Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g01780 | OGI:12001100 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:417564-421226 | ||||||||
| Gene Symbol | OsFbox563, Os_F0773 | ||||||||||
| DNA seq | AAACGCCCACCATTATTACTACCTTCCCTTCCCTTCTTCTTGTTGCAGTCAACCTCGCCATGGCCTCGCCTATGCCAACGCCTACCCACCGCGTCAAGCGCCGCCGCCTCGACCTCTCCCCGCCCCCGCACCTCAACGACCTCGCCGACGAGCTCCTCTTCCTCATCCTCGACCGTGCCGCCGCCCATGACCCCCGCGCCCTCAAGTCCTTCTCCCTCGTCTCCCGCGCCTGCCACGCCGCCGAGTCGCGCCACCGCCGCGTACTCCGCCCCTTCCGCCCCGACCTCCTCCCCGCCGCGCTCGCCCGCTACCCCGCCCTCTCCCGCCTCGATCTCTCCCTCTGCCCGCGCCTCCCCGACGCCGCCCTCGCCGCGCTCCCCGCCGCGCCGTCCGTCTCCGCCGTCGACCTCTCCCGCTCCCGGGGGTTCGGCGCCGCCGGCCTCGCCGCGCTCGTCGCCGCGTGCCCCAATCTCACGGACCTCGACCTCTCCAATGGCCTCGACCTCGGGGATGCCGCGGCGGCGGAGGTGGCCAAGGCGCGCCGCCTGCAGAGGCTCTCGCTGTCGCGATGCAAGCGCATCACTGACATGGGGCTCGGATGCATCGCCGTCGGATGCCCCGACCTGCGCGAGCTCTCGCTCAAGTGGTGCATCGGGGTCACTCATCTCGGACTAGACCTCCTCGCCCTCAAGTGCAACAAGCTCAACATCCTGGATCTCTCCTACACCATGGTACTTGTGCCTTGCCTCTTCATCTCTCTGTTCCATTTCATTTACTGTATTTCTTATTGTACCTAGACGACAGAAAGGGAAAAAAGAACTCCCTTTTCCCCTTCCATTCGCTTCTTGATTTCAAGGTCAGGTTTTTTTTTTAGGAAACTTAATTTAGTGGTTTTTTTTTTCTTGTTCTTGTTTGTGAATCTGCCGGTTCTCTGCACCTGACATGAATATTGCCCACAAAATAACATTAGCCTATGATGACAGAAGCGCTTTGGAAATTGGACTATTCTTGATCTGCAGATGCTCTTATCTATACCCAAAATGATATTTGCCTCACCTTTTCAATTGTCAGAACCAGTAGTAACTACTTCTCCCGTTGATTTGTTTTATCATCATTTTTTGGTTATAGGTTAATTATTTGCCCTGCAGTTTAGATCACACTCATCAGACTAAGAAAAAATTGTTGTGCAGATTGTAAAAAAATGCTTTCCAGCCATCATGAAGCTACAAAGTCTACAAGTGTTACTACTGGTGGGATGTAATGGAATTGATGATGATGCCCTTACTAGTCTTGATCAAGAATGCAGCAAATCACTACAGGTAATCATCAACCCCTATCTTTTTCACTGTGAGCATTGTGCTAGCTAAATTTAAATCTGATTAATATCCTTGTTTATCGTCTTCTGCTCTGAGTATATTCAGTTAGCTTCTCATGTAAAGTAGGTTTGCAATGCTAATGTTGTAGGGATACTAACATGTATATACCTCGTATATTGTTTGGTACATTTCAATTCAGGCTATATGGATATTGCAACTGAAACAATTTGGACTAAATCATTGTTAGCCTTCAACAATAAGAGTATCACAATTTCTGGTAACTGAGAGCTGAAATTATATCTGTACTCTTTCAGGTTCTTGATATGTCAAATTATTACAATGTCACTCATGTCGGTGTTCTGTCCATTGTGAAGGCAATGCCGAATCTGTTGGAACTCAATCTATCATACTGCTCTCCTGTAAGTAGCCCACTGTCTAGTTTTATCACCTGAACAATTGGACATAACTTGAGCTCAGTTTATCTACACTTTTCTTGTGGCAGGTTACTCCTTCTATGTCAAGCAGCTTCGAAATGATTCATAAATTGCAGACACTGAAGCTGGATGGTTGCCAATTCATGGATGATGGATTAAAATCCATTGGGAAATCCTGTGTTTCTTTGAGGGAGTTAAGTCTGAGCAAATGTTCTGGAGTGACAGACACAGATCTTTCTTTTGTCGTGCCAAGACTGAAAAATTTGCTGAAGCTGGATGTTACTTGTTGTCGCAAAATCACTGATGTTTCATTAGCTGCCATCACAACCTCATGCCCCTCCCTCATCTCTCTGAGAATGGAGTCCTGTAGCCTTGTTTCCAGCAAAGGACTACAGCTGATTGGAAGGCGCTGCACTCACTTGGAGGAATTGGATCTTACTGACACTGATTTGGATGATGAAGGTTTGAAAGCTCTCTCTGGATGCAGCAAACTTTCAAGCCTAAAAATTGGCATATGCTTGAGGATAACTGATGAGGGCCTTAGACACGTTAGCAAGTCCTGTCCAGATCTCCGAGATATCGATTTGTACAGGTTATTCCCTACACATTGCATATTTGATTTCCTTTCCTTCCGTGATAGGAGCCAAGACTAACTAATAGCCTCTCTTTCAGGTCTGGGGCGATCAGTGATGAAGGGGTTACTCATATAGCTCAAGGATGCCCAATGTTAGAGTCTATCAATTTGTCCTACTGCACAAAATTAACAGACTGTTCACTGAGATCACTTTCAAAATGCATAAAGCTGAACACATTGGAGATTCGTGGCTGCCCCATGGTTTCATCTGCTGGTCTCTCGGAAATTGCCACAGGATGCAGGCTACTTTCTAAGCTTGATATCAAGAAATGCTTTGAGATCAATGACATGGGAATGATTTTCCTTTCCCAATTCTCTCACAACCTCCGGCAGGTATTAGCCCATTCTGCTGTAAAAGAAATAATCGCAATACCGTGCTTCCAATTGTCTTAATAACATCTCCTCATCACTGCAGATAAACTTGTCATATTGTTCGGTCACCGACATTGGGCTTATATCCCTTTCAAGCATATGTGGCTTGCAGAACATGACCATTGTGCATTTAGCGGGTGTTACGCCTAATGGACTGATAGCTGCTCTTATGGTCTGTGGTTTGAGAAAAGTGAAGCTTCATGAAGCATTCAAATCCATGGTGCCATCACATATGCTCAAAGTTGTTGAAGCCCGTGGTTGTCTTTTCCAGTGGATTAATAAACCCTACCAGGTATTCTACTATATTTCTTTTCTGGTTATACAAAGTAAGATGCTAGTCGGTTTACTTGTGTAGAAGAATTGAAGTGCAAAATAGTTCACCCTTGCGTTTTGGCCATGTTCATTAACTGGTATGCAGTTTATTAGAAAGCAGTGTCTAATAACAGGTGTGGTCTTGGCAGGTTGCGGTAGAACCGTGTGATGTATGGAAGCAGCAGTCGCAGGATTTGCTTGTACAGTGAAATGTTTCAAAGATAAACGTTGTGGAAACTGGGGCGTGTTTTGTGGTGTTGAATTTATCTAGAGCAATATCTCCAGTCCTAGAGAATGAGCTCCAAAAGTTTTGTGCCATAACTGGCTGAATAGTGTATTGAATTGCTGACGGTAGTATTGTCAGAACAACATACTAGTACTGGTATTTTGCTTGTATGCCAGTGGAGGCGAGGGAGGTTATATTCTTGCTGTGTTGTATATAGCGCAGGTAGGAATCAACAATCAAAGAGAGATCATTGGGGTAAAGCATGTTGTAAGTAGTGCGGAGTATGTGATATGCCTTGCTGTGCCTTTTTGATGCACAATTTGATTAATGGAATGGAACATTGCATTCTCACTATAATTTGGTTGTTCC
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| CDS seq | ATGGCCTCGCCTATGCCAACGCCTACCCACCGCGTCAAGCGCCGCCGCCTCGACCTCTCCCCGCCCCCGCACCTCAACGACCTCGCCGACGAGCTCCTCTTCCTCATCCTCGACCGTGCCGCCGCCCATGACCCCCGCGCCCTCAAGTCCTTCTCCCTCGTCTCCCGCGCCTGCCACGCCGCCGAGTCGCGCCACCGCCGCGTACTCCGCCCCTTCCGCCCCGACCTCCTCCCCGCCGCGCTCGCCCGCTACCCCGCCCTCTCCCGCCTCGATCTCTCCCTCTGCCCGCGCCTCCCCGACGCCGCCCTCGCCGCGCTCCCCGCCGCGCCGTCCGTCTCCGCCGTCGACCTCTCCCGCTCCCGGGGGTTCGGCGCCGCCGGCCTCGCCGCGCTCGTCGCCGCGTGCCCCAATCTCACGGACCTCGACCTCTCCAATGGCCTCGACCTCGGGGATGCCGCGGCGGCGGAGGTGGCCAAGGCGCGCCGCCTGCAGAGGCTCTCGCTGTCGCGATGCAAGCGCATCACTGACATGGGGCTCGGATGCATCGCCGTCGGATGCCCCGACCTGCGCGAGCTCTCGCTCAAGTGGTGCATCGGGGTCACTCATCTCGGACTAGACCTCCTCGCCCTCAAGTGCAACAAGCTCAACATCCTGGATCTCTCCTACACCATGATTGTAAAAAAATGCTTTCCAGCCATCATGAAGCTACAAAGTCTACAAGTGTTACTACTGGTGGGATGTAATGGAATTGATGATGATGCCCTTACTAGTCTTGATCAAGAATGCAGCAAATCACTACAGGTTCTTGATATGTCAAATTATTACAATGTCACTCATGTCGGTGTTCTGTCCATTGTGAAGGCAATGCCGAATCTGTTGGAACTCAATCTATCATACTGCTCTCCTGTTACTCCTTCTATGTCAAGCAGCTTCGAAATGATTCATAAATTGCAGACACTGAAGCTGGATGGTTGCCAATTCATGGATGATGGATTAAAATCCATTGGGAAATCCTGTGTTTCTTTGAGGGAGTTAAGTCTGAGCAAATGTTCTGGAGTGACAGACACAGATCTTTCTTTTGTCGTGCCAAGACTGAAAAATTTGCTGAAGCTGGATGTTACTTGTTGTCGCAAAATCACTGATGTTTCATTAGCTGCCATCACAACCTCATGCCCCTCCCTCATCTCTCTGAGAATGGAGTCCTGTAGCCTTGTTTCCAGCAAAGGACTACAGCTGATTGGAAGGCGCTGCACTCACTTGGAGGAATTGGATCTTACTGACACTGATTTGGATGATGAAGGTTTGAAAGCTCTCTCTGGATGCAGCAAACTTTCAAGCCTAAAAATTGGCATATGCTTGAGGATAACTGATGAGGGCCTTAGACACGTTAGCAAGTCCTGTCCAGATCTCCGAGATATCGATTTGTACAGGTCTGGGGCGATCAGTGATGAAGGGGTTACTCATATAGCTCAAGGATGCCCAATGTTAGAGTCTATCAATTTGTCCTACTGCACAAAATTAACAGACTGTTCACTGAGATCACTTTCAAAATGCATAAAGCTGAACACATTGGAGATTCGTGGCTGCCCCATGGTTTCATCTGCTGGTCTCTCGGAAATTGCCACAGGATGCAGGCTACTTTCTAAGCTTGATATCAAGAAATGCTTTGAGATCAATGACATGGGAATGATTTTCCTTTCCCAATTCTCTCACAACCTCCGGCAGATAAACTTGTCATATTGTTCGGTCACCGACATTGGGCTTATATCCCTTTCAAGCATATGTGGCTTGCAGAACATGACCATTGTGCATTTAGCGGGTGTTACGCCTAATGGACTGATAGCTGCTCTTATGGTCTGTGGTTTGAGAAAAGTGAAGCTTCATGAAGCATTCAAATCCATGGTGCCATCACATATGCTCAAAGTTGTTGAAGCCCGTGGTTGTCTTTTCCAGTGGATTAATAAACCCTACCAGGTTGCGGTAGAACCGTGTGATGTATGGAAGCAGCAGTCGCAGGATTTGCTTGTACAGTGA
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| Protein seq | MASPMPTPTHRVKRRRLDLSPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPALSRLDLSLCPRLPDAALAALPAAPSVSAVDLSRSRGFGAAGLAALVAACPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQSLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNYYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ |
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| Function | F-box/LRR-repeat protein 3 [UniProtKB/Swiss-Prot:Q8RWU5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g01780 | LOC_Os11g01780.1 | Chr11 | 417564 | 421226 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCTCGCCTATGCCAACGCCTACCCACCGCGTCAAGCGCCGCCGCCTCGACCTCTCCCCGCCCCCGCACCTCAACGACCTCGCCGACGAGCTCCTCTTCCTCATCCTCGACCGTGCCGCCGCCCATGACCCCCGCGCCCTCAAGTCCTTCTCCCTCGTCTCCCGCGCCTGCCACGCCGCCGAGTCGCGCCACCGCCGCGTACTCCGCCCCTTCCGCCCCGACCTCCTCCCCGCCGCGCTCGCCCGCTACCCCGCCCTCTCCCGCCTCGATCTCTCCCTCTGCCCGCGCCTCCCCGACGCCGCCCTCGCCGCGCTCCCCGCCGCGCCGTCCGTCTCCGCCGTCGACCTCTCCCGCTCCCGGGGGTTCGGCGCCGCCGGCCTCGCCGCGCTCGTCGCCGCGTGCCCCAATCTCACGGACCTCGACCTCTCCAATGGCCTCGACCTCGGGGATGCCGCGGCGGCGGAGGTGGCCAAGGCGCGCCGCCTGCAGAGGCTCTCGCTGTCGCGATGCAAGCGCATCACTGACATGGGGCTCGGATGCATCGCCGTCGGATGCCCCGACCTGCGCGAGCTCTCGCTCAAGTGGTGCATCGGGGTCACTCATCTCGGACTAGACCTCCTCGCCCTCAAGTGCAACAAGCTCAACATCCTGGATCTCTCCTACACCATGATTGTAAAAAAATGCTTTCCAGCCATCATGAAGCTACAAAGTCTACAAGTGTTACTACTGGTGGGATGTAATGGAATTGATGATGATGCCCTTACTAGTCTTGATCAAGAATGCAGCAAATCACTACAGGTTCTTGATATGTCAAATTATTACAATGTCACTCATGTCGGTGTTCTGTCCATTGTGAAGGCAATGCCGAATCTGTTGGAACTCAATCTATCATACTGCTCTCCTGTTACTCCTTCTATGTCAAGCAGCTTCGAAATGATTCATAAATTGCAGACACTGAAGCTGGATGGTTGCCAATTCATGGATGATGGATTAAAATCCATTGGGAAATCCTGTGTTTCTTTGAGGGAGTTAAGTCTGAGCAAATGTTCTGGAGTGACAGACACAGATCTTTCTTTTGTCGTGCCAAGACTGAAAAATTTGCTGAAGCTGGATGTTACTTGTTGTCGCAAAATCACTGATGTTTCATTAGCTGCCATCACAACCTCATGCCCCTCCCTCATCTCTCTGAGAATGGAGTCCTGTAGCCTTGTTTCCAGCAAAGGACTACAGCTGATTGGAAGGCGCTGCACTCACTTGGAGGAATTGGATCTTACTGACACTGATTTGGATGATGAAGGTTTGAAAGCTCTCTCTGGATGCAGCAAACTTTCAAGCCTAAAAATTGGCATATGCTTGAGGATAACTGATGAGGGCCTTAGACACGTTAGCAAGTCCTGTCCAGATCTCCGAGATATCGATTTGTACAGGTCTGGGGCGATCAGTGATGAAGGGGTTACTCATATAGCTCAAGGATGCCCAATGTTAGAGTCTATCAATTTGTCCTACTGCACAAAATTAACAGACTGTTCACTGAGATCACTTTCAAAATGCATAAAGCTGAACACATTGGAGATTCGTGGCTGCCCCATGGTTTCATCTGCTGGTCTCTCGGAAATTGCCACAGGATGCAGGCTACTTTCTAAGCTTGATATCAAGAAATGCTTTGAGATCAATGACATGGGAATGATTTTCCTTTCCCAATTCTCTCACAACCTCCGGCAGATAAACTTGTCATATTGTTCGGTCACCGACATTGGGCTTATATCCCTTTCAAGCATATGTGGCTTGCAGAACATGACCATTGTGCATTTAGCGGGTGTTACGCCTAATGGACTGATAGCTGCTCTTATGGTCTGTGGTTTGAGAAAAGTGAAGCTTCATGAAGCATTCAAATCCATGGTGCCATCACATATGCTCAAAGTTGTTGAAGCCCGTGGTTGTCTTTTCCAGTGGATTAATAAACCCTACCAGGTTGCGGTAGAACCGTGTGATGTATGGAAGCAGCAGTCGCAGGATTTGCTTGTACAGTGA
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| Protein seq | MASPMPTPTHRVKRRRLDLSPPPHLNDLADELLFLILDRAAAHDPRALKSFSLVSRACHAAESRHRRVLRPFRPDLLPAALARYPALSRLDLSLCPRLPDAALAALPAAPSVSAVDLSRSRGFGAAGLAALVAACPNLTDLDLSNGLDLGDAAAAEVAKARRLQRLSLSRCKRITDMGLGCIAVGCPDLRELSLKWCIGVTHLGLDLLALKCNKLNILDLSYTMIVKKCFPAIMKLQSLQVLLLVGCNGIDDDALTSLDQECSKSLQVLDMSNYYNVTHVGVLSIVKAMPNLLELNLSYCSPVTPSMSSSFEMIHKLQTLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLLKLDVTCCRKITDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLDDEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRDIDLYRSGAISDEGVTHIAQGCPMLESINLSYCTKLTDCSLRSLSKCIKLNTLEIRGCPMVSSAGLSEIATGCRLLSKLDIKKCFEINDMGMIFLSQFSHNLRQINLSYCSVTDIGLISLSSICGLQNMTIVHLAGVTPNGLIAALMVCGLRKVKLHEAFKSMVPSHMLKVVEARGCLFQWINKPYQVAVEPCDVWKQQSQDLLVQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.654124 | 0.311170 | 0.874767 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0108932 | RBH | 0.849601 | 0.390699 | 3.394743 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01760 | RBH | 0.307110 | 0.416818 | 1.355696 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0108932 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000630 | RBH | 0.000000 | 2.864494 | 5.172485 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000660 | RBH | 0.403409 | 6.086329 | 3.169692 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000640 | RBH | 0.915245 | 1.268180 | 12.714535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000640 | RBH | 0.054087 | 0.205511 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000640 | RBH | 7.195349 | 23.578585 | 11.132803 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0007100 | SBH | 1.726716 | 13.1850955 | 4.9716485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000630 | RBH | 0.036470 | 0.223418 | 1.677004 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0009100 | RBH | 3.2619515 | 27.665473 | 7.7993385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000510 | RBH | 0.031227 | 0.456338 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000650 | RBH | 0.456231 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000650 | RBH | 6.720674 | 20.641253 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000660 | RBH | 0.199851 | 0.0 | 0.908922 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000670 | RBH | 0.350287 | 6.794578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000650 | RBH | 0.118911 | 1.180506 | 3.234627 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000630 | RBH | 0.359899 | 4.319939 | 5.591529 |
