Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0021130 | OGI:11070640 | 7/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:26670820-26672723 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catgcagaaggtcaGagaaatctcggttgttgttagagcacacaaggcaaaatctgcattcgctgatcatcctgatcttggcattcgcaacctcacctctcttatggatctcaatgtgtggattaattgcgagggagctagggttcaagaggtgacggtgttggaagctgccattacagatgcaaccgctctacttcccaaccatCccacAccacatttcttcagagaaaatgaagaaaatatggtgaaagatgatcttcccaaccatccggcaccacatttcttcagagaaaatgaagagaagatggtgAaagatgaagcacacatgcaggagaaaatgttggagtaggacctgaagattcaaggattcatttctacagatAaacatacaggttaagataagtttttTGgtggATaatatcatatcagtaaatttgttggaaaccaaagtcataaacttgaaatccAagttacgaacataatctttaTttttttagttgtaatctttgagacataatctccataaccaccAaaaaaatatccccAaaattaaccttAaaaatctctACaatttgctgcctgcaacatcatatcatcattggctgatcgatctgttttccAaactcaaGtctcatgtcgtgtgcttcgctgctctccgccgccatccgCcgcggcgtcgccggcggccgtgccgccgcgtcgccgccgtccgcctCcgccatcgtgtcgcggccggcgaccgggtcccacatcctcaggatcgacgggtacaccAacacgaagagcAtcctcgccaccggcgagtccgccacgtcgaGgaggttcgccgtcggcggccacagcttcgtcatgcgatactaccccAacggcctcgacgacggctgcgccgactccatctCcctcttcatcgacgtcgccggcggcggcaacggcagcggcgtcgccggccatgcccggTtcagcgtgctcgaccacgccggctcgccggcgcgccgcaccgacgacgcctcgtcggaggtggtggatttcaggacgcacttctccggccagaggagcctcatcacgagggaggagctcgagaggtcgccggacatcctcagggacgactgcttcgccgtccgctgcgacctcaccgtcatggacgaacacttgctcaccgtcgatctggatcacgaggcggttctcgccgccgatgccgacgccgccgccgtcgtgccgccgtccgacctgcaccggcacctcgccgagttcctctggagcaaggaaggcgccgacgtcgtcatcgaggtaggcgacacgacgttccacgcgcAccggtgggtgctcgcggcgaggtcgcccgtgctcaaggcggagctctccgccttgccgtcgtcgccggcgacgctgcggctcgacgccgccatggacgccgacgcattcaGggcgctgctccacttcatctacaccgacacgctgcccgacgacgccgacaccgacgacgacgccatggcgcggcggctgctcgcggcggcggacgcgtacgggatggagaggctgaggctgatctgcgaggacaagctgcgccgccgcatcgccatgggcaacgtcgccgtgacactggcgctggcggagcagcaccattgccgcgcgctcaaggaggcttgcgtcgagttcTtgtcttctccgggaaatctcAaggcggccatggctaccgatggcttcgagcatctgaaggcaacatgtccTtcagttttgactgaactcgtcatgaaacaattagtttagctaaaatttTAaTtagtgggtattaagtcaaagtgtcaaactagtttctgcaaaaTtggtcaatagtattagtgtcAaaagtaatctcaccgagtcattgtgtttattatcgaaaatgcatggcccaattttctttc
More
|
||||||||||
| CDS seq | atgtcgtgtgcttcgctgctctccgccgccatccgCcgcggcgtcgccggcggccgtgccgccgcgtcgccgccgtccgcctCcgccatcgtgtcgcggccggcgaccgggtcccacatcctcaggatcgacgggtacaccAacacgaagagcAtcctcgccaccggcgagtccgccacgtcgaGgaggttcgccgtcggcggccacagcttcgtcatgcgatactaccccAacggcctcgacgacggctgcgccgactccatctCcctcttcatcgacgtcgccggcggcggcaacggcagcggcgtcgccggccatgcccggTtcagcgtgctcgaccacgccggctcgccggcgcgccgcaccgacgacgcctcgtcggaggtggtggatttcaggacgcacttctccggccagaggagcctcatcacgagggaggagctcgagaggtcgccggacatcctcagggacgactgcttcgccgtccgctgcgacctcaccgtcatggacgaacacttgctcaccgtcgatctggatcacgaggcggttctcgccgccgatgccgacgccgccgccgtcgtgccgccgtccgacctgcaccggcacctcgccgagttcctctggagcaaggaaggcgccgacgtcgtcatcgaggtaggcgacacgacgttccacgcgcAccggtgggtgctcgcggcgaggtcgcccgtgctcaaggcggagctctccgccttgccgtcgtcgccggcgacgctgcggctcgacgccgccatggacgccgacgcattcaGggcgctgctccacttcatctacaccgacacgctgcccgacgacgccgacaccgacgacgacgccatggcgcggcggctgctcgcggcggcggacgcgtacgggatggagaggctgaggctgatctgcgaggacaagctgcgccgccgcatcgccatgggcaacgtcgccgtgacactggcgctggcggagcagcaccattgccgcgcgctcaaggaggcttgcgtcgagttcTtgtcttctccgggaaatctcAaggcggccatggctaccgatggcttcgagcatctgaaggcaacatgtccTtcagttttgactgaactcgtcatgaaacaattagtttag
More
|
||||||||||
| Protein seq | MSCASLLSAAIRRGVAGGRAAASPPSASAIVSRPATGSHILRIDGYTNTKSILATGESATSRRFAVGGHSFVMRYYPNGLDDGCADSISLFIDVAGGGNGSGVAGHARFSVLDHAGSPARRTDDASSEVVDFRTHFSGQRSLITREELERSPDILRDDCFAVRCDLTVMDEHLLTVDLDHEAVLAADADAAAVVPPSDLHRHLAEFLWSKEGADVVIEVGDTTFHAHRWVLAARSPVLKAELSALPSSPATLRLDAAMDADAFRALLHFIYTDTLPDDADTDDDAMARRLLAAADAYGMERLRLICEDKLRRRIAMGNVAVTLALAEQHHCRALKEACVEFLSSPGNLKAAMATDGFEHLKATCPSVLTELVMKQLV |
||||||||||
| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0021130 | OsNaBo_11g0021130.01 | Chr11 | 26670820 | 26672723 | + | NAM | ||
| CDS seq | atgtcgtgtgcttcgctgctctccgccgccatccgCcgcggcgtcgccggcggccgtgccgccgcgtcgccgccgtccgcctCcgccatcgtgtcgcggccggcgaccgggtcccacatcctcaggatcgacgggtacaccAacacgaagagcAtcctcgccaccggcgagtccgccacgtcgaGgaggttcgccgtcggcggccacagcttcgtcatgcgatactaccccAacggcctcgacgacggctgcgccgactccatctCcctcttcatcgacgtcgccggcggcggcaacggcagcggcgtcgccggccatgcccggTtcagcgtgctcgaccacgccggctcgccggcgcgccgcaccgacgacgcctcgtcggaggtggtggatttcaggacgcacttctccggccagaggagcctcatcacgagggaggagctcgagaggtcgccggacatcctcagggacgactgcttcgccgtccgctgcgacctcaccgtcatggacgaacacttgctcaccgtcgatctggatcacgaggcggttctcgccgccgatgccgacgccgccgccgtcgtgccgccgtccgacctgcaccggcacctcgccgagttcctctggagcaaggaaggcgccgacgtcgtcatcgaggtaggcgacacgacgttccacgcgcAccggtgggtgctcgcggcgaggtcgcccgtgctcaaggcggagctctccgccttgccgtcgtcgccggcgacgctgcggctcgacgccgccatggacgccgacgcattcaGggcgctgctccacttcatctacaccgacacgctgcccgacgacgccgacaccgacgacgacgccatggcgcggcggctgctcgcggcggcggacgcgtacgggatggagaggctgaggctgatctgcgaggacaagctgcgccgccgcatcgccatgggcaacgtcgccgtgacactggcgctggcggagcagcaccattgccgcgcgctcaaggaggcttgcgtcgagttcTtgtcttctccgggaaatctcAaggcggccatggctaccgatggcttcgagcatctgaaggcaacatgtccTtcagttttgactgaactcgtcatgaaacaattagtttag
More
|
|||||||
| Protein seq | MSCASLLSAAIRRGVAGGRAAASPPSASAIVSRPATGSHILRIDGYTNTKSILATGESATSRRFAVGGHSFVMRYYPNGLDDGCADSISLFIDVAGGGNGSGVAGHARFSVLDHAGSPARRTDDASSEVVDFRTHFSGQRSLITREELERSPDILRDDCFAVRCDLTVMDEHLLTVDLDHEAVLAADADAAAVVPPSDLHRHLAEFLWSKEGADVVIEVGDTTFHAHRWVLAARSPVLKAELSALPSSPATLRLDAAMDADAFRALLHFIYTDTLPDDADTDDDAMARRLLAAADAYGMERLRLICEDKLRRRIAMGNVAVTLALAEQHHCRALKEACVEFLSSPGNLKAAMATDGFEHLKATCPSVLTELVMKQLV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.882479 | 1.040451 | 0.206123 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0631100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0631100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021010 | RBH | 0.331814 | 4.352257 | 2.287063 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020790 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020850 | RBH | 0.512334 | 0.990870 | 0.815435 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020370 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020910 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0369400 | RBH | 3.570938 | 10.811085 | 0.708379 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021390 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0391100 | RBH | 3.2144205 | 8.7779225 | 4.0657065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021180 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021310 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020970 | RBH | 3.654066 | 9.273914 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020630 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020750 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020670 | RBH | 0.497167 | 0.404799 | 0.441863 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020830 | SBH | 0.0 | 0.0 | 0.0 |
