Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0000250 | OGI:11000380 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:205702-213103 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagttggagttggagttggaagatgaagaggaggtggaagatgaggagttggccgagctgataacggcgcgagacttccgtgtcagctgggaacatcggtttacccctcgctattccttcaacgacaccagtaagtaataaatcctcctccgccccgtcgttttattctgcttcagtttctttctttacttcaacgcaatcaagattatttctgcgaatctatctatcatgtttcgtatcaccattatatactggagtatataccactatctatttgtgctccaattctggttgttccaagtgtcttgttttattttgggttaagagattgccaggctaaatacctgtgtttgtgtgtcctcaactatatatgcaacacatttagcatgtgaaacaagtgctaggttttcctaattacactctataaaccatcacagtacaaatcctgttaatcacaacaggatactagaaagattaaatttgaaccagatccggtagattatctgacgtggtgccaactaattatgtttcatatatatattgggccgcaaaagcatgttaaataatctgagccaatttgtcttttttttcccttcatctagcacaatgaattctgacagaattaaagtggaatatcaattagttgctgattccctacttattggagcaataatccctaattttgtatgtttgtttatcttcttttttttttcaaagtagcaggcaggagatctgctagctaaatacattagaagaagcaacaaatagagtctagtttagtacatactaaataggatatctacagcgccaagaatagcaacttgcatatcaaaatccgcattagagggtatcagcactaaacgctaagggtagctcgtttacgtcttgtatcaccaagaaaaccaccttgttcttgggttggtcctggaagaccctcatgtttctttcaagccggatattccaccacgtaacaagcaaagctcccaatactcccttttctgttttcacatggtgtcattgcacttgacttgttccaccaatctgatagacaagtgtaggttgagttcattgctgtgatctgtagtttttagcgaatcatttcctacactttggtcgtgaaggaatattccttagcaagatgattggtgtcctcgaaaaagctttagtgcagagagtacaaatctcattacatggccaatgtcttttaagcaaatttttggttgctagtaccttgtggtgtaacaatagccaaccaaataattggtgctttggttcgttgtttgctttccagaggctggtaaaatttgagtatgacacacttccagtgaattgtgcaagatacgcgctttttgccatatatgatgtcattttttatccctggctgcagtttaaccccagctaatagatctgcaatccaaactagttcattgatttcttcaattgttgttaggggccttagcaggaaatctgttgtcagatatttcaactagaatagagttgtttgttctctttgctagtttgaacagacctggcaccagatccttttttctcccattctgaatccaagtaaatttcataaaactacaggtattttgcacaatttatcacaaaactacatatttaagagcttgtttcacaaaactacagatttaatgtctctgtttatcacaaaactacaggtactttgtataatctatcacaaaactatatatttaagaacttgtttcacaaaactatagatttagtgtattcgtttatcacagaactacacatttagtgtcttcatttatcacaaaactacggatttagtgtctccattattacaaaactacatattttgacaatgctaatacctatagttttgtgataatgaagacactaaacttgtagttttgtgataaatgaatatattaaatctgtagttttgtgaaataaattcttaaatatgtagttctcttaaatagatcatgcaaagtatatgtggttttatgaaatttactcatccaattatcgttccagaaggtagctttactcccgtcacccaacgtgatggtagttgccgccgcaaaaggttctttgttgattgtatcacaaggaacctccatttggcgaagggccctggcgaactcctgcaactccaaaaatgggtccacccaaatttcttggtttggctggcatacagtcgcccaatttaccaaactgtatccaggggtgatattttctgggtcttaccctttccacaaaaaggctctcctaattctgtcaattttcttgatcaaccatttttgtacgtagaactgtgagatggtatgttgggattgagctcagagcagtcttgatatgttgtttatcttactcattctcatcaaggttaatgtctagtactccatatatgtgcttatccacattgtcacatcaatcatttaactaacacttggatttttgagtcaaaaataggacacaataatagctaagagcagcatccacaatgctattatttgataataaatattactgctacttgactgcagcaaccgtatgtcccatgcgctatacggagggacctatcccaagatatgcttgctgtggtgataccttgcagatcttctctctccaagtgaaagaagcaaaaggtggtcttgactggccgctgcatgtgtatggcttggttgccaccagggactctgtagatcaaaagcgcaaccttcttttcaggtgcacaagggataattgtcaaattctcactccacaggtatctatcttgtaatttccttatacctttattgttttctcatttttcttgcagcttgaagtgctcaacctatcatactagtagattactactgttctgtacacttgtttgtataaatatgttgtctttttggagttattagtgcattcataggctggctgcacctaaactgtcaattgaaggcatgtttgcaattttttttccttaccactcttttttcacataattcattggtaaaaactaaaaactgaggatttgtttagttcccaaatttttttttcccaaaaacgtcacatcgaatctttggatatatgcatggagcattaaatatagataaaaaaactaattgcacggtttgcacggaaatcgcgagacgaatcttgtgagcctaattagtccatgattagccataagtgctacagtaacccacatgtgcttatgacggattaattaggcttaataaattcgtctcgcggtttctaggcgagttatgaaattagttttgtcattcgtgtccgaaccccttccgacatccggtcaaacgtccaatatgacacctaaaaattttcttttcgcgaactaaacacactgtgagttgatagaattggcaccactatgacctatacctatactccttttgaaataatccactcgtggtgttggcattgaatctgctgtgtcaactcttcctaccacagttttctataaatcaacctgtgatgatagttaatgttatcaacagccaaacatagcagtattgccacatgtataaccaagatgagcactcactgttgcaaataaatgaatagcatattgcatgcaaaacataaattaggtttgtttattttaggcaatattatggcatactttcttttattggtagcaaagctattgcatttaccttgtctatggaaatagaagttttgtgatggaccgtctttaacatgggctcgtaggaaataactgcatggattggttgcatactggatccttattatacggagggaaccaagttttagtaataatcaattggttgtgatgcctgcaggattcacacctgctgttaacaggcccatctcgtgcagttgtggtaattgatccagtaacgtttgaagttgaactaaaggtaaaaggaaaaacagaggctgaggataaggtgttgagcctaagggtctttatgcaccacactgtttacccagatacaaagtatactcgcatgctccgcagatgtttgtccagcaaacatggggagcttgagttgacatgtgctggacttgatagagcagttgaggccacaatggtgagtatccaagttagagaggggtcatggccagatcatatacgaggggcagcgtagagggaggggattttgtgctgcttgattctggagatggaagaatgcctattaacagctacgatggtggcattgagctttcaaggcgtgtggtttgtgtggaattgaggggagatgtggtggcaatggcatcgtcgcacaacctcaatgtcgtcgttgcaagaggcagtgctgttttcaagcctcgccgtgccgggagtactagtcttgtatgggaccttgggttttgtaaggtggaagctactgtttgttggtcgctccacgcaaccttgaggcaaatgctctcgggcatgccttgatccatactaatcactttagcttgttttgatttttgagttaacgtacagctcggctgcatatgcttgcgtaattgtgtttttggcgtcatggtctgctcaaccccagccgtgttcaggactagtaccatgtaacatatatatgcttcaatgtcagaatccaacctttttaactttctgctgttttcttaatgaaggttagctgcctattcccttcactgaacgtacatgaagcgcagcagcagtttattaaccaaacacgtatagttagccagcagctacgttgaatcaaacaacagatcgaagaggaatcatccgttccgttccaccgccaaatccaatgtcatccaatcacttcaatttgcatctctcacatcaccatctcttacccttattcagaccgcaacacccttacatatatagcgtcaagtaatggaagcaaccacatacatacatcgttgcatacacatgcaggcctgcaggctgcagctaatccaatcccgaccaagaagcaaccggttcaattcattaacaccaattaacatatggatggatgcaatcagcaagatgcaaaatgaacaagatattttccccacaagcatctgggactggaagggacatgacatgcccacccttgttatcgtcaaatatcaatcttgacattatatcaagccttcatcttcaagttccactatttcgcaaaggaaaaaatatgaattacccccctaaatcggccgaatttccccccgaacccaaaaatcagacatcactcaccctaaatttttaataccgaacgaattacccccctcaacccaatccggagcagttttgtcctacgtggtggtgcatacgtggcaacccagtcagcatttctttttttaaacacggtggggcctgcttgtcattctctcacctcattttcctcttcccctcctacccctctctctctctctcgtgtcgtcaggcgagtggtgggcggtggctcgtcgtcaggagcggccgtgcggccggtcggcgcacacggcggcgggcgtgcgagggcgggcggtgggcgcgcgagactgggaggtgggcggccgcgcacggcggcgcgcgagcgcgggcggcgggcgcgcgaggacaagcgacgagtgcggctggttggctccggtcgacaacgtgcgcggtggggcaagcggcggcgggcgcggttccggtaggcggtgggcgcagcagggagggccaactggtcggcggcgagcgacgagcggcgacgggcgtggaggggtgcctccactcggctacgggcgtggctgggcgagcggcggcgggcgcgtctccggccgacggtgggcacaacactggttggcagcgagcggcaacgggcgcggctgggtggccctggtcggcggcgggtggcgctccaggcggcggcggggagggaccgccaccgtcacttatgccgccgccaccaccgccgtcgccgctttccctgtctgccctgccactcgacgactcctctgccgccgccgccgccgaacctggagaaagtaagggaagggaagggaaggggaggagcggctacggcgaggagttggcgtcgctgccagcgactcgccacccagccgcgcccgccgccgccgctcgcaccgcaacccacctcccgcccctacaagccccgtgagagagagagtgaagagggaaggggaggaacggctgcggcgaggagatggtgtcgccgccagcggctcgccacccagccgcgcccgctgtcgccgctcgcatgccaaccgcccatcgcccgccctcgcgcgcccaccgccgccgctcgcgtgccgaccgcccaccgcccgccctcgtgcgcccgctgtccaccgcccgccctcgtgcacccgccgcccacacttgtccgccgccgtgcgcgccgaccggccgcgcggccgctcctgatgacgagccaccgcccaccgctcgcctgacgacacgagagagagacagagagaggggtaggaggggaagaggataaggaggtgagagacaatgacaagtaggcccaaccatgtttaaaaaaaagaaatgctgactaggttgccacgtatacgccacgtaggacaaaactgctccggattgggtcgggggggggggggtaattcgtccggtattaaaagtttagggtgagtgatgtctggtttttgggttcagagggaaaattcagccgacggcgatagttaggggggtaattcgtactttttcctttcgcaaaatcaaatatcatcccctcatactgagataaaaacagtaagtatgaggggaacttttagaggttaattaaagcacatttatacaaacaagtgtacagagcagtgaattgcctactggaattgtgcacacattatcgtcccctcgtactgagataaaaacagtaagcatgaggggaatttttagaggttaattaaaatacaaaccacctcattccaaatatgtggatggaccatggcaggttgcccacttcatatttgaatgaaaccataaggattactagataaaaactctatccaaatatatgccttaagatagacaacaacatgtgaataactcaggtagcaattagatacgatgatgcttgtagatcaactattattctaaggtaaaaatatagtacagacgattattgcatcacagaatagctactaaatactaaagctcctacacaaagcattgtgaatgctcaaccaaaaaatacatggagcacaaatacttcagcaccatcctctaaatgattcattcatataagctattagccaggtttatggtcatgtgacaaggaaggaatacctggtcttctcggttttaacttgtagttagaccatatgcatgttgatatgatcagcatgcagttattagatgaaagaacagcagcctggctacaatttctaaatcattacaacaataggtgaaaagaagtaaactgcaagatagagtatataggttatacaatcgtagatagaggaagaactctag
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| CDS seq | atgcgctatacggagggacctatcccaagatatgcttgctgtggtgataccttgcagatcttctctctccaagtgaaagaagcaaaaggtggtcttgactggccgctgcatgtgtatggcttggttgccaccagggactctgtagatcaaaagcgcaaccttcttttcaggtgcacaagggataattgtcaaattctcactccacaggattcacacctgctgttaacaggcccatctcgtgcagttgtggtaattgatccagtaacgtttgaagttgaactaaaggtaaaaggaaaaacagaggctgaggataaggtgttgagcctaagggtctttatgcaccacactgtttacccagatacaaagtatactcgcatgctccgcagatgtttgtccagcaaacatggggagcttgagttgacatgtgctggacttgatagagcagttgaggccacaatgagaggggtcatggccagatcatatacgaggggcagcgtagagggaggggattttgtgctgcttgattctggagatggaagaatgcctattaacagctacgatggtggcattgagctttcaaggcgtgtggtttgtgtggaattgaggggagatgtggtggcaatggcatcgtcgcacaacctcaatgtcgtcgttgcaagaggcagtgctgttttcaagcctcgccgtgccgggagtactagtcttgtatgggaccttgggttttgtaaggtggaagctactatagaggaagaactctag
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| Protein seq | MRYTEGPIPRYACCGDTLQIFSLQVKEAKGGLDWPLHVYGLVATRDSVDQKRNLLFRCTRDNCQILTPQDSHLLLTGPSRAVVVIDPVTFEVELKVKGKTEAEDKVLSLRVFMHHTVYPDTKYTRMLRRCLSSKHGELELTCAGLDRAVEATMRGVMARSYTRGSVEGGDFVLLDSGDGRMPINSYDGGIELSRRVVCVELRGDVVAMASSHNLNVVVARGSAVFKPRRAGSTSLVWDLGFCKVEATIEEEL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0000250 | OsNaBo_12g0000250.01 | Chr12 | 205702 | 213103 | + | NAM | ||
| CDS seq | atgcgctatacggagggacctatcccaagatatgcttgctgtggtgataccttgcagatcttctctctccaagtgaaagaagcaaaaggtggtcttgactggccgctgcatgtgtatggcttggttgccaccagggactctgtagatcaaaagcgcaaccttcttttcaggtgcacaagggataattgtcaaattctcactccacaggattcacacctgctgttaacaggcccatctcgtgcagttgtggtaattgatccagtaacgtttgaagttgaactaaaggtaaaaggaaaaacagaggctgaggataaggtgttgagcctaagggtctttatgcaccacactgtttacccagatacaaagtatactcgcatgctccgcagatgtttgtccagcaaacatggggagcttgagttgacatgtgctggacttgatagagcagttgaggccacaatgagaggggtcatggccagatcatatacgaggggcagcgtagagggaggggattttgtgctgcttgattctggagatggaagaatgcctattaacagctacgatggtggcattgagctttcaaggcgtgtggtttgtgtggaattgaggggagatgtggtggcaatggcatcgtcgcacaacctcaatgtcgtcgttgcaagaggcagtgctgttttcaagcctcgccgtgccgggagtactagtcttgtatgggaccttgggttttgtaaggtggaagctactatagaggaagaactctag
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| Protein seq | MRYTEGPIPRYACCGDTLQIFSLQVKEAKGGLDWPLHVYGLVATRDSVDQKRNLLFRCTRDNCQILTPQDSHLLLTGPSRAVVVIDPVTFEVELKVKGKTEAEDKVLSLRVFMHHTVYPDTKYTRMLRRCLSSKHGELELTCAGLDRAVEATMRGVMARSYTRGSVEGGDFVLLDSGDGRMPINSYDGGIELSRRVVCVELRGDVVAMASSHNLNVVVARGSAVFKPRRAGSTSLVWDLGFCKVEATIEEEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0103150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01260 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0103150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000100 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000250 | SBH | 0.0 | 0.000000 | 0.494638 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000230 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000110 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000250 | SBH | 8.471019 | 3.542328 | 10.424809 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0002800 | SBH | 4.1134125 | 5.8618825 | 4.2491165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000270 | SBH | 0.458378 | 0.570691 | 0.744708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0002700 | SBH | 2.7554605 | 0.7957155 | 3.502628 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000120 | SBH | 0.057270 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000240 | SBH | 0.519531 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000240 | SBH | 1.311463 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000240 | SBH | 0.596748 | 0.0 | 0.971210 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004890 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000140 | RBH | 0.0 | 0.0 | 0.795612 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000240 | RBH | 1.000108 | 0.0 | 3.680707 |
