Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_11g0020480 | OGI:11069240 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr11:24512867-24513941 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGAGCATTCCCCTGTTACAATCACAACACAGAAAACATTCACACAAGAAACAAATACTAGTGTTCAAATGTCATGATGAGATGCAAATTTTACCGACAAAACTGAAACCATGAGGGGAGCAGAGCATCAGCCATCAGCAATTCAGGTTTCAGGACATACCAGAAGTAGGACTAGCCTCTACATGAATTTCTGAAGATCGAGCAGCAGGTGGACTAGAGCTGACTGTGTCCTGAACATGGGTAGACACATCACTGCTCTGATTAGATGGTCCAGGAGTGCTGTTCCTGAAATTTGCACTCTTCTGCTGTTGCCATAATTTGCTCTTCTCGATGCCACAGTGGCAAAACAAAGCCCAGATGACGGTTACGAACTCGACACCGGATTTGAGGTCCTCGGCAAGAGCTGCTGCGTCAGAACTGGGAGCAATGTGCACAAGCAAGTGAACCCACACATCAGATAGGATCTCCCAACGACATTTTTGGTCCTCCTTCTTGATGAGTTCATTAGCCAGTATAGCACCTTGTTGCAATATGTTTCCACTCAGATTTAGACCATGCGTACCTTGAACAAGAGCTTTCTGCGCCTCTTTCATAAGCTTGTTGTATATGCTCTGCCAGGAGTGACAATCACTGAGCATTTCATGAGCACACTGAACAGCATCTTGAAAGGCCTTCTTGGACATCAAAATGGTTTCTGGGAGCAGTTTGGGCTTTGAAGCCAGCAGGTACATACAGTACCATGATAAGCAATTTGACACTGTGTATGCCTTTTGAAGCTCACCTGTAAGAGCTTTTTCATCCACCAGAAACGATGATAATCTTGACATTGTTGTTAAGTTGATTTTATGGTCATTGGCAAGCTTGATCTCACATAGGCTTGTTGCGATGTGCCAGACCAGAATAACACGGGAGCATGTTGGTACCTCTGCAAGGCATGCCAACCAATAACGCTCTGCTCTGTCACTGACACGAGACAAAGGGAGGTCTCTTGACAAAAGATGACCCTCGAGATCCATGGAGCGGAGTGCTTGAATTACTGCTGCCTTCACATTCTTGGCCATACTGTCATTCAT
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| CDS seq | ATGAATGACAGTATGGCCAAGAATGTGAAGGCAGCAGTAATTCAAGCACTCCGCTCCATGGATCTCGAGGGTCATCTTTTGTCAAGAGACCTCCCTTTGTCTCGTGTCAGTGACAGAGCAGAGCGTTATTGGTTGGCATGCCTTGCAGAGGTACCAACATGCTCCCGTGTTATTCTGGTCTGGCACATCGCAACAAGCCTATGTGAGATCAAGCTTGCCAATGACCATAAAATCAACTTAACAACAATGTCAAGATTATCATCGTTTCTGGTGGATGAAAAAGCTCTTACAGGTGAGCTTCAAAAGGCATACACAGTGTCAAATTGCTTATCATGGTACTGTATGTACCTGCTGGCTTCAAAGCCCAAACTGCTCCCAGAAACCATTTTGATGTCCAAGAAGGCCTTTCAAGATGCTGTTCAGTGTGCTCATGAAATGCTCAGTGATTGTCACTCCTGGCAGAGCATATACAACAAGCTTATGAAAGAGGCGCAGAAAGCTCTTGTTCAAGGTACGCATGGTCTAAATCTGAGTGGAAACATATTGCAACAAGGTGCTATACTGGCTAATGAACTCATCAAGAAGGAGGACCAAAAATGTCGTTGGGAGATCCTATCTGATGTGTGGGTTCACTTGCTTGTGCACATTGCTCCCAGTTCTGACGCAGCAGCTCTTGCCGAGGACCTCAAATCCGGTGTCGAGTTCGTAACCGTCATCTGGGCTTTGTTTTGCCACTGTGGCATCGAGAAGAGCAAATTATGGCAACAGCAGAAGAGTGCAAATTTCAGGAACAGCACTCCTGGACCATCTAATCAGAGCAGTGATGTGTCTACCCATGTTCAGGACACAGTCAGCTCTAGTCCACCTGCTGCTCGATCTTCAGAAATTCATGTAGAGGCTAGTCCTACTTCTGGGGAATGCTCTTGA
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| Protein seq | MNDSMAKNVKAAVIQALRSMDLEGHLLSRDLPLSRVSDRAERYWLACLAEVPTCSRVILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGELQKAYTVSNCLSWYCMYLLASKPKLLPETILMSKKAFQDAVQCAHEMLSDCHSWQSIYNKLMKEAQKALVQGTHGLNLSGNILQQGAILANELIKKEDQKCRWEILSDVWVHLLVHIAPSSDAAALAEDLKSGVEFVTVIWALFCHCGIEKSKLWQQQKSANFRNSTPGPSNQSSDVSTHVQDTVSSSPPAARSSEIHVEASPTSGECS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_11g0020480 | OsAzu_11g0020480.01 | Chr11 | 24512867 | 24513941 | - | NAM | ||
| CDS seq | ATGAATGACAGTATGGCCAAGAATGTGAAGGCAGCAGTAATTCAAGCACTCCGCTCCATGGATCTCGAGGGTCATCTTTTGTCAAGAGACCTCCCTTTGTCTCGTGTCAGTGACAGAGCAGAGCGTTATTGGTTGGCATGCCTTGCAGAGGTACCAACATGCTCCCGTGTTATTCTGGTCTGGCACATCGCAACAAGCCTATGTGAGATCAAGCTTGCCAATGACCATAAAATCAACTTAACAACAATGTCAAGATTATCATCGTTTCTGGTGGATGAAAAAGCTCTTACAGGTGAGCTTCAAAAGGCATACACAGTGTCAAATTGCTTATCATGGTACTGTATGTACCTGCTGGCTTCAAAGCCCAAACTGCTCCCAGAAACCATTTTGATGTCCAAGAAGGCCTTTCAAGATGCTGTTCAGTGTGCTCATGAAATGCTCAGTGATTGTCACTCCTGGCAGAGCATATACAACAAGCTTATGAAAGAGGCGCAGAAAGCTCTTGTTCAAGGTACGCATGGTCTAAATCTGAGTGGAAACATATTGCAACAAGGTGCTATACTGGCTAATGAACTCATCAAGAAGGAGGACCAAAAATGTCGTTGGGAGATCCTATCTGATGTGTGGGTTCACTTGCTTGTGCACATTGCTCCCAGTTCTGACGCAGCAGCTCTTGCCGAGGACCTCAAATCCGGTGTCGAGTTCGTAACCGTCATCTGGGCTTTGTTTTGCCACTGTGGCATCGAGAAGAGCAAATTATGGCAACAGCAGAAGAGTGCAAATTTCAGGAACAGCACTCCTGGACCATCTAATCAGAGCAGTGATGTGTCTACCCATGTTCAGGACACAGTCAGCTCTAGTCCACCTGCTGCTCGATCTTCAGAAATTCATGTAGAGGCTAGTCCTACTTCTGGGGAATGCTCTTGA
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| Protein seq | MNDSMAKNVKAAVIQALRSMDLEGHLLSRDLPLSRVSDRAERYWLACLAEVPTCSRVILVWHIATSLCEIKLANDHKINLTTMSRLSSFLVDEKALTGELQKAYTVSNCLSWYCMYLLASKPKLLPETILMSKKAFQDAVQCAHEMLSDCHSWQSIYNKLMKEAQKALVQGTHGLNLSGNILQQGAILANELIKKEDQKCRWEILSDVWVHLLVHIAPSSDAAALAEDLKSGVEFVTVIWALFCHCGIEKSKLWQQQKSANFRNSTPGPSNQSSDVSTHVQDTVSSSPPAARSSEIHVEASPTSGECS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0618500 | RBH | 0.208884 | 0.154744 | 0.557189 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40390 | RBH | 0.183784 | 0.079678 | 0.144996 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0618500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020510 | SBH | 0.117352 | 2.024015 | 2.899983 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020610 | SBH | 0.0 | 0.000000 | 0.084111 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0020390 | SBH | 0.167654 | 0.0 | 0.987137 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019940 | SBH | 0.028389 | 0.031309 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020470 | SBH | 0.552885 | 1.374641 | 1.324371 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0362200 | SBH | 0.0942275 | 3.8585355 | 0.212157 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020950 | SBH | 0.0 | 0.042569 | 0.032708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0381000 | SBH | 0.8838315 | 0.6984755 | 2.276962 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020740 | SBH | 0.031960 | 0.024382 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020890 | SBH | 0.193631 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0020500 | SBH | 0.0 | 5.644038 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020200 | SBH | 0.079695 | 0.0 | 0.170719 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020310 | SBH | 0.0 | 0.366843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020260 | SBH | 0.0 | 0.305969 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020630 | SBH | 0.0 | 1.153741 | 0.164063 |
