Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0015350 | OGI:11055240 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:20335172-20340205 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaTATtcaatatccagttcaagaacaaaattttgagcttggagaaaaatcttttccaaatttaaacgaagctgacattccAGatctggatcccgaccaactaattggattttcgattgggattgtttaaCcTgtgattaaaatataaataatAAttatacctaaTtgaaagttacggttgtggtatttataaaCacgtaccttttCtggaatatactcgttttcatgctcaaataggtctcttagtccatcaatgaaagataaaccagtttctgtggttggtgcttgataattagaactttgagttatccagtgaggcatagccttcgcccattgtaaactagcattcatgaatttcaccagttcgctaatgatcttgtccttttcaggatctccagatggaacctgtggttgactttttacaTgtaccaagatgaataaattgagggcaattatgttctcaaaTttttctcgtacattcaacaatgcactgtgtttaagaactttcatcctgaaatataaaaacattaaacAatattacatctaaagaatttatatgtgagtaaatttcacaaaactgcaactaattatcaaaactatcactttgtaacatttcacaaaaatgcaacaatagcaaatgaTtttttaagaaaacagatggtcctgctatttggaggtcctgggatgagatagttgtggcattttttcaataaaatatgaattacatctaatttggtgctatgtagttttaaaatagagtaaaTttcataaaaccaCacctattatggtccaagttgtgcacaataaccccgggtattatggtcctaaagttttacaaaaccacaccgttaaccatagatggggttttatgaaatttattttttaaatAtaatattctattAaggcgatcttatgaaaagaaTtttctttatccaactaaaaTttaaaggccaatctccttcactcaaccttctgtAaaatatttaactaaatgaaaattataaaacttgtaACaagttataagaaatctcttatttccttgtttaccatagatataacatggaagtaatatctaagaacgagtcaagctaaaaggaacagattttggaaagctcgctatgcaatgatgtccatatcaaggggtttcaaatagatccatagctataaatttaggctcacctccattactgcagatacattcattttagaggaaaaatgtcaagcactaaatagaTgagttgataaaacatgtccattttaaaacttatacatacatgtagtatacacagtgattagggggggggggggcataaattttcaggacccttaggtggtcacccCacgcatcacgcccaaggaaaaaccatgctttaacacctgataagaggacctaacttgcaacaatgtaagtattgtgtatgtgTttaattgacaggtgggcgtagagctatcaaaaacaaagttgcagaTtttggttaaaatcttgaactattgttgtagttttcAaaaaatgcccaaggaataaggggaaagaccataccctctcagagttttgttcTttaacttcttacacagatcttcaatctcagcagtgtacgaatcatttcttttcgctgcaagctcaagcaatttgccaaggtctacgcaatcttcagacttttttgcctcatttccccctgtatgtataacGggttagcaaatatttgacagaaggtaaatgtgagggatatgtaGggcagggtagtattttacaaccatataaaatttaagaatcaatttgatttcgttcataaaaagtatgaaatcagaaacaatgaatttgcactatgtcaacattactttgtagtttgtaagtttcatacgtattttacatggtcattaggatgtataatagtagtacctcacctatatattttaattatgagagaattcttcacaacttctgcacgtaacctatagagtgatttctataaTttcaTtggTttacaactgatatataactaaaaggtcaacttgTAtataaacttcacgataaaattataaaattattagaggctttctatgaacatagcaatttatactgactAtataagtcgaaacacttcTttttttttgccaaaTtcatacctgcaaagcaaaaactccaaatctttgcatcagtacacttctccaTTttgtagatgcatacgtgTttccctttcaaaccagaacaccagtaaccttggcaatgaaGggtgataattgctcgaacaatatCcctaaccaaacacaaaacaattagtaaatgcatcaacaagcataaataaattcagtcagataagCcaaaacattaacgacatacccagttatcttgatgaaTtcttcagtgaatctcttcatactgacagttttatcattgaatccatcagtgtagttagaCAGcaaacaacttggcggtggaacagctaagaaGgtgtattccctgtaccttcgaatacctctgccatatgacaatggtttgactgtgaatgggctattaactgcaacaagtcgcacatacaaggcatctgcagcttctccatcacatgaggtaaatgcaagcacagatgctttggtttgtattctaagtcctttaCcaaacttaacagtacccttataatatttcacatagtttgctgaactcccaagtttttggaccttgctgtctgttatgactatttgagaacttccattgacctaagaagatggtaacccgatagatcaaGgaagtggttagaagtaaaagaaagcagcacaatgacatgaaaaagctacaaaacaatcatatatgtgttttaggagaatttcatatagattgatcaatatatactcaaacagttttgacaaaatttcatatttcattggaaacacataggagagtacatataatatatttcagttgatttgcactgtcaaagttcctattgaaccatgtagTtttttgaaccttatgtctacacgaacagcacaacaaagaaacatgcaattgagtatatatgtgcagtttatggacaaTtgagtgaatatatttgcgtattggaatgtgccaagaaaatattaaatttcaatggaatattctacctttaacatcactttagttaacttgccatctataaaatgcttgtatgtctagctttaccattgatcaatggatgagtgagatttgagacaaaattttacctgggacaaaatgttgtggcttgtattatctgacatcgtgtccatgttgtatcctgcaataagaatagcgagcatttgagtaaaatgggctgttctaaagcaaactataaatgaacagacaatagtggactagtttgggtgtggccaggtttatgtaccTttatttaatgccaacATatatgctacaattgttgaacgtgataatcagcttctttaggcttgaTtttagggactctattcatctgtactaatataaggtatcagaactacagttacacagtggaagtgcatctagatgtttccaaaccgtcggagtagcgcaagccaatgttcatgattaaaagtagttttctcctagagatcctataattctcccgagcgactatcatgcgtggtgcaacatgttgccccaattaTtttttcgccgggccggcaaaactttgccggccagagtatattaagaaagaatgcgagaatgtaaattatcctatcaccccaggaacagaactcagggagcagAaaagagaaaagggcaaggcaaagaaaagctactaaaaacccctcctcaaacagggccgccccaaccacagatcagccagctggaatcaaccccgcagctgtccaggtctcccattcatccatgatggtcgcacatagattaacaggggagcttgttttcccttcatacacacgcgcattgcgttctttccaaaTtaaccaagtcaccaaaataacacccgcatcaaatacctttctctccttcttagcaataaacttacgagcatcacaccaccaggagagatcaacagacggtgttgtttgaaggtgaCcaaggcgacctctgacaaggccccagacctcctgagtgaaggagcagctactaaagatgtggtggcatgactcgccgccgtttgagcagaggtggcaaattggggcaagatgccagcccctgcgttgaaggttgtcggcagtaaggcaagcgctcttcatcacacaaaacataaagaatttgcatcgTtccccaattatgtcccggcttccacaagagggtctagtgtttggagcacctgatcgatgcttacgcccacagcccattgccaccacagagatcccctacgcccgtttcgacgcccaacacccgaggatgctcaCccctaccgtcaaaccgttgaggatgaccagacctagtctctttggtgtgaaggccgccgagcctcttggctaatgcaatgtgcagctatcactctcaagtctcgacacacagcgcacagcaagtatgcctctccaatacgacgtgccaaattccgagagaataaggtaatggcatgcattatggccccaagttaacaccattacgtttgtctcacataataaggtcatgtccatagggtgaaatgagcaaagttgagaaaacaaggttagattggcttagactttataacagagtcaaaagcgtaattgcctccatagtaattgtattatcttgatgtaactgtttaacatggataaaacttggtttatcttaaagaaatcaaaaggattcccAaaaatagaagcatatgaaggtgaaatgctgagcatatgtttgctattttgtaccttggggcaaaaggaggaggagtcgcagacaggccgcggcgtcgcgtcgacggaggcgctcggtgtcggcgacccgcctccgcaggtacgggcgaaacgaacgccggcgaaggtgatgcagcgcgcgctctgggggggctccggctgcgccgcgtcaaccggcggcgcgaggtggggagggagtggaggggcccgacgaggcgatggatgcccgcgtccgtccctgcctggtcgcc
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| CDS seq | atggacacgatgtcagataatacaagccacaacattttgtcccaggtcaatggaagttctcaaatagtcataacagacagcaaggtccaaaaacttgggagttcagcaaactatgtgaaatattataagggtactgttaagtttgGtaaaggacttagaatacaaaccaaagcatctgtgcttgcatttacctcatgtgatggagaagctgcagatgccttgtatgtgcgacttgttgcagttaatagcccattcacagtcaaaccattgtcatatggcagaggtattcgaaggtacagggaatacacCttcttagctgttccaccgccaagttgtttgCTGtctaactacactgatggattcaatgataaaactgtcagtatgaagagattcactgaagaAttcatcaagataactgggGatattgttcgagcaattatcaccCttcattgccaaggttactggtgttctggtttgaaagggaaAcacgtatgcatctacaaAAtggagaagtgtactgatgcaaagatttggagtttttgctttgcagaaaaAtttgagaacataattgccctcaatttattcatcttggtacAtgtaaaaagtcaaccacaggttccatctggagatcctgaaaaggacaagatcattagcgaactggtgaaattcatgaatgctagtttacaatgggcgaaggctatgcctcactggataactcaaagttctaattatcaagcaccaaccacagaaactggtttatctttcattgatggactaagagacctatttgagcatgaaaacgagtatattccaGaaaagGttaaacaatcccaatcgaaaatccaattagttggtcgggatccagatCTggaatgtcagcttcgtttaaatttggaaaagatttttctccaagctcaaaattttgttcttgaactggatattgaATAttga
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| Protein seq | MDTMSDNTSHNILSQVNGSSQIVITDSKVQKLGSSANYVKYYKGTVKFGKGLRIQTKASVLAFTSCDGEAADALYVRLVAVNSPFTVKPLSYGRGIRRYREYTFLAVPPPSCLLSNYTDGFNDKTVSMKRFTEEFIKITGDIVRAIITLHCQGYWCSGLKGKHVCIYKMEKCTDAKIWSFCFAEKFENIIALNLFILVHVKSQPQVPSGDPEKDKIISELVKFMNASLQWAKAMPHWITQSSNYQAPTTETGLSFIDGLRDLFEHENEYIPEKVKQSQSKIQLVGRDPDLECQLRLNLEKIFLQAQNFVLELDIEY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0015350 | OsNaBo_11g0015350.01 | Chr11 | 20335172 | 20340205 | - | NAM | ||
| CDS seq | atggacacgatgtcagataatacaagccacaacattttgtcccaggtcaatggaagttctcaaatagtcataacagacagcaaggtccaaaaacttgggagttcagcaaactatgtgaaatattataagggtactgttaagtttgGtaaaggacttagaatacaaaccaaagcatctgtgcttgcatttacctcatgtgatggagaagctgcagatgccttgtatgtgcgacttgttgcagttaatagcccattcacagtcaaaccattgtcatatggcagaggtattcgaaggtacagggaatacacCttcttagctgttccaccgccaagttgtttgCTGtctaactacactgatggattcaatgataaaactgtcagtatgaagagattcactgaagaAttcatcaagataactgggGatattgttcgagcaattatcaccCttcattgccaaggttactggtgttctggtttgaaagggaaAcacgtatgcatctacaaAAtggagaagtgtactgatgcaaagatttggagtttttgctttgcagaaaaAtttgagaacataattgccctcaatttattcatcttggtacAtgtaaaaagtcaaccacaggttccatctggagatcctgaaaaggacaagatcattagcgaactggtgaaattcatgaatgctagtttacaatgggcgaaggctatgcctcactggataactcaaagttctaattatcaagcaccaaccacagaaactggtttatctttcattgatggactaagagacctatttgagcatgaaaacgagtatattccaGaaaagGttaaacaatcccaatcgaaaatccaattagttggtcgggatccagatCTggaatgtcagcttcgtttaaatttggaaaagatttttctccaagctcaaaattttgttcttgaactggatattgaATAttga
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| Protein seq | MDTMSDNTSHNILSQVNGSSQIVITDSKVQKLGSSANYVKYYKGTVKFGKGLRIQTKASVLAFTSCDGEAADALYVRLVAVNSPFTVKPLSYGRGIRRYREYTFLAVPPPSCLLSNYTDGFNDKTVSMKRFTEEFIKITGDIVRAIITLHCQGYWCSGLKGKHVCIYKMEKCTDAKIWSFCFAEKFENIIALNLFILVHVKSQPQVPSGDPEKDKIISELVKFMNASLQWAKAMPHWITQSSNYQAPTTETGLSFIDGLRDLFEHENEYIPEKVKQSQSKIQLVGRDPDLECQLRLNLEKIFLQAQNFVLELDIEY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.985247 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0517200 | RBH | 0.0 | 0.0 | 1.036952 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g31690 | RBH | 0.0 | 0.0 | 0.162621 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0517200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015320 | RBH | 0.0 | 0.0 | 0.548623 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015280 | RBH | 0.0 | 0.0 | 0.221010 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015230 | RBH | 0.0 | 0.0 | 2.173364 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015330 | RBH | 0.0 | 0.0 | 2.460763 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0292400 | SBH | 0.230818 | 1.6535065 | 33.372328 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015540 | RBH | 0.0 | 0.0 | 0.099605 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0303700 | SBH | 0.035869 | 1.3562585 | 10.6199575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015470 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015150 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014900 | RBH | 0.0 | 0.0 | 0.146618 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015420 | RBH | 0.0 | 0.0 | 0.0 |
