Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0020070 | OGI:11019930 | 10/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:25505820-25507181 | ||||||||
| Gene Symbol | WRKY125, OsWRKY125, RYMV3, OsRYMV3 | ||||||||||
| DNA seq | atgatcttgaaagatgatttggtgaagcaatgggcagctgagggTtttgtctctgcaaaagaagggaaagatgttgtggaagttggcgggaactaTtttgatgaacttgtcaatctgggcctgatccaacatatggacctcgactataatgacgagatgttgtatgtagtgCcccatatggtacttgatcttattacacgcaagtccatagaagataatttcgtcattgtcatcaattattctcaaacaaaagttcggttgtcggagaaggttcatcggctgtccctccactttggcagtgcaacaaatgcaacaacaccaacaagtatcaatctgtcgcaagttcgttcgcttagctttgtgggactattcaaccgcatgccttcaattaaggacttcaagtttctccgagttgcaatccttcatactttgggggacaatagaagcaggtgtttcaacctcacagcaatttgtgcactgTtccagctgATatatttgcagatcagatgtaacgtcgatgtaaaactgccacacaagatggaccatctaacacagttggAaaccctggagataaatgcagctgttccgtccgacgttatgcgtataccgagtttattgtatctccaacctgaaagggagaaaaaactgcacaccgtgaatggtaacacaaaatatctcactctgggtcctactgcttcgagcacggttagcgcatactctcctcccatctttcttcagagattggagctgttgccaattccaagacttccccaatggattcaacaaCcccagaagctctcttgtttgaaaattatggtcggggaactacataggagtgatattggtgtccttgcaggattgccggctctcacagttctgtgcgtgtatatccggcaacccactgcagaaagcttcatcattgaaagagggactttccctgttctcaagtactttgagtttatgtgtgatgtaatactgttcctggaatttcaggaagaagcaatgcccaatcttaggaggctcaaggtgggcttcaacgctcataagggacagaagtatggcaatatgcttgctggcattcagcacctgttaaaccttaaggagattgctagaaaaattggggcagccacggatgctgatgaatctgacaagagagctgcggagtatgcttttcattgtgcgatcagcaaacatccatgttgtcgaaacttcgacgtgagaagggtggatcaagttgatgaagattattctccttcagagatacaggaatgggaccaagataaggactcttccagcgagcaacaatggactccaaagaaacaacctgaagaactggaaaacgagtcAaaggacagtgggtaa
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| CDS seq | atgatcttgaaagatgatttggtgaagcaatgggcagctgagggTtttgtctctgcaaaagaagggaaagatgttgtggaagttggcgggaactaTtttgatgaacttgtcaatctgggcctgatccaacatatggacctcgactataatgacgagatgttgtatgtagtgCcccatatggtacttgatcttattacacgcaagtccatagaagataatttcgtcattgtcatcaattattctcaaacaaaagttcggttgtcggagaaggttcatcggctgtccctccactttggcagtgcaacaaatgcaacaacaccaacaagtatcaatctgtcgcaagttcgttcgcttagctttgtgggactattcaaccgcatgccttcaattaaggacttcaagtttctccgagttgcaatccttcatactttgggggacaatagaagcaggtgtttcaacctcacagcaatttgtgcactgTtccagctgATatatttgcagatcagatgtaacgtcgatgtaaaactgccacacaagatggaccatctaacacagttggAaaccctggagataaatgcagctgttccgtccgacgttatgcgtataccgagtttattgtatctccaacctgaaagggagaaaaaactgcacaccgtgaatggtaacacaaaatatctcactctgggtcctactgcttcgagcacggttagcgcatactctcctcccatctttcttcagagattggagctgttgccaattccaagacttccccaatggattcaacaaCcccagaagctctcttgtttgaaaattatggtcggggaactacataggagtgatattggtgtccttgcaggattgccggctctcacagttctgtgcgtgtatatccggcaacccactgcagaaagcttcatcattgaaagagggactttccctgttctcaagtactttgagtttatgtgtgatgtaatactgttcctggaatttcaggaagaagcaatgcccaatcttaggaggctcaaggtgggcttcaacgctcataagggacagaagtatggcaatatgcttgctggcattcagcacctgttaaaccttaaggagattgctagaaaaattggggcagccacggatgctgatgaatctgacaagagagctgcggagtatgcttttcattgtgcgatcagcaaacatccatgttgtcgaaacttcgacgtgagaagggtggatcaagttgatgaagattattctccttcagagatacaggaatgggaccaagataaggactcttccagcgagcaacaatggactccaaagaaacaacctgaagaactggaaaacgagtcAaaggacagtgggtaa
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| Protein seq | MILKDDLVKQWAAEGFVSAKEGKDVVEVGGNYFDELVNLGLIQHMDLDYNDEMLYVVPHMVLDLITRKSIEDNFVIVINYSQTKVRLSEKVHRLSLHFGSATNATTPTSINLSQVRSLSFVGLFNRMPSIKDFKFLRVAILHTLGDNRSRCFNLTAICALFQLIYLQIRCNVDVKLPHKMDHLTQLETLEINAAVPSDVMRIPSLLYLQPEREKKLHTVNGNTKYLTLGPTASSTVSAYSPPIFLQRLELLPIPRLPQWIQQPQKLSCLKIMVGELHRSDIGVLAGLPALTVLCVYIRQPTAESFIIERGTFPVLKYFEFMCDVILFLEFQEEAMPNLRRLKVGFNAHKGQKYGNMLAGIQHLLNLKEIARKIGAATDADESDKRAAEYAFHCAISKHPCCRNFDVRRVDQVDEDYSPSEIQEWDQDKDSSSEQQWTPKKQPEELENESKDSG |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0020070 | OsNaBo_11g0020070.01 | Chr11 | 25505820 | 25507181 | + | NAM | ||
| CDS seq | atgatcttgaaagatgatttggtgaagcaatgggcagctgagggTtttgtctctgcaaaagaagggaaagatgttgtggaagttggcgggaactaTtttgatgaacttgtcaatctgggcctgatccaacatatggacctcgactataatgacgagatgttgtatgtagtgCcccatatggtacttgatcttattacacgcaagtccatagaagataatttcgtcattgtcatcaattattctcaaacaaaagttcggttgtcggagaaggttcatcggctgtccctccactttggcagtgcaacaaatgcaacaacaccaacaagtatcaatctgtcgcaagttcgttcgcttagctttgtgggactattcaaccgcatgccttcaattaaggacttcaagtttctccgagttgcaatccttcatactttgggggacaatagaagcaggtgtttcaacctcacagcaatttgtgcactgTtccagctgATatatttgcagatcagatgtaacgtcgatgtaaaactgccacacaagatggaccatctaacacagttggAaaccctggagataaatgcagctgttccgtccgacgttatgcgtataccgagtttattgtatctccaacctgaaagggagaaaaaactgcacaccgtgaatggtaacacaaaatatctcactctgggtcctactgcttcgagcacggttagcgcatactctcctcccatctttcttcagagattggagctgttgccaattccaagacttccccaatggattcaacaaCcccagaagctctcttgtttgaaaattatggtcggggaactacataggagtgatattggtgtccttgcaggattgccggctctcacagttctgtgcgtgtatatccggcaacccactgcagaaagcttcatcattgaaagagggactttccctgttctcaagtactttgagtttatgtgtgatgtaatactgttcctggaatttcaggaagaagcaatgcccaatcttaggaggctcaaggtgggcttcaacgctcataagggacagaagtatggcaatatgcttgctggcattcagcacctgttaaaccttaaggagattgctagaaaaattggggcagccacggatgctgatgaatctgacaagagagctgcggagtatgcttttcattgtgcgatcagcaaacatccatgttgtcgaaacttcgacgtgagaagggtggatcaagttgatgaagattattctccttcagagatacaggaatgggaccaagataaggactcttccagcgagcaacaatggactccaaagaaacaacctgaagaactggaaaacgagtcAaaggacagtgggtaa
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| Protein seq | MILKDDLVKQWAAEGFVSAKEGKDVVEVGGNYFDELVNLGLIQHMDLDYNDEMLYVVPHMVLDLITRKSIEDNFVIVINYSQTKVRLSEKVHRLSLHFGSATNATTPTSINLSQVRSLSFVGLFNRMPSIKDFKFLRVAILHTLGDNRSRCFNLTAICALFQLIYLQIRCNVDVKLPHKMDHLTQLETLEINAAVPSDVMRIPSLLYLQPEREKKLHTVNGNTKYLTLGPTASSTVSAYSPPIFLQRLELLPIPRLPQWIQQPQKLSCLKIMVGELHRSDIGVLAGLPALTVLCVYIRQPTAESFIIERGTFPVLKYFEFMCDVILFLEFQEEAMPNLRRLKVGFNAHKGQKYGNMLAGIQHLLNLKEIARKIGAATDADESDKRAAEYAFHCAISKHPCCRNFDVRRVDQVDEDYSPSEIQEWDQDKDSSSEQQWTPKKQPEELENESKDSG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.526496 | 10.715766 | 17.111403 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0684100 | SBH | 3.183960 | 2.189007 | 2.015002 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45750 | SBH | 2.154246 | 1.370123 | 0.517376 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0684100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019900 | RBH | 1.285412 | 1.729782 | 5.029209 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020060 | SBH | 0.403046 | 0.503076 | 7.053586 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019810 | RBH | 0.0 | 1.277061 | 8.648860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023680 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019910 | RBH | 10.528748 | 10.091044 | 67.766655 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0346800 | SBH | 4.574145 | 13.658653 | 16.609958 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020370 | SBH | 0.380389 | 0.037181 | 1.955859 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0373500 | RBH | 5.666233 | 12.9110585 | 0.023048 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024280 | SBH | 0.232568 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020370 | RBH | 0.133812 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019830 | RBH | 1.024400 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018740 | SBH | 0.150249 | 1.709918 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019690 | SBH | 0.296461 | 0.0 | 6.449069 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021120 | SBH | 4.939681 | 20.642439 | 2.499223 |
