Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0024020 | OGI:11080140 | 5/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:29842772-29843492 | ||||||||
| Gene Symbol | WRKY41, OsWRKY41 | ||||||||||
| DNA seq | atggaattttcggcttccgatacgcacgggggtggagatggaggagatgaggaggcgatggatgctactgtaactgtttcgcacggcgggatgggccgtctcctccggcaactccggtcattaaaggctaccagtatcgatggtgtcattgacgagaaagacttgcagactttcaaagatattctcgagagattatgcggcaagctcaagcatctggcggaggtggagagccctagttacacggccaagggctggatggaggagatgcggaacctttgctatgacaccgaggactacttggacaaagttacgcaatccgccgccgatgtaggtgaaagtgatctgattaaggctcatcatcgaggtaagccgaagcgacaacgtcagtttgctgcagatttctcagtattaagggcccgtgcaaggggtgcgcaacagagatataaaagtcttaccatatatagccttccggcacaatccaccaaaCcggcttctgctgaactctctgtcctggataatactaaccgtgatgatatccataaacatactgatgatcttgtagagctgatcgaTttcgatgccccgaaacaattcaaggtggtggctatccttggatttgcaggtgttggcaaaacaacattagccagaagattatatgataaatatggggcgcggttcgaatactgcgcttttgtacgggtgtccagaaatcccgatttga
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| CDS seq | atggaattttcggcttccgatacgcacgggggtggagatggaggagatgaggaggcgatggatgctactgtaactgtttcgcacggcgggatgggccgtctcctccggcaactccggtcattaaaggctaccagtatcgatggtgtcattgacgagaaagacttgcagactttcaaagatattctcgagagattatgcggcaagctcaagcatctggcggaggtggagagccctagttacacggccaagggctggatggaggagatgcggaacctttgctatgacaccgaggactacttggacaaagttacgcaatccgccgccgatgtaggtgaaagtgatctgattaaggctcatcatcgagagctgatcgaTttcgatgccccgaaacaattcaaggtggtggctatccttggatttgcagaaatcccgatttga
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| Protein seq | MEFSASDTHGGGDGGDEEAMDATVTVSHGGMGRLLRQLRSLKATSIDGVIDEKDLQTFKDILERLCGKLKHLAEVESPSYTAKGWMEEMRNLCYDTEDYLDKVTQSAADVGESDLIKAHHRELIDFDAPKQFKVVAILGFAEIPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0024020 | OsNaBo_11g0024020.01 | Chr11 | 29842772 | 29843492 | + | NAM | ||
| CDS seq | atggaattttcggcttccgatacgcacgggggtggagatggaggagatgaggaggcgatggatgctactgtaactgtttcgcacggcgggatgggccgtctcctccggcaactccggtcattaaaggctaccagtatcgatggtgtcattgacgagaaagacttgcagactttcaaagatattctcgagagattatgcggcaagctcaagcatctggcggaggtggagagccctagttacacggccaagggctggatggaggagatgcggaacctttgctatgacaccgaggactacttggacaaagttacgcaatccgccgccgatgtaggtgaaagtgatctgattaaggctcatcatcgagagctgatcgaTttcgatgccccgaaacaattcaaggtggtggctatccttggatttgcagaaatcccgatttga
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| Protein seq | MEFSASDTHGGGDGGDEEAMDATVTVSHGGMGRLLRQLRSLKATSIDGVIDEKDLQTFKDILERLCGKLKHLAEVESPSYTAKGWMEEMRNLCYDTEDYLDKVTQSAADVGESDLIKAHHRELIDFDAPKQFKVVAILGFAEIPI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.496225 | 0.0 | 5.879279 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019900 | SBH | 1.285412 | 1.729782 | 5.029209 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023050 | SBH | 0.350881 | 2.159900 | 2.415120 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018940 | SBH | 0.859740 | 5.067581 | 4.423701 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018640 | SBH | 0.387979 | 0.122639 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0427200 | SBH | 6.6683825 | 128.104786 | 0.2345625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019460 | SBH | 0.313898 | 0.041075 | 1.635165 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0435100 | RBH | 2.5612015 | 0.070775 | 0.0102995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024000 | SBH | 0.841491 | 0.217777 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023990 | RBH | 1.229021 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019830 | SBH | 1.024400 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018580 | SBH | 0.278849 | 0.0 | 0.586516 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018740 | SBH | 0.150249 | 1.709918 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018910 | SBH | 0.764270 | 3.116920 | 2.230058 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016840 | SBH | 0.079447 | 1.142222 | 0.261122 |
