Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_12g0000690 OGI:12001100 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr12:531905-535697
Gene Symbol OsFbox636, Fbox636, Os_F0774
DNA seq

ccccccttcttctccatctagccactccacatgcgccgcgccaaacgcccaccattattactaccttcccttcccttctctcgtttcagtcaacttcgccatggcctcgcctgcgcccacccaccacgccaagcgccgccgcctcgccctgcccccgcccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccacgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtcctccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccatctcccacctcgatctctccctctgcccccgcctccccgacgccgccctcgccgcgctccccgccgcgccgttcgtctccgccgtcgacctctcccgctcccgcgggttcggcgccgccggcctcgccgcgctcgtcgccgcgttccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctccagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctgggactagacctccttgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatggtacttatgccttgcctcttcatctctctgttccatttcatttactgtatttcttcttgtacctagacgacagaaagggaaaaaagaattcccttttccccttccattcgcttcttgatttcaaggtcaggtttttttgaggaaacttaatttagtggtttttttttcttgttctggtttgtgaatctgccggttctctgcacctgacatgaatattgcccacaaaataacattagcctatgatggcagaagcgctttggaaattggtctattcttgatctgcagatgctcttatctatacccaaaatgatctttgcctcaccttttcaattgtcagaacctgtagtaactagtagtacagtagtatccagattcctacttctcccgttgatttgttttatcatcaTtttttggttataggttaattatttgccctgcagtttagatcacactcatcagactaagAaaaaaatgttgtgcagatagtaaaaaaatgctttccagccatcatgaagctacaaaatctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggtaatcatcaacccctatctttttcactgtgagcattgtgttagctaaatttgaatctggttaatatccttgtttattgtcttctgctctgagtatattcagttagcttctcatgtaaagtaggtttgcaatgctaatgttgtagggatactaacatgtatatacctcgtatattgtttggtacatttcaattcaggctatatggatattgcaactgaaacaatttggactaaatcattgttagccttcaacaataagagtatcacaagttcttgtaactgagagctgaaattatgtctgtactctttcaggttcttgatatgtcaaactcttacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgtaagtagcccactgtctagttttatcacctgaacaattggacataacttgagctcagtttatctacacttttcttgtggcaggttactccttctatgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgttgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctttggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggttattccctacacattgcatatttgatttcctttccttccgtgataggtaccaagactaactaatagcctctctttcaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcaggtattagcccattctgctgtaaaagaaataatcgcaataccgtgtttccaattgtcttaataacatctcctcatcactgcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggtattactatatttcttttctggttatacaaagtaagatgctagtcggtttacttgtgtagaagaattaagtgcaaaatagttcaccattgtgttttggccatcttcattaactggtatgcagtttatttgaaagtagtgtctaataacaggtgtggtcttggcaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtgaaatgtttcaaagataaacgttgtggaaactggggcgtgttttgtggtgttgaatttatcttagagcaatatctccagtcctagagaatgagctccaaaagttttgtgccataactggctgaatagtgtattgaattactgacggtagtattgtcagaacaacatactagtactggtattttgcttgtatgccagtggaggcgagggaggttatattcttgatgtgttgtatatagcgcaggtaggaatcaacaatcaaagagagattattggggtaaagcatgtagtaagtgtggagtatgtgatatgccttgttgtgcctttttgatgcacaatttgattaatggaatggaacattgcattctcactataatttggttgttccatctcctagtgttttatgtgtagtgttatctggaatgaggtctcatagcttccttacctgaataaaggcac

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CDS seq

atggcctcgcctgcgcccacccaccacgccaagcgccgccgcctcgccctgcccccgcccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccacgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtcctccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccatctcccacctcgatctctccctctgcccccgcctccccgacgccgccctcgccgcgctccccgccgcgccgttcgtctccgccgtcgacctctcccgctcccgcgggttcggcgccgccggcctcgccgcgctcgtcgccgcgttccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctccagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctgggactagacctccttgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatgatagtaaaaaaatgctttccagccatcatgaagctacaaaatctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggttcttgatatgtcaaactcttacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgttactccttctatgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgttgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctttggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MASPAPTHHAKRRRLALPPPPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPAISHLDLSLCPRLPDAALAALPAAPFVSAVDLSRSRGFGAAGLAALVAAFPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALFGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

Function F-box/LRR-repeat protein 3 [UniProtKB/Swiss-Prot:Q8RWU5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0000690 OsNaBo_12g0000690.01 Chr12 531905 535697 + NAM
CDS seq

atggcctcgcctgcgcccacccaccacgccaagcgccgccgcctcgccctgcccccgcccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccacgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtcctccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccatctcccacctcgatctctccctctgcccccgcctccccgacgccgccctcgccgcgctccccgccgcgccgttcgtctccgccgtcgacctctcccgctcccgcgggttcggcgccgccggcctcgccgcgctcgtcgccgcgttccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctccagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctgggactagacctccttgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatgatagtaaaaaaatgctttccagccatcatgaagctacaaaatctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggttcttgatatgtcaaactcttacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgttactccttctatgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgttgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctttggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MASPAPTHHAKRRRLALPPPPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPAISHLDLSLCPRLPDAALAALPAAPFVSAVDLSRSRGFGAAGLAALVAAFPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALFGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0000690 OsNaBo_12g0000690.03 Chr12 531944 535697 + NAM
CDS seq

atgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgttgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctttggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALFGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_12g0000690 OsNaBo_12g0000690.02 Chr12 531905 535697 + NAM
CDS seq

atgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgttgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctttggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALFGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr12 533599 534310 + OsNaBo_12g0000690.02,OsNaBo_12g0000690.03 OsNaBo_12g0000690.01,OsNaBo_12g0000690.02,OsNaBo_12g0000690.03 All

Expression

Leaf Root Panicle
FPKM 0.608178 11.471702 4.794776

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0108500 SBH 0.454873 0.258719 5.275040
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g01760 SBH 0.307110 0.416818 1.355696
Nipponbare | IRGSP 1.0 | RAP-db Os12g0108500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0000500 SBH 0.355829 6.021996 4.730744
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_12g0000690 SBH 0.339220 4.866327 2.271046
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0000660 SBH 0.752831 1.293693 8.083612
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0000520 SBH 0.147491 0.256085 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_12g0000620 RBH 5.460541 36.126030 10.752232
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0007100 SBH 1.726716 13.1850955 4.9716485
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_12g0000590 RBH 0.304088 0.428182 1.745325
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0007300 SBH 2.7056305 29.833139 9.2967985
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0000510 SBH 0.064096 0.685095 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_12g0000620 RBH 0.506302 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_12g0000620 RBH 4.796548 10.967659 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0000630 SBH 1.034789 0.0 1.320744
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0000640 RBH 0.302087 4.017885 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_12G000530 RBH 0.270923 2.699148 2.063953
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0000630 RBH 0.359899 4.319939 5.591529
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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