Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0020610 | OGI:11069240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:26037506-26039064 | ||||||||
| Gene Symbol | UBP1-10, OsUBP1-10 | ||||||||||
| DNA seq | tcaggaatgtcTtTCATCATCCTCAAGGTCACTGGTCTGTCCATTAGGTTGAGCTGCTGCAGGTATACCAGAGGCGACTGTCGTTTGCTGAACTCGGGTAGCATCTACAGGTCCAGGAGAGCTGGAGCTAGCAAGCCTTGCATTGCTCCCTGGCGCCGCATCCTCCTGCCACAATTCGCTCTTCTCAATGCCACAGTGTGTAAATAGTGCCCAGATCTGGGTTATGAACTCGACAACGCAGTCAAGGTATTTGGCGTGCGCTTCTGCATTGGAACTAGGGGCAATGTTTACAAGCAACCGAACCCATACTTCAGCGAGGATCTCCCAGCGACTTTCTTGGTTTTCATTATCGATGAGCATCTTACCTAGCATCGCGCCTTGTTGCAGTATGTTTCCATTCAGCTTTGTATTATGTTCTCCTGGAAGCGCTTCCTGTGATGTTGCGATGAGCCTATCATACATGCTCTGCGGTGAGTCGCAGCCCTTGAGAATCTCACGAGCGCACTGAACAGTGTCTTGGAAGGTCTGCTTGGACACCCAAATGTTCTCAGGCAGCAGCTCAGGCCTTGAAACCAGCAGGTATGCACAGTACCGAGACAGGCAATTCGCTGTCTCACTGTAAGTTCTTAGGTTACCATCCcaagttctcatgcacaatgtaccgccgagaccagcgtttccttaggaatgacaaggcagacttcaggaatccagagctctttaaatcttgggcaagcttcatctcacagaggctggttgcgatgtgccaaaccagaataacgtgggaacatcgtcttgttacctcaaggcatgccgaccagtaccgctctgccaggtcattgacaagtagtgctgcaaaatctcttggtaaagaatcagtgcccatggaagggaggctgtggagtgactcaaagactttgcgtttcacattctcacgaagaatgatggggcgactgggtttggtcccattgaccttacattcaacaattcccatagtaagcaagtgcaccagcttccatttccatgggctgtaattgaatgattgcaggaagatgtactggccagtagttggaactctaggatccttccaccatacaagtagtatgtcaggtatattaaacagtcccctaaggaaatctctcatagaactgtcactgcaattcaccaacctgcacgtgacaaataatctcttccagtttgatgtgagtaacttgtgcacttcccactgctccatgcacagtgcgaaaaccatggctgtccccatgaggatcgtatcggcattaaacgaatgtccccaatgaaataaagctctgaatttgtggtccagcagatatcgcacggtgagCccCAACAATAGTAAAACAGAACAAACAAAGCTTCAGGAAGTACGATATGACAGGGAAGAATGGCCAGAGCAACCCTCCAGTGAACAACATTGGGTAACTGCTGTAGAGATAGTCCCTGAGGAACACAAGATCCATATCCAGGATACCAAATAACACCTTGTCAGCATCAACATTTTCTGTTGAGATCCGTGAGCAGACTAGTTTTCGGGTCAT
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| CDS seq | ATGACCCGAAAACTAGTCTGCTCACGGATCTCAACAGAAAATGTTGATGCTGACAAGGTGTTATTTGGTATCCTGGATATGGATCTTGTGTTCCTCAGGGACTATCTCTACAGCAGTTACCCAATGTTGTTCACTGGAGGGTTGCTCTGGCCATTCTTCCCTGTCATATCgttggtgaattgcagtgacagttctatgagagatttccttaggggactgtttaatatacctgacatactacttgtatggtggaaggatcctagagttccaactactggccagtacatcttcctgcaatcattcaattacagcccatggaaatggaagctggtgcacttgcttactatgggaattgttgaatgtaaggtcaatgggaccaaacccagtcgccccatcattcttcgtgagaatgtgaaacgcaaagtctttgagtcactccacagcctcccttccatgggcactgattctttaccaagagattttgcagcactacttgtcaatgacctggcagagcggtactggtcggcatgccttgaggtaacaagacgatgttcccacgttattctggtttggcacatcgcaaccagcctctgtgagatgaagcttgcccaagatttaaagagctctggattcctgaaTGAGACAGCGAATTGCCTGTCTCGGTACTGTGCATACCTGCTGGTTTCAAGGCCTGAGCTGCTGCCTGAGAACATTTGGGTGTCCAAGCAGACCTTCCAAGACACTGTTCAGTGCGCTCGTGAGATTCTCAAGGGCTGCGACTCACCGCAGAGCATGTATGATAGGCTCATCGCAACATCACAGGAAGCGCTTCCAGGAGAACATAATACAAAGCTGAATGGAAACATACTGCAACAAGGCGCGATGCTAGGTAAGATGCTCATCGATAATGAAAACCAAGAAAGTCGCTGGGAGATCCTCGCTGAAGTATGGGTTCGGTTGCTTGTAAACATTGCCCCTAGTTCCAATGCAGAAGCGCACGCCAAATACCTTGACTGCGTTGTCGAGTTCATAACCCAGATCTGGGCACTATTTACACACTGTGGCATTGAGAAGAGCGAATTGTGGCAGGAGGATGCGGCGCCAGGGAGCAATGCAAGGCTTGCTAGCTCCAGCTCTCCTGGACCTGTAGATGCTACCCGAGTTCAGCAAACGACAGTCGCCTCTGGTATACCTGCAGCAGCTCAACCTAATGGACAGACCAGTGACCTTGAGGATGATGAaAgacattcctga
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| Protein seq | MTRKLVCSRISTENVDADKVLFGILDMDLVFLRDYLYSSYPMLFTGGLLWPFFPVISLVNCSDSSMRDFLRGLFNIPDILLVWWKDPRVPTTGQYIFLQSFNYSPWKWKLVHLLTMGIVECKVNGTKPSRPIILRENVKRKVFESLHSLPSMGTDSLPRDFAALLVNDLAERYWSACLEVTRRCSHVILVWHIATSLCEMKLAQDLKSSGFLNETANCLSRYCAYLLVSRPELLPENIWVSKQTFQDTVQCAREILKGCDSPQSMYDRLIATSQEALPGEHNTKLNGNILQQGAMLGKMLIDNENQESRWEILAEVWVRLLVNIAPSSNAEAHAKYLDCVVEFITQIWALFTHCGIEKSELWQEDAAPGSNARLASSSSPGPVDATRVQQTTVASGIPAAAQPNGQTSDLEDDERHS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0020610 | OsNaBo_11g0020610.01 | Chr11 | 26037506 | 26039064 | - | NAM | ||
| CDS seq | ATGACCCGAAAACTAGTCTGCTCACGGATCTCAACAGAAAATGTTGATGCTGACAAGGTGTTATTTGGTATCCTGGATATGGATCTTGTGTTCCTCAGGGACTATCTCTACAGCAGTTACCCAATGTTGTTCACTGGAGGGTTGCTCTGGCCATTCTTCCCTGTCATATCgttggtgaattgcagtgacagttctatgagagatttccttaggggactgtttaatatacctgacatactacttgtatggtggaaggatcctagagttccaactactggccagtacatcttcctgcaatcattcaattacagcccatggaaatggaagctggtgcacttgcttactatgggaattgttgaatgtaaggtcaatgggaccaaacccagtcgccccatcattcttcgtgagaatgtgaaacgcaaagtctttgagtcactccacagcctcccttccatgggcactgattctttaccaagagattttgcagcactacttgtcaatgacctggcagagcggtactggtcggcatgccttgaggtaacaagacgatgttcccacgttattctggtttggcacatcgcaaccagcctctgtgagatgaagcttgcccaagatttaaagagctctggattcctgaaTGAGACAGCGAATTGCCTGTCTCGGTACTGTGCATACCTGCTGGTTTCAAGGCCTGAGCTGCTGCCTGAGAACATTTGGGTGTCCAAGCAGACCTTCCAAGACACTGTTCAGTGCGCTCGTGAGATTCTCAAGGGCTGCGACTCACCGCAGAGCATGTATGATAGGCTCATCGCAACATCACAGGAAGCGCTTCCAGGAGAACATAATACAAAGCTGAATGGAAACATACTGCAACAAGGCGCGATGCTAGGTAAGATGCTCATCGATAATGAAAACCAAGAAAGTCGCTGGGAGATCCTCGCTGAAGTATGGGTTCGGTTGCTTGTAAACATTGCCCCTAGTTCCAATGCAGAAGCGCACGCCAAATACCTTGACTGCGTTGTCGAGTTCATAACCCAGATCTGGGCACTATTTACACACTGTGGCATTGAGAAGAGCGAATTGTGGCAGGAGGATGCGGCGCCAGGGAGCAATGCAAGGCTTGCTAGCTCCAGCTCTCCTGGACCTGTAGATGCTACCCGAGTTCAGCAAACGACAGTCGCCTCTGGTATACCTGCAGCAGCTCAACCTAATGGACAGACCAGTGACCTTGAGGATGATGAaAgacattcctga
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| Protein seq | MTRKLVCSRISTENVDADKVLFGILDMDLVFLRDYLYSSYPMLFTGGLLWPFFPVISLVNCSDSSMRDFLRGLFNIPDILLVWWKDPRVPTTGQYIFLQSFNYSPWKWKLVHLLTMGIVECKVNGTKPSRPIILRENVKRKVFESLHSLPSMGTDSLPRDFAALLVNDLAERYWSACLEVTRRCSHVILVWHIATSLCEMKLAQDLKSSGFLNETANCLSRYCAYLLVSRPELLPENIWVSKQTFQDTVQCAREILKGCDSPQSMYDRLIATSQEALPGEHNTKLNGNILQQGAMLGKMLIDNENQESRWEILAEVWVRLLVNIAPSSNAEAHAKYLDCVVEFITQIWALFTHCGIEKSELWQEDAAPGSNARLASSSSPGPVDATRVQQTTVASGIPAAAQPNGQTSDLEDDERHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.649905 | 0.938893 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618500 | SBH | 0.208884 | 0.154744 | 0.557189 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40390 | SBH | 0.183784 | 0.079678 | 0.144996 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020480 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020550 | RBH | 0.0 | 0.292389 | 0.601658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020340 | RBH | 0.0 | 3.641774 | 1.228930 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019890 | RBH | 0.0 | 0.024057 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020400 | RBH | 0.284621 | 0.0 | 2.160211 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362100 | RBH | 0.0230995 | 0.0235175 | 0.01787 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020890 | RBH | 0.0 | 0.152491 | 0.609901 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380200 | RBH | 0.655395 | 0.096158 | 4.0214475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020690 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020840 | RBH | 0.099185 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020490 | RBH | 0.0 | 2.343819 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020140 | RBH | 0.100232 | 0.0 | 0.062591 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020250 | RBH | 0.053891 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020630 | RBH | 0.0 | 1.153741 | 0.164063 |
