Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0126300 | OGI:12003740 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1269804-1274766 | ||||||||
| Gene Symbol | WRI1-1, AP2/EREBP131, AP2/EREBP#131, OsWRI1-1, OsWRI1a, WRI1-2, AP2/EREBP155, AP2/EREBP#155, OsWRI1-2, OsWRI1b | ||||||||||
| DNA seq | TCAGTTGCACACACTGATCATTTTTTGAGGGCAGGAGATATTGTTTGCTTGAGGAGATATTCGCTCCCTATCTGAAATTGAAATGTCCTTGTCTAAAAAGTCTGAAATGTCCTTGTCTAAAAAATCTGAAATGTCCTTCTCCAACATATTGCATTCCTCAAACAAATTGTATTCTGCCATACCTGAGTTATCCATGCTGTTGCCGCCTTCAGTTATACTGGAGCACCCTTCAAATAGGTACTCCATGCCGCCTTCGAATGCCTCATCATTGAACCATTCACTGAAATTCATCGAGTTGCTGAAGTAAGCCCCAGGCATTGTATCCAATTCATAATCCAAGCAAGGGCTCCAGAGGCTTTCTTCAATGCCATCAACAATTGGAAGGGGTTCATTCATGCATTCGGCGCTGTCATCGGCTGCAAGTGGCTCATTGTTGTCACTTGATGTATTTGCTTCACTGGAACTGAGCTCTTGGACTGCATTCTCACTTCGGTCATCATCTTGAGGCTCTTCATGTAATGCTGGCACCACCTGTGGCTCTTGTTGCAGTTGTGCCAATAACTGTGGTTCCTGTTGCAGCTGTGCCAGTAACTGTGGCTGGTCCAGGTAGCAGCTGATGTCGAAGTTGGTTACCGCATTGGCACCTCGGTATTCGATTGCAGCAAGATCATAGGCCTTGGCTGCCTCCTCTTGAGTATCTGTAAAAAGAGGTACGTTTGTTGAAATGAGAACAAATTTTCTGGTGAGACACTGAATCTTTGGGGCAACTTAGTACTACTAGGAGTCATGAATACTTCTAGTAACATTGGCATTACAGAATTGATCAGGTCATGCTGTATAGATTTAAGACTTTAGAAAATGAATGCATTGGATCTTAATACTGAGAGATGCTGAATTGCATCCCATATTCACATTTTTTTTCACTTTCTAGTTTGACATGTGCTGGACACCATCTGAGATCTGATATGACTTTTCCCACATTGCTGGTTGCTAGAACTGTGCTGGCAACCTTCTGTTTACTAGTAATCGGTGAACACTGTTCACTCTCCCTTTTTTCTTTCTTTATTTGTGATGAAAGTAGTGATGAATCCATCTGTGTGGTTCTGGATCTTGAATCTTGATCTAGTTTGGCACAGGGGGGGTAATAGCCTAGTAGGGCATTCTCCATGCACGTGAAGTGATCACTTGCAACTGGCTGCTGACTCACTCAGCTAGCTCTAGTGGAAAGAGCCGGCAGTGATGAACAATTGAAGATCCCTATGCACCATCTGGTTTTTACTACTGGCATTGCAGCACCACTCACGTGCTTGTCACATGCATTTCCAAGTCATGTACCATATAATGTATCTATGTATACTAGGATTTTGTCTAGTAATTAGGACATGGTGGTGATCAAGACATGGGGCTTGTTTTTATGCTATTTCTAGGGCAAGTTGGGCAGTCTTCTGGGGATTGCATACAGGATGGTATCTTGGTCTCATGGTCTTTGATCTTGACAGCAGGAAAAGATTTTCTGATTTTTTTAAGTAAAAGAAAAAGAAGTTTCAACACTATGCTTCCATATCAGTGATATCACCAGCTCACTTAATTTATAGTAAAATGGAGAGTTTGTGGTTCAAGAACATACAAGGAGAATAATATATACTACTTTCTCTGTTCTAAAATATAAGCATTTTTAGAATAGTCCTAAATCAACATTTTTAACTTTAACTATTAATAATGAAAAATTAAAAAGAGCAATCACGTAAGAATAATGTTACTAGATTATAGAGTAAATTTAATAAAACTATAGGTATTTTGCATAATTTATCACAAAACTACATATTAAAAAGCTTGTCTCACAAAACTACAGATTTAGTGTCTCCGTTTATCACAAAACTACAGGTAGTTTGTACAATCTATCACAAAACTACGATTTAAGAACTTTCACAAAACTATAGATTTAGTGTATTCGTTTATCACAAAACTACACATTTAGTGTCTTCATTTATCACAAAACTACAGATTTAGTGTCTCCATTATCACAAAACTACAAGTTTTAACAACGCTAAAACTTGTAGTTTTGTGATAATGAAGCCATTAAACTTGTAGTTTTGTGATAAATGAAGATACTAAATCTGTAGTTTTGTGAAATAAGTACTTAAATCTTTAGTTTTGTGATATATTGCGCAAAGTACCTGTAGTTTTGTGAAAAACGAAGCCACTGAATCTGTAGTTTTGTAAAACAAGTTCTTAAATCTGTAGTTTTGTGATAGATCGTGCAAAATATCTGCAGTTTTATGAAATTTACTCAAACTAGTATCATAATATGTAACTCTTTCATTTAAGATAACTTGTTTTTATAAATATTATTGGTCAAAGTAGCATCCCGAAAATTATATTGAAATCTAAAACTGTCTCTATTTTGAGACAGAGGAAGTACTACCTAGTAAGTAATCCTCAAGAAAAGCAAGGGGTCAAATCTACATCGAAGGGAAACAAGAAAAACACGCCATTTAATTTCGCAGATGGGTTGATCAACCATCATAAAATTTGGTAAAAGTTAGGTGGCCGGCTTACAGCAGGCAAATTCTCCAACAAACAAGAGCGGCTTGTAAATGCTAGTAATCAGCATTTGATTAAGTTAAGTGGGCTCCAAGAAAGAAAGAAGAGCAAAGAGCATGAAAGATTGGATGAAAGAATACGTACCGAAAGTACCCAGGTAGAGGTACTTGTTCCCCAGGACCCGCCCTATCCGTGCCTCCCACCGCCCATTGTGGTGATGCCTGAACAAAACCAGACAAAAAAAAAGTTCAGAAATGAATTACTAACAGACAGCTACTAGCTCTGAACAAAATGGAAACAGCAAGTTGGTAGCACTGGCACCACAATACAGTAACTGATGTTGGAAGCAGATTTCATCAAGAAAGAGAGAAGCTTAAAACTTTTGCAGTTCTGACTTTTCCTAGATGCATGCATGACATTGCACGAAACTGACACAAGAAAGAGACCATGGGGCATCCATGCAGAGCATACACGGCTGGCAAATGACGTTGCCAGCTGATGAATGCCACCCTAGCTAGCAATACTATGCTGACTCATCATTCAGGGAGAGAGAGAGAGAGAGATTAATTAGAGTTAATTAATCAGTAGTCCTACCTGGCAACGCCTCTGTACTTGGAGACACCCCTGGAGAAACCGCTGCTCCGGCGGCGGAGGGAGGCCAGGTACTCCTCCCTCGACACACCCTCCATCTCCGACCTCTCCTTCTCATATTCCTCCAGCTGCAATAATTCACATTATCTTCAGTAATAATTCAGATTACACAAGTCGCAATTGTCTAGTGGTAAGTTGGCAAACTTACTGGGAAATTGAGCACTGTCTCAGGACCCCAGTACTTAAGAGCTGCAAGGTCATATGCACGAGCAGCTGCTTCCTCACTATCATAAGCCCCTAAACACCATTAAACATTGCACTAATGTTCAGAAACAGATCAAACACCAACACAATAAGTAGTTATGTAACAACTAGTTGCTATATGCCTATATTCTTAGGGATAAACTGTTTTCATATTGAGACAAACCAAGGATGTGACAGATCAAACAAACAAAATGTGAGATTATACAAGAACAGGAAGCAACATGCAGCATGAATCTGACAAAACAGGGTGTATAGACAACTAGTTTGTGGGACTTACCCAAATAGACTATTGAGAGGAGCATCAAGCAGCAGCAGCAGATCAAGGTCACATGCGCATCACAAGGGCAAGGTCCCCCAAAGATAACAGCAAAAAAGAAAGGAGATAAAAAAAGCTTAATCAGAATGTCAGCCTTAAAAAATTCGCTCCACTTTATAGTAATAAGCTTTGTACTAATGGCCGATGTATCAAGATCCTTGGCAGTATACAGAAGTACACCAAGGACCTTGTATGTTTCACTTTTTCTTTCATTATAGTACATTATACTGTAAAAATACTCAATTTCACTTTCTTTACAGCATTTTCAGATAAAATTCATGTTAAAAATCCTAAAAAAAATTAGGCAACTAATGCATGTTGCGATCAATGTACCTTGCCTCCCTTTCTTCTTGTTCTGAAGTGAAGTGGAGCAATTCTTGTCCCACAGATGGGCCTCAAATCTGCCAGTCCACCGATGCCTGTTTATAGACACATGCATGCAGCAAATGATTCCACCGTATATTGAATTTATTAATGATTGATAAATAAGCAGCATTCAAGCATTAGTGTTTGCTTTACAGGAGGAAGAAAAACTGAAGGAGTTGACCACCCCAGCAGTAAATGTAGATCAACCAACTCCCTACTTCCCAGCTAATAATAATTGACTCACTCCAAGGGGAGGAGCAGCAAGAAAAAAGATTAAAAATGGGAATTATGAGATCAAGAAATGGATCCGATCGATCATGCTCGCCAACCTCCAAAAGATGAGGCATGAAAAGGGGAGCAGACTCGCCACCCACAAAACGATAAAATAACTGATGATCTCTGACATGCAAGTGAAAATATTCAGGAACAGATTGGAAAGAAGCGGCTGGTAATTTTGGGAGCCTGAAAGGATGGAAATGATGCGGAATTTTGGGCTGGAAATCAGCCATTGATTAACTAGCGGCAATGCAGGATGAATTCGCGACTGAAATCGAGAGGGGATCAGAAAGAACAGCAGAATTGGGATCAGAGGGATGGAAGCAACTGAACATGCAGGGACGCATACCTGGTGACTCCCCTGTAGATAGAACTCCTCTTGCCGCCGCCGCCGCCATTGGAAGAAGGATCAGCCACCTCCTTGCTCTCCTTCTTGGGCCTCTTGGCCTTGCCGGTGCTCTTCTCCGTCCTCGGCCTCGCCCTCCTCTTGCAGGGCATCGACATGGGCGAAGAGGAATCCTCGGAGGAAGAGGAGGAAGGAGACGACGGCGAGGATGATGCAGATGGAGAAGATGATGCAGGATCAGGAGACGATCTCTTCGCCAT
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| CDS seq | ATGGCGAAGAGATCGTCTCCTGATCCTGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTCCTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCCGAGGACGGAGAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGCTGATCCTTCTTCCAATGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAGGGGAGTCACCAGGCATCGGTGGACTGGCAGATTTGAGGCCCATCTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTATTTGGGGGCTTATGATAGTGAGGAAGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAGTACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCGGAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGTTTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGGGAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACTCAAGAGGAGGCAGCCAAGGCCTATGATCTTGCTGCAATCGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTATTGGCACAACTGCAACAAGAGCCACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCCGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCATTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTAGACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGA
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| Protein seq | MAKRSSPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKRRARPRTEKSTGKAKRPKKESKEVADPSSNGGGGGKRSSIYRGVTRHRWTGRFEAHLWDKNCSTSLQNKKKGRQVYLGAYDSEEAAARAYDLAALKYWGPETVLNFPLEEYEKERSEMEGVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTFDTQEEAAKAYDLAAIEYRGANAVTNFDISCYLDQPQLLAQLQQEPQLLAQLQQEPQVVPALHEEPQDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVDGIEESLWSPCLDYELDTMPGAYFSNSMNFSEWFNDEAFEGGMEYLFEGCSSITEGGNSMDNSGMAEYNLFEECNMLEKDISDFLDKDISDFLDKDISISDRERISPQANNISCPQKMISVCN |
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| Function | Ethylene-responsive transcription factor WRI1 [UniProtKB/Swiss-Prot:Q6X5Y6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0126300 | OsNip_12t0126300-00 | Chr12 | 1269804 | 1274766 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGAAGAGATCGTCTCCTGATCCTGCATCATCTTCTCCATCTGCATCATCCTCGCCGTCGTCTCCTTCCTCCTCTTCCTCCGAGGATTCCTCTTCGCCCATGTCGATGCCCTGCAAGAGGAGGGCGAGGCCGAGGACGGAGAAGAGCACCGGCAAGGCCAAGAGGCCCAAGAAGGAGAGCAAGGAGGTGGCTGATCCTTCTTCCAATGGCGGCGGCGGCGGCAAGAGGAGTTCTATCTACAGGGGAGTCACCAGGCATCGGTGGACTGGCAGATTTGAGGCCCATCTGTGGGACAAGAATTGCTCCACTTCACTTCAGAACAAGAAGAAAGGGAGGCAAGTCTATTTGGGGGCTTATGATAGTGAGGAAGCAGCTGCTCGTGCATATGACCTTGCAGCTCTTAAGTACTGGGGTCCTGAGACAGTGCTCAATTTCCCACTGGAGGAATATGAGAAGGAGAGGTCGGAGATGGAGGGTGTGTCGAGGGAGGAGTACCTGGCCTCCCTCCGCCGCCGGAGCAGCGGTTTCTCCAGGGGTGTCTCCAAGTACAGAGGCGTTGCCAGGCATCACCACAATGGGCGGTGGGAGGCACGGATAGGGCGGGTCCTGGGGAACAAGTACCTCTACCTGGGTACTTTCGATACTCAAGAGGAGGCAGCCAAGGCCTATGATCTTGCTGCAATCGAATACCGAGGTGCCAATGCGGTAACCAACTTCGACATCAGCTGCTACCTGGACCAGCCACAGTTACTGGCACAGCTGCAACAGGAACCACAGTTATTGGCACAACTGCAACAAGAGCCACAGGTGGTGCCAGCATTACATGAAGAGCCTCAAGATGATGACCGAAGTGAGAATGCAGTCCAAGAGCTCAGTTCCAGTGAAGCAAATACATCAAGTGACAACAATGAGCCACTTGCAGCCGATGACAGCGCCGAATGCATGAATGAACCCCTTCCAATTGTTGATGGCATTGAAGAAAGCCTCTGGAGCCCTTGCTTGGATTATGAATTGGATACAATGCCTGGGGCTTACTTCAGCAACTCGATGAATTTCAGTGAATGGTTCAATGATGAGGCATTCGAAGGCGGCATGGAGTACCTATTTGAAGGGTGCTCCAGTATAACTGAAGGCGGCAACAGCATGGATAACTCAGGTATGGCAGAATACAATTTGTTTGAGGAATGCAATATGTTGGAGAAGGACATTTCAGATTTTTTAGACAAGGACATTTCAGACTTTTTAGACAAGGACATTTCAATTTCAGATAGGGAGCGAATATCTCCTCAAGCAAACAATATCTCCTGCCCTCAAAAAATGATCAGTGTGTGCAACTGA
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| Protein seq | MAKRSSPDPASSSPSASSSPSSPSSSSSEDSSSPMSMPCKRRARPRTEKSTGKAKRPKKESKEVADPSSNGGGGGKRSSIYRGVTRHRWTGRFEAHLWDKNCSTSLQNKKKGRQVYLGAYDSEEAAARAYDLAALKYWGPETVLNFPLEEYEKERSEMEGVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTFDTQEEAAKAYDLAAIEYRGANAVTNFDISCYLDQPQLLAQLQQEPQLLAQLQQEPQVVPALHEEPQDDDRSENAVQELSSSEANTSSDNNEPLAADDSAECMNEPLPIVDGIEESLWSPCLDYELDTMPGAYFSNSMNFSEWFNDEAFEGGMEYLFEGCSSITEGGNSMDNSGMAEYNLFEECNMLEKDISDFLDKDISDFLDKDISISDRERISPQANNISCPQKMISVCN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.373416 | 1.062336 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0129700 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03290 | RBH | 0.0 | 0.213839 | 0.464284 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0126300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001730 | RBH | 0.000000 | 2.038500 | 0.489455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001940 | RBH | 0.0 | 2.012270 | 0.166908 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001950 | RBH | 0.0 | 2.068446 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001750 | RBH | 0.0 | 0.354753 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001880 | RBH | 0.0 | 7.171029 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0023000 | RBH | 0.3254975 | 0.838786 | 1.494297 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001870 | RBH | 0.0 | 0.328180 | 0.144230 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0024200 | RBH | 0.576243 | 0.211529 | 3.2307715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001740 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001900 | RBH | 0.0 | 13.437660 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001860 | RBH | 0.0 | 0.0 | 0.305150 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001920 | RBH | 0.0 | 0.862319 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001870 | RBH | 0.0 | 1.783762 | 0.283059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001830 | RBH | 0.452617 | 0.000000 | 0.000000 |
