaatatgggatgcaattcagcatctctcagtattaagattcaatgcattcattttctaaagtcttaaatctatatagcatgacctgatcaattgtgtaatgccaatgttactagaagtattcatgactcctagtagtactaagttgccccaaagattcagtgtctcaccagaaaatttgttctcatttcaacaaacgtacctctttttacagatactcaagaggaggcagccaaggcctatgatcttgctgcaatcgaataccgaggtgccaatgcggtaaccaacttcgacatcagctgctacctggaccagccacagttactggcacagctgcaacaggaaccacagttattggcacaactgcaacaagagccacaggtggtgccagcattacatgaagagcctcaagatgatgaccgaagtgagaatgcagtccaagagctcagttccagtgaagcaaatacatcaagtgacaacaatgagccacttgcagccgatgacagcgccgaatgcacgaatgaaccccttccaactgttgatggcattgaagaaagcctctggagcccttgcttggattatgaattggatacaatgcctggggcttacttcagcaactcgatgaatttcagtgaatggttcaatgatgaggcattcgaaggcggcatggagtacctatttgaagggtgctccagtataactgaaggcggcaacagcatggataactcaggtgtggcacaatacaatttgtttgaggaatgcaatatgttggagaaggacatttcagattttttagacaaggacatttcagactttttagacaaggacatttcaatttcagatagggagcgaatatctcctcaagcaaacaatatctcctgccctcaaaaaatgatcagtgtgtgcaactga
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| CDS seq | atggcgaagagatcgtctcctgatcctgcatcatcttctccatctgcatcatcctcgccgtcgtctccttcctcctcttcctccgaggattcctcttcgcccatgtcgatgccctgcaagaggagggcgaggccgaggacggagaagagcaccggcaaggccaagaggcccaagaaggagagcaaggaggtggctgatccttcttccaatggcggcggcggcggcaagaggagttctatctacaggggagtcaccaggcatcggtggactggcagatttgaggcccatctgtgggacaagaattgctccacttcacttcagaacaagaagaaagggaggcaaggggcttatgatagtgaggaagcagctgctcgtgcatatgaccttgcagctcttaagtactggggtcctgagacagtgctcaatttcccactggaggaatatgagaaggagaggtcggagatggagggtgtgtcgagggaggagtacctggcctccctccgccgccggagcagcggtttctccaggggtgtctccaagtacagaggcgttgccaggcatcaccacaatgggcggtgggaggcacggatagggcgggtcctggggaacaagtacctctacctgggtactttcgccgatgacagcgccgaatgcacgaatgaaccccttccaactgttgatggcattgaagaaagcctctggagcccttgcttggattatgaattggatacaatgcctggggcttacttcagcaactcgatgaatttcagtgaatggttcaatgatgaggcattcgaaggcggcatggagtacctatttgaagggtgctccagtataactgaaggcggcaacagcatggataactcaggtgtggcacaatacaatttgtttgaggaatgcaatatgttggagaaggacatttcagattttttagacaaggacatttcagactttttagacaaggacatttcaatttcagatagggagcgaatatctcctcaagcaaacaatatctcctgccctcaaaaaatgatcagtgtgtgcaactga
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| Protein seq | MAKRSSPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKRRARPRTEKSTGKAKRPKKESKEVADPSSNGGGGGKRSSIYRGVTRHRWTGRFEAHLWDKNCSTSLQNKKKGRQGAYDSEEAAARAYDLAALKYWGPETVLNFPLEEYEKERSEMEGVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTFADDSAECTNEPLPTVDGIEESLWSPCLDYELDTMPGAYFSNSMNFSEWFNDEAFEGGMEYLFEGCSSITEGGNSMDNSGVAQYNLFEECNMLEKDISDFLDKDISDFLDKDISISDRERISPQANNISCPQKMISVCN |
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| Function | Ethylene-responsive transcription factor WRI1 [UniProtKB/Swiss-Prot:Q6X5Y6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001500 | OsNaBo_12g0001500.01 | Chr12 | 1037495 | 1042457 | + | NAM | ||
| CDS seq | atggcgaagagatcgtctcctgatcctgcatcatcttctccatctgcatcatcctcgccgtcgtctccttcctcctcttcctccgaggattcctcttcgcccatgtcgatgccctgcaagaggagggcgaggccgaggacggagaagagcaccggcaaggccaagaggcccaagaaggagagcaaggaggtggctgatccttcttccaatggcggcggcggcggcaagaggagttctatctacaggggagtcaccaggcatcggtggactggcagatttgaggcccatctgtgggacaagaattgctccacttcacttcagaacaagaagaaagggaggcaaggggcttatgatagtgaggaagcagctgctcgtgcatatgaccttgcagctcttaagtactggggtcctgagacagtgctcaatttcccactggaggaatatgagaaggagaggtcggagatggagggtgtgtcgagggaggagtacctggcctccctccgccgccggagcagcggtttctccaggggtgtctccaagtacagaggcgttgccaggcatcaccacaatgggcggtgggaggcacggatagggcgggtcctggggaacaagtacctctacctgggtactttcgccgatgacagcgccgaatgcacgaatgaaccccttccaactgttgatggcattgaagaaagcctctggagcccttgcttggattatgaattggatacaatgcctggggcttacttcagcaactcgatgaatttcagtgaatggttcaatgatgaggcattcgaaggcggcatggagtacctatttgaagggtgctccagtataactgaaggcggcaacagcatggataactcaggtgtggcacaatacaatttgtttgaggaatgcaatatgttggagaaggacatttcagattttttagacaaggacatttcagactttttagacaaggacatttcaatttcagatagggagcgaatatctcctcaagcaaacaatatctcctgccctcaaaaaatgatcagtgtgtgcaactga
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| Protein seq | MAKRSSPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKRRARPRTEKSTGKAKRPKKESKEVADPSSNGGGGGKRSSIYRGVTRHRWTGRFEAHLWDKNCSTSLQNKKKGRQGAYDSEEAAARAYDLAALKYWGPETVLNFPLEEYEKERSEMEGVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTFADDSAECTNEPLPTVDGIEESLWSPCLDYELDTMPGAYFSNSMNFSEWFNDEAFEGGMEYLFEGCSSITEGGNSMDNSGVAQYNLFEECNMLEKDISDFLDKDISDFLDKDISISDRERISPQANNISCPQKMISVCN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0126300 | SBH | 0.0 | 0.373416 | 1.062336 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03290 | SBH | 0.0 | 0.213839 | 0.464284 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0126300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001730 | SBH | 0.000000 | 2.038500 | 0.489455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001940 | SBH | 0.0 | 2.012270 | 0.166908 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001950 | SBH | 0.0 | 2.068446 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001750 | SBH | 0.0 | 0.354753 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001860 | SBH | 0.0 | 0.000000 | 1.791224 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0027500 | SBH | 0.1107935 | 0.1592355 | 0.045951 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001870 | SBH | 0.0 | 0.170784 | 0.085646 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0026500 | SBH | 0.4703805 | 0.2464425 | 1.29063 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001740 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001930 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001920 | SBH | 0.0 | 4.474752 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001860 | SBH | 0.0 | 0.0 | 0.305150 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001410 | RBH | 0.0 | 2.523943 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001310 | RBH | 0.0 | 1.222613 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001830 | RBH | 0.452617 | 0.000000 | 0.000000 |
