Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_12g0000690 OGI:12001100 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr12:499260-503005
Gene Symbol OsFbox636, Fbox636, Os_F0774
DNA seq

cctcccttcttctccatctagccactccacatgcgccgcgccaaacgcccaccattattactaccttcccttcccttctctcgtttcagtcaacttcgccatggcctcgcctgcgcccacccaccacgccaagcgccgccgcctcgccctgcccccgcccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccacgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtcctccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccatctcccacctcgatctctccctctgcccccgcctccccgacgccgccctcgccgcgctccccgccgcgccgttcgtctccgccgtcgacctctcccgctcccgcgggttcggcgccgccggcctcgccgcgctcgtcgccgcgttccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctccagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctgggactagacctccttgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatggtacttatgccttgcctcttcatctctctgttccatttcatttactgtatttcttcttgtacctagacgacagaaagggaaaaaagaattcccttttccccttccattcgcttcttgatttcaaggtcaggtttttttgaggaaacttaatttagtggttttttttttcttgttctggtttgtgaatctgccggttctctgcacctgacatgaatattgcccacaaaataacattagcctatgatggcagaagcgctttggaaattggtctattcttgatctgcagatgctcttatctatacccaaaatgatctttgcctcaccttttcaattgtcagaacctgtagtaactagtagtacagtagtatccagattcctacttctcccgttgatttgttttatcatcattttttggttataggttaattatttgccctgcagtttagatcacactcatcagactaagaaaaaaatgttgtgcagatagtaaaaaaatgctttccagccatcatgaagctacaaaatctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggtaatcatcaacccctatctttttcactgtgagcattgtgttagctaaatttgaatctggttaatatccttgtttatcgtcttctgctctgagtatattcagttagcttctcatgtaaagtaggtttgcaatgctaatgttgtagggatactaacatgtatatacctcgtatattgtttggtacatttcaattcaggctatatggatattgcaactgaaacaatttggactaaatcattgttagccttcaacaataagagtatcacaagttcttgtaactgagagctgaaattatgtctgtactctttcaggttcttgatatgtcaaactcttacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgtaagtagcccactgtctagttttatcacctgaacaattggacataacttgagctcagtttatctacacttttcttgtggcaggttactccttctatgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggttattccctacacattgcatatttgatttcctttccttccgtgataggtaccaagactaactaatagcctctctttcaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcaggtattagcccattctgctgtaaaagaaataatcgcaataccgtgtttccaattgtcttaataacatctcctcatcactgcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggtattactatatttcttttctggttatacaaagtaagatgctagtcggtttacttgtgtagaagaattaagtgcaaaatagttcaccattgtgttttggccatcttcattaactggtatgcagtttatttgaaagtagtgtctaataacaggtgcggtcttggcaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtgaaatgtttcaaagataaacgttgtggaaactggggcgtgttttgtggtgttgaatttatcttagagcaatatctccagtcctagagaatgagctccaaaagttttgtgccataactggctgaatagtgtattgaattactgacggtagtattgtcagaacaacatactagtactggtattttgcttgtatgccagtggaggcgagggaggttatattcttgatgtgttgtatatagcgcaggtaggaatcaacaatcaaagagagattattggggtaaagcatgtagtaagtgtggagtatgtgatatgccttgttgtgcctttttgatgcacaatttgattaatggaatggaacattgcattcgcactataatttggttgttccatctcctagtgttttatgtgtag

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CDS seq

atggcctcgcctgcgcccacccaccacgccaagcgccgccgcctcgccctgcccccgcccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccacgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtcctccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccatctcccacctcgatctctccctctgcccccgcctccccgacgccgccctcgccgcgctccccgccgcgccgttcgtctccgccgtcgacctctcccgctcccgcgggttcggcgccgccggcctcgccgcgctcgtcgccgcgttccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctccagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctgggactagacctccttgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatgatagtaaaaaaatgctttccagccatcatgaagctacaaaatctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggttcttgatatgtcaaactcttacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgttactccttctatgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MASPAPTHHAKRRRLALPPPPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPAISHLDLSLCPRLPDAALAALPAAPFVSAVDLSRSRGFGAAGLAALVAAFPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

Function F-box/LRR-repeat protein 3 [UniProtKB/Swiss-Prot:Q8RWU5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_12g0000690 OsKeNa_12g0000690.03 Chr12 499306 502982 + NAM
CDS seq

atggcctcgcctgcgcccacccaccacgccaagcgccgccgcctcgccctgcccccgcccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccacgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtcctccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccatctcccacctcgatctctccctctgcccccgcctccccgacgccgccctcgccgcgctccccgccgcgccgttcgtctccgccgtcgacctctcccgctcccgcgggttcggcgccgccggcctcgccgcgctcgtcgccgcgttccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctccagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctgggactagacctccttgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatgatagtaaaaaaatgctttccagccatcatgaagctacaaaatctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggttcttgatatgtcaaactcttacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgttactccttctatgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MASPAPTHHAKRRRLALPPPPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPAISHLDLSLCPRLPDAALAALPAAPFVSAVDLSRSRGFGAAGLAALVAAFPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQNLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNSYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_12g0000690 OsKeNa_12g0000690.02 Chr12 499299 502598 + NAM
CDS seq

atgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggtgcggtcttggcaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVRSWQVAVEPCDVWKQQSQDLLVQ

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_12g0000690 OsKeNa_12g0000690.01 Chr12 499260 503005 + NAM
CDS seq

atgtcaagcagcttcgaaatgattcataaattgcagaaactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagacctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccatccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatatgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgcaacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgacgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MSSSFEMIHKLQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINMSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr12 502372 502539 + OsKeNa_12g0000690.02 OsKeNa_12g0000690.02,OsKeNa_12g0000690.03,OsKeNa_12g0000690.01 All
RI Chr12 500955 501666 + OsKeNa_12g0000690.01,OsKeNa_12g0000690.02 OsKeNa_12g0000690.02,OsKeNa_12g0000690.03,OsKeNa_12g0000690.01 All

Expression

Leaf Root Panicle
FPKM 0.339220 4.866327 2.271046

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_12g0108500 RBH 0.454873 0.258719 5.275040
Nipponbare | IRGSP 1.0 | MSU LOC_Os12g01760 RBH 0.307110 0.416818 1.355696
Nipponbare | IRGSP 1.0 | RAP-db Os12g0108500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_12g0000500 RBH 0.355829 6.021996 4.730744
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0000660 RBH 0.403409 6.086329 3.169692
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_12g0000660 RBH 0.752831 1.293693 8.083612
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_12g0000520 RBH 0.147491 0.256085 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0000640 SBH 7.195349 23.578585 11.132803
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0007100 SBH 1.726716 13.1850955 4.9716485
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0000630 SBH 0.036470 0.223418 1.677004
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_12G0007300 RBH 2.7056305 29.833139 9.2967985
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_12g0000510 RBH 0.064096 0.685095 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0000650 SBH 0.456231 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0000650 SBH 6.720674 20.641253 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_12g0000630 RBH 1.034789 0.0 1.320744
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0000670 SBH 0.350287 6.794578 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G000650 SBH 0.118911 1.180506 3.234627
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0000630 SBH 0.359899 4.319939 5.591529
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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