Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0000110 | OGI:11000380 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:55475-59640 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAAGCTTCCTTTGGTGGATGGGGAGGAGCAGTCGTCCTATGACCCCATGGGGGAAAAGTTGAAGATGATGAGCGGCAAGATTATTTCGGAGGAGCAGCGTCTAGTGGAGTTGGAGTTGGAGTTGGAAGATGAAGAGGAGGTGGAAGATGAGGAGTTGGCCGAGCTGATAACGGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTACCCCTCGCTATTCCTTCAACGACACCAGTAAGTAATAAATCCTCCTCCGCCCCGCCGTTTTATTCTGCTTCCGTTTCTTTCTTTACTTCAACGCAATCAAGATTATTTCTGCGAATCTATCTATCATGTTTCGTATCACCATTATATACTGGAGTATATACCACTATCTATTTGTGCTCCAATTCTGGTTGTTCCAAGTGTCTTGTTTTATTTTGGGTTAAGAGATTGCCAGGCTAAATACCTGTGTTTGTGTGTCCTCAACTATATATGCAACACATTTAGCATGTGAAACAAGTGCTAGGTTTTCCTAATTACACTCTATAAACCATCACAGTACAAATCCTGTTAATCACAACAGGATACTAGAAAGATTAAATTTGAACCAGATCCGATAGATTATCTGACGTGGTGCCAACTAATTATGTTTCATATATATATTGGGCCGCAAAAGCATGTTAAATAATCTGAGCCAATTTGTCTTTTTTTTCCCCTTCATCTAGCACAATGAATTCTGACAGAATTAAAGTGGAATATCAATTAGTTGCTGATTCCCTACTTATTGGAGCAATAATCCCTAATTTTGTATGTTTGTTTATCTTCTTTTTTTTTTTTCAAAGTAGCAGGCAGGAGATCTGCTAGCTAAATACATTAGAAGAAGCAACAAATAGAGTCTAGTTTAGTACATACTAAATAGGATATCTACAGCGCCAAGAATAGCAACTTGCATATCAAAATCCGCATTAGAGGGTATCAGCACTAAACGCTAAGGGTAGCTCGTTTACGTCTTGTATCACCAAGAAAACCACCTTGTTCTTGGGTTGGTCCTGGAAGACCCTCATGTTTCTTTCAAGCCGGATATTCCACCACGTAACAAGCAAAGCTCCCAATACTCCCTTTCTGTTTTCACATGGTGTCATTGCACTTGACTTGTTCCACCAATCTGATAGACAAGTGTAGGTTGAGTTCATTGCTGTGATCTGTAGTTTTTAGCGAATCATTTCCTACACTTTGGTCGTGAAGGAATATTCCTTAGCAAGATGATTGGTGTCCTCGAAAAAGCTTTAGTGCAGAGAGTACAAATCTCATTACATGGCCAATGTCTTTTAAGCAAATTTTTGGTTGCTAGTACCTTGTGGTGTAACAATAGCCAACCAAATAATTGGTGCTTTGGTTCGTTGTTTGCTTTCCAGAGGCTGGTAAAATTTGAGTATGACACACTTCCAGTGAATTGTGCAAGATACGCGCTTTTTGCCATATATGATGTCATTTTTTATCCCTGGCTGCAGTTTAACCCCAGCTAATAGATCTGCAATCCAAACTAGTTCATTGATTTCTTCAATTGTTGTTAGGGGCCTTAGCAGGAAATCTGTTGTCAGATATTTCAACTAGAATAGAGTTGTTTGTTCTCTTTGCTAGTTTGAACAGACCTGGCACCAGATCCTTTTTTCTCCCATTCTGAATCCAAGTAAATTTCATAAAACTACAGGTATTTTGCACAATTTATCACAAAACTACATATTTAAGAGCTTGTTTCACAAAACTACAGATTTAATGTCTCTGTTTATCACAAAACTACAGGTACTTTGTATAATCTATCATAAAACTATATATTTAAGAACTTGTTTCACAAAACTATAGATTTATTGTATTCGTTTATCACAGAACTACACATTTAGTGTCTTCATTTATCATAAAACTACGGATTTAGTGTCTCCATTATTACAAAACTACATATTTTGACAATGCTAATACCTGTAGTTTTGTGATAATGAAGACACTAAACTTGTAGTTTTGTGATAAATGAATATATTAAATCTGTAGTTTTGTGAAATAAATTCTTAAATATGTAGTTTTGTGAAATATTGTGCAAAGTGCATGTAGTTTTGTGATAAATGAATATATTGAATTTGTAGTTTTATGAAACAAGCTCTTAAATAGATCATGCAAAGTATATGTGGTTTTATGAAATTTACTCATCCAATTATCGTTCCAGAAGGTAGCTTTACTCCCGTCACCCAACGTGATGGTAGCTGCCGCCGCAAAAGGTTCTTTGTTGATTGTATCACAAGGAACCTCCATTTGGCGAAGGGCCCTGGCGAACTCCTGCAGCTCCAAAAATGGGTCCACCCAAATTTCTTGGTTTGGCTGGCATACAGTCGCCCAATTTACCAAACTGTGTCCAGGGGTGATATTTTCTGGGTCTTACCCTTTCCACAAAAAGGCTCTCCTAATTCTGTCAATTTTCTTGATCAACCATTTTTGTACGTAGAACTGTGAGATGGTATGTTGGGATTGAGCTCAGAGCAGTCTTGATATGTTGTTCATCTTACTCCTCATTCTCATCAAGGTTAATGTCTAGTACTCCATATATGTGCTTATCCACATTGTCACATCAATCATTTAACTAAAACTTGGATTTTTGAGTCAAAAATGGGACACAACAATAGCATCCACAATGCTATTATTTGATAATAAATATTACTGCTACTTGACTGCAGCAACCGTATGTCCCATGCGCTATACGGAGGGACCTATCCCAAGATATGCTTGCTGTGGTGATACCTTGCAGATCTTCTCTCTCCAAGTGAAAGAAGCAAAAGGTGGTCTTGACTGGCCGCTGCATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATCAAAGGCGCAACCTTCTTTTCAGGTGCACAAGGGATAATTGTCAAATTCTCACTCCACAGGTATCTATCTTGTAATTTCCTTATACCTTTATTGTTTTCTCATTTTTCTTTTGCAGCTTGAAGTGCTCAACCTATCATACTAGTAGATTACTACTGTTCTGTACACTTGTTTGTATAAATATGTTGTCTTTTTGGAGTTATTAGTGCATTCATAGGCTGGCTGCACCTAAACTGTCAATTGAAGGCATGTTTGCAATTTTTTTTCCTTACCACTCTTTTTTCACATAATTCATTGGTAAAAACTAAAAACTGAGGATTTGTTTAGTTCCCAAATTTTTTTTCCCAAAAACGTCACATCGAATCTTTGGATATATGCATGGAGCATTAAATATAGATAAAAAAAACTAATTGCACGGTTTGCACGGAAATCGCGAGACGAATCTTGTGAGCCTAATTAATCCATGATTAGCCATAAGTGCTACAGTAACCCACATGTGCTAATGACGGATTAATTAGGCTTAATAAATTCGTCTCGCGGTTTCTAGGCGAGTTATGAAATTAGTTTTGTCATTCATGTCCGAACCCCTTCCGACATCCGGTCAAACGTCCAATGTGACACCTAAAAATTTTCTTTTCGCGAACTAAACACACTGTGAGTTGATAGAATTGGCACCACTATGACCTATACCTATACTCCTTTTGAAATAATCCACTCGTGGTGTTGGCATTGAATCTGCTGTGTCAACTCTTCCTACCACAGTTTTCTATAAATCAACCTGTGATGATAGTTAATATTATCAACAGCCAAACATAGCAGTATTGCCACATGTATAACCAAGATGAGCACTCACTGTTGCAAATAAATGAATAGCATATTGCATGCAAAACATAAATTAGGTTTGTTTATTTTAGGCAATATTATGGCATACTTTCTTTTATTGGTAGCAAAGCTATTGCATTTACCTTGTCTATGGAAATAGAAGTTTTGTGATGGACCGTCTTTAACATGGGCTCGTAGGAAATAACTGCATGGATTGGTTGCATACTGGATCCTTATTATACGGAGGGAACCAAGTTTTAGTAATAATCAATTGGTTGTGATGCCTGCAGGATTCACACCTGCTGTTAACAGGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAGGTAAAAGGAAAAACAGAGGCTGAGGATAAGGTGTTGAGCCTAAGGGTCTTTATGCACCACACTGTGCATGCTCCGCAGATGTTTGTCCAGCAAACATGGGGAGCTTGA
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| CDS seq | ATGAAGCTTCCTTTGGTGGATGGGGAGGAGCAGTCGTCCTATGACCCCATGGGGGAAAAGTTGAAGATGATGAGCGGCAAGATTATTTCGGAGGAGCAGCGTCTAGTGGAGTTGGAGTTGGAGTTGGAAGATGAAGAGGAGGTGGAAGATGAGGAGTTGGCCGAGCTGATAACGGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTACCCCTCGCTATTCCTTCAACGACACCACAACCGTATGTCCCATGCGCTATACGGAGGGACCTATCCCAAGATATGCTTGCTGTGGTGATACCTTGCAGATCTTCTCTCTCCAAGTGAAAGAAGCAAAAGGTGGTCTTGACTGGCCGCTGCATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATCAAAGGCGCAACCTTCTTTTCAGGTGCACAAGGGATAATTGTCAAATTCTCACTCCACAGGATTCACACCTGCTGTTAACAGGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAGGTAAAAGGAAAAACAGAGGCTGAGGATAAGGTGTTGAGCCTAAGGGTCTTTATGCACCACACTGTGCATGCTCCGCAGATGTTTGTCCAGCAAACATGGGGAGCTTGA
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| Protein seq | MKLPLVDGEEQSSYDPMGEKLKMMSGKIISEEQRLVELELELEDEEEVEDEELAELITARDFRVSWEHRFTPRYSFNDTTTVCPMRYTEGPIPRYACCGDTLQIFSLQVKEAKGGLDWPLHVYGLVATRDSVDQRRNLLFRCTRDNCQILTPQDSHLLLTGPSRAVVVIDPVTFEVELKVKGKTEAEDKVLSLRVFMHHTVHAPQMFVQQTWGA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0000110 | OsARC_12g0000110.01 | Chr12 | 55475 | 59640 | + | NAM | ||
| CDS seq | ATGAAGCTTCCTTTGGTGGATGGGGAGGAGCAGTCGTCCTATGACCCCATGGGGGAAAAGTTGAAGATGATGAGCGGCAAGATTATTTCGGAGGAGCAGCGTCTAGTGGAGTTGGAGTTGGAGTTGGAAGATGAAGAGGAGGTGGAAGATGAGGAGTTGGCCGAGCTGATAACGGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTACCCCTCGCTATTCCTTCAACGACACCACAACCGTATGTCCCATGCGCTATACGGAGGGACCTATCCCAAGATATGCTTGCTGTGGTGATACCTTGCAGATCTTCTCTCTCCAAGTGAAAGAAGCAAAAGGTGGTCTTGACTGGCCGCTGCATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATCAAAGGCGCAACCTTCTTTTCAGGTGCACAAGGGATAATTGTCAAATTCTCACTCCACAGGATTCACACCTGCTGTTAACAGGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAGGTAAAAGGAAAAACAGAGGCTGAGGATAAGGTGTTGAGCCTAAGGGTCTTTATGCACCACACTGTGCATGCTCCGCAGATGTTTGTCCAGCAAACATGGGGAGCTTGA
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| Protein seq | MKLPLVDGEEQSSYDPMGEKLKMMSGKIISEEQRLVELELELEDEEEVEDEELAELITARDFRVSWEHRFTPRYSFNDTTTVCPMRYTEGPIPRYACCGDTLQIFSLQVKEAKGGLDWPLHVYGLVATRDSVDQRRNLLFRCTRDNCQILTPQDSHLLLTGPSRAVVVIDPVTFEVELKVKGKTEAEDKVLSLRVFMHHTVHAPQMFVQQTWGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0103150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0103150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000100 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000250 | RBH | 0.0 | 0.000000 | 0.494638 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000270 | RBH | 0.276803 | 0.096067 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000250 | SBH | 8.471019 | 3.542328 | 10.424809 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0002800 | SBH | 4.1134125 | 5.8618825 | 4.2491165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000270 | SBH | 0.458378 | 0.570691 | 0.744708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0002600 | RBH | 0 | 0.0570455 | 0.013646 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000240 | SBH | 0.519531 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000250 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000270 | SBH | 0.501846 | 1.450618 | 1.664167 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000240 | SBH | 1.000108 | 0.0 | 3.680707 |
