Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_11g0000670 OGI:12001100 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr11:544914-548667
Gene Symbol OsFbox563, Os_F0773, OsFbox636, Fbox636, Os_F0774
DNA seq

atcgaggcgccgccggggcactctcgtcatctcatctcccccttgtttcgtttcttcctcccttcttctccttctccacatgcgccgcgccaaacgcccaccattattactaccttcccttcccttcttcttgttgcagtcaacctcgccatggcctcgcctatgccaacgcctacccaccgcgtcaagcgccgccgcctcgacctctccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccccgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtactccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccctctcccgcctcgatctctccctctgcccgcgcctccccgacgccgccctcgccgcgctccccgccgcgccgtccgtctccgccgtcgacctctcccgctcccgggggttcggcgccgccggcctcgccgcgctcgtcgccgcgtgccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctgcagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctcggactagacctcctcgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatggtacttgtgccttgcctcttcatctctctgttccatttcatttactgtatttcttattgtacctagacgacagaaagggaaaaaagaactcccttttccccttccattcgcttcttgatttcaaggtcaggttttttttttaggaaacttaatttagtggTtttttttttcttgttcttgtttgtgaatctgccggttctctgcacctgacatgaatattgcccacaaaataacattagcctatgatgacagaagcgctttggaaattggactattcttgatctgcagatgctcttatctatacccaaaatgatatttgcctcaccttttcaattgtcagaaccagtagtaactacttctcccgttgatttgttttatcatcattttttggttataggttaattatttgccctgcagtttagatcacactcatcagactaagaaaaaattgttgtgcagattgtaaaaaaatgctttccagccatcatgaagctacaaagtctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggtaatcatcaacccctatctttttcactgtgagcattgtgctagctaaatttaaatctgattaatatccttgtttatcgtcttctgctctgagtatattcagttagcttctcatgtaaagtaggtttgcaatgctaatgttgtagggatactaacatgtatatacctcgtatattgtttggtacatttcaattcaggctatatggatattgcaactgaaacaatttggactaaatcattgttagccttcaacaataagagtatcacaatttctggtaactgagagctgaaattatatctgtactctttcaggttcttgatatgtcaaattattacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgtaagtagcccactgtctagttttatcacctgaacaattggacataacttgagctcagtttatctacacttttcttgtggcaggttactccttctatgtcaagcagcttcgaaatgattcataaattgcagacactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagatctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccctccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggttattccctacacattgcatatttgatttcctttccttccgtgataggagccaagactaactaatagcctctctttcaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatttgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgccacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcaggtattagcccattctgctgtaaaagaaataatcgcaataccgtgcttccaattgtcttaataacatctcctcatcactgcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggtattctactatatttcttttctggttatacaaagtaagatgctagtcggtttacttgtgtagaagaattgaagtgcaaaatagttcacccttgcgttttggccatgttcattaactggtatgcagtttattagaaagcagtgtctaataacaggtgtggtcttggcaggttgcggtagaaccgtgtgatgtatggaagcagcagtcgcaggatttgcttgtacagtgaaatgtttcaaagataaacgttgtggaaactggggcgtgttttgtggtgttgaatttatctagagcaatatctccagtcctagagaatgagctccaaaagttttgtgccataactggctgaatagtgtattgaattgctgacggtagtattgtcagaacaacatactagtactggtattttgcttgtatgccagtggaggcgagggaggttatattcttgctgtgttgtatatagcgcaggtaggaatcaacaatcaaagagagatcattggggtaaagcatgttgtaagtagtgcggagtatgtgatatgccttgctgtgcctttttgatgcacaatttgattaatggaatggaacattgcattctcactataatttggttgttcc

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CDS seq

atggcctcgcctatgccaacgcctacccaccgcgtcaagcgccgccgcctcgacctctccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccccgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtactccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccctctcccgcctcgatctctccctctgcccgcgcctccccgacgccgccctcgccgcgctccccgccgcgccgtccgtctccgccgtcgacctctcccgctcccgggggttcggcgccgccggcctcgccgcgctcgtcgccgcgtgccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctgcagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctcggactagacctcctcgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatgattgtaaaaaaatgctttccagccatcatgaagctacaaagtctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggttcttgatatgtcaaattattacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgttactccttctatgtcaagcagcttcgaaatgattcataaattgcagacactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagatctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccctccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatttgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgccacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgatgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MASPMPTPTHRVKRRRLDLSPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPALSRLDLSLCPRLPDAALAALPAAPSVSAVDLSRSRGFGAAGLAALVAACPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQSLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNYYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

Function F-box/LRR-repeat protein 3 [UniProtKB/Swiss-Prot:Q8RWU5]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0000670 OsLaMu_11g0000670.02 Chr11 544914 548651 + NAM
CDS seq

atgtcaagcagcttcgaaatgattcataaattgcagacactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagatctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccctccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatttgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgccacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgatgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MSSSFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0000670 OsLaMu_11g0000670.03 Chr11 545002 548651 + NAM
CDS seq

atgtcaagcagcttcgaaatgattcataaattgcagacactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagatctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccctccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatttgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgccacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgatgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MSSSFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0000670 OsLaMu_11g0000670.01 Chr11 544914 548667 + NAM
CDS seq

atggcctcgcctatgccaacgcctacccaccgcgtcaagcgccgccgcctcgacctctccccgcccccgcacctcaacgacctcgccgacgagctcctcttcctcatcctcgaccgtgccgccgcccatgacccccgcgccctcaagtccttctccctcgtctcccgcgcctgccacgccgccgagtcgcgccaccgccgcgtactccgccccttccgccccgacctcctccccgccgcgctcgcccgctaccccgccctctcccgcctcgatctctccctctgcccgcgcctccccgacgccgccctcgccgcgctccccgccgcgccgtccgtctccgccgtcgacctctcccgctcccgggggttcggcgccgccggcctcgccgcgctcgtcgccgcgtgccccaatctcacggacctcgacctctccaatggcctcgacctcggggatgccgcggcggcggaggtggccaaggcgcgccgcctgcagaggctctcgctgtcgcgatgcaagcgcatcactgacatggggctcggatgcatcgccgtcggatgccccgacctgcgcgagctctcgctcaagtggtgcatcggggtcactcatctcggactagacctcctcgccctcaagtgcaacaagctcaacatcctggatctctcctacaccatgattgtaaaaaaatgctttccagccatcatgaagctacaaagtctacaagtgttactactggtgggatgtaatggaattgatgatgatgcccttactagtcttgatcaagaatgcagcaaatcactacaggttcttgatatgtcaaattattacaatgtcactcatgtcggtgttctgtccattgtgaaggcaatgccgaatctgttggaactcaatctatcatactgctctcctgttactccttctatgtcaagcagcttcgaaatgattcataaattgcagacactgaagctggatggttgccaattcatggatgatggattaaaatccattgggaaatcctgtgtttctttgagggagttaagtctgagcaaatgttctggagtgacagacacagatctttcttttgtcgtgccaagactgaaaaatttgctgaagctggatgttacttgttgtcgcaaaatcactgatgtttcattagctgccatcacaacctcatgcccctccctcatctctctgagaatggagtcctgtagccttgtttccagcaaaggactacagctgattggaaggcgctgcactcacttggaggaattggatcttactgacactgatttggatgatgaaggtttgaaagctctctctggatgcagcaaactttcaagcctaaaaattggcatatgcttgaggataactgatgagggccttagacacgttagcaagtcctgtccagatctccgagatatcgatttgtacaggtctggggcgatcagtgatgaaggggttactcatatagctcaaggatgcccaatgttagagtctatcaatttgtcctactgcacaaaattaacagactgttcactgagatcactttcaaaatgcataaagctgaacacattggagattcgtggctgccccatggtttcatctgctggtctctcggaaattgccacaggatgcaggctactttctaagcttgatatcaagaaatgctttgagatcaatgacatgggaatgattttcctttcccaattctctcacaacctccggcagataaacttgtcatattgttcggtcaccgacattgggcttatatccctttcaagcatatgtggcttgcagaacatgaccattgtgcatttagcgggtgttacgcctaatggactgatagctgctcttatggtctgtggtttgagaaaagtgaagcttcatgaagcattcaaatccatggtgccatcacatatgctcaaagttgttgaagcccgtggttgtcttttccagtggattaataaaccctaccaggttgcggtagaaccgtgtgatgtatggaagcagcagtcgcaggatttgcttgtacagtga

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Protein seq

MASPMPTPTHRVKRRRLDLSPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPALSRLDLSLCPRLPDAALAALPAAPSVSAVDLSRSRGFGAAGLAALVAACPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQSLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNYYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr11 546635 547346 + OsLaMu_11g0000670.02,OsLaMu_11g0000670.03 OsLaMu_11g0000670.03,OsLaMu_11g0000670.02,OsLaMu_11g0000670.01 All

Expression

Leaf Root Panicle
FPKM 0.350287 6.794578 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0108932 RBH 0.849601 0.390699 3.394743
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g01780 RBH 0.654124 0.311170 0.874767
Nipponbare | IRGSP 1.0 | RAP-db Os11g0108932 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0000630 RBH 0.000000 2.864494 5.172485
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0000660 RBH 0.403409 6.086329 3.169692
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0000640 RBH 0.915245 1.268180 12.714535
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0000640 RBH 0.054087 0.205511 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0000640 RBH 7.195349 23.578585 11.132803
Minghui 63 | MH63RS3 | HZAU OsMH63_12G0007100 SBH 1.726716 13.1850955 4.9716485
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0000630 RBH 0.036470 0.223418 1.677004
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0009100 RBH 3.2619515 27.665473 7.7993385
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0000510 RBH 0.031227 0.456338 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0000650 RBH 0.456231 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0000650 RBH 6.720674 20.641253 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0000660 RBH 0.199851 0.0 0.908922
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_12g0000640 RBH 0.302087 4.017885 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G000650 RBH 0.118911 1.180506 3.234627
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0000630 RBH 0.359899 4.319939 5.591529
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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