Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0014450 | OGI:11051480 | 1/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:19138034-19139390 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaccttctgtattcaaGgGTGGTTAGTTCGGGCAGGGAACCTACAGATGTGAGGTTTGGACATTTTTGTATATCCAATTTATTGAGTTTGGGCATAGTACCGACTGCTCCTAGTTTTGGGCAATCATATAGCGACAGTTTCAAGAGGGCGGGTTGAGTACGGATTGTATGTAAACCATTGCATACCCGAATTTCTAGATCCCTTAAAGTTCCCCCTGCAGGAACAATACCAATAACATTACAGTTACTCAATTTCAGGTAGTGCAAAGAAGAAAATCGATCCGATGGAAGAGAACTTAGCCGATTGCAATCACTGATTATCAGACTAGACAAGCATGGGAAATCTCCATCATCCACCCCAGACCACTTGGACCAGTGCAGCATATTGCTAAATTCCAATGTTTTCAATGATGGGAAGCCTTTATTGCCAGGAATACGGGTGTAAAACTCCCTTCCAATGTGTTCCATGTAATACATCCTCCCAATGCTGACATACTTGAGGAAAGGTAGCTCACCAAGTGTTGGAACACATTGTTGGGTTACCTTATCTGTACCGTAAAGTACTATGTTAGTCAGCTTTGAAAATGAAGCATCACCCAGCCAGCTGGGATAGCTCTGACAATTGTAACCATATATTGTCAGTCTTCTTAGTCCTTCATGTGGTCTCAAGCTCTCCAGTATTTGATTGTGTGGTACTATAGGATATTTAGGTTGCTGCATGTATTGGTACTGCAAATTTTCATACCGCACCTCTTTAGGAGTGAAGTTCAGGCCCAATTGCAGCGGCATGTGCAGGCACTCCACTTCACTAAAGTCTAATTGTAGAAACTGGAGGTGCTTTTTATTCATTAATTGAGCTTCGATTGCATCTTGGACATGAGATAAATTACCCAATCCGCTTATACGCAGTTTACCCTTTTTTTTGTTCAGGTTCTTCAGCTCTCGTAAGTTAAaaactgccaccacatctacagatatatacgtgaggaaaggtgtgtaggttgattaggggataaattccgctgggtgcattccaTggcccttcaagatggcgtagtagtttcatgctactgatgtaccttggtaatgcctcatgaaggtttctatcagataatgcaaggacccgcagatttttgcatatcgaaaaaagtagctctaggttagtaacttcatccctccccaacccaatgatagcccacaaagggtgtgaggaagctgagaactgaacagatGtatgATAatcaattatggacatAaaccgagcgttttgtggaatttcaactggtttgtcaccttcaagcctaaagaactcgttcccggaaagatggcatgcgagatcatgaattagatcatgcat
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| CDS seq | atgcatgatctaattcatgatctcgcatgccatctttccgggaacgagttctttaggcttgaaggtgacaaaccagttgaaattccacaaaacgctcggttTatgtccataattgatTATcataCatctgttcagttctcagcttcctcacaccctttgtgggctatcattgggttggggagggatgaagttactaacctagagctacttttttcgatatgcaaaaatctgcgggtccttgcattatctgatagaaaccttcatgaggcattaccaaggtacatcagtagcatgaaactactacgccatcttgaagggccAtggaatgcacccagcggaatttatcccctaatcaacctacacacctttcctcacAACCTGAACAAAAAAAAGGGTAAACTGCGTATAAGCGGATTGGGTAATTTATCTCATGTCCAAGATGCAATCGAAGCTCAATTAATGAATAAAAAGCACCTCCAGTTTCTACAATTAGACTTTAGTGAAGTGGAGTGCCTGCACATGCCGCTGCAATTGGGCCTGAACTTCACTCCTAAAGAGGTGCGGTATGAAAATTTGCAGTACCAATACATGCAGCAACCTAAATATCCTATAGTACCACACAATCAAATACTGGAGAGCTTGAGACCACATGAAGGACTAAGAAGACTGACAATATATGGTTACAATTGTCAGAGCTATCCCAGCTGGCTGGGTGATGCTTCATTTTCAAAGCTGACTAACATAGTACTTTACGGTACAGATAAGGTAACCCAACAATGTGTTCCAACACTTGGTGAGCTACCTTTCCTCAAGTATGTCAGCATTGGGAGGATGTATTACATGGAACACATTGGAAGGGAGTTTTACACCCGTATTCCTGGCAATAAAGGCTTCCCATCATTGAAAACATTGGAATTTAGCAATATGCTGCACTGGTCCAAGTGGTCTGGGGTGGATGATGGAGATTTCCCATGCTTGTCTAGTCTGATAATCAGTGATTGCAATCGGCTAAGTTCTCTTCCATCGGATCGATTTTCTTCTTTGCACTACCTGAAATTGAGTAACTGTAATGTTATTGGTATTGTTCCTGCAGGGGGAACTTTAAGGGATCTAGAAATTCGGGTATGCAATGGTTTACATACAATCCGTACTCAACCCGCCCTCTTGAAACTGTCGCTATATGATTGCCCAAAACTAGGAGCAGTCGGTACTATGCCCAAACTCAATAAATTGGATATACAAAAATGTCCAAACCTCACATCTGTAGGTTCCCTGCCCGAACTAACCACcCttgaatacagaaggtaa
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| Protein seq | MHDLIHDLACHLSGNEFFRLEGDKPVEIPQNARFMSIIDYHTSVQFSASSHPLWAIIGLGRDEVTNLELLFSICKNLRVLALSDRNLHEALPRYISSMKLLRHLEGPWNAPSGIYPLINLHTFPHNLNKKKGKLRISGLGNLSHVQDAIEAQLMNKKHLQFLQLDFSEVECLHMPLQLGLNFTPKEVRYENLQYQYMQQPKYPIVPHNQILESLRPHEGLRRLTIYGYNCQSYPSWLGDASFSKLTNIVLYGTDKVTQQCVPTLGELPFLKYVSIGRMYYMEHIGREFYTRIPGNKGFPSLKTLEFSNMLHWSKWSGVDDGDFPCLSSLIISDCNRLSSLPSDRFSSLHYLKLSNCNVIGIVPAGGTLRDLEIRVCNGLHTIRTQPALLKLSLYDCPKLGAVGTMPKLNKLDIQKCPNLTSVGSLPELTTLEYRR |
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| Function | Putative disease resistance protein At3g14460 [UniProtKB/Swiss-Prot:Q9LRR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0014450 | OsNaBo_11g0014450.01 | Chr11 | 19138034 | 19139390 | - | NAM | ||
| CDS seq | atgcatgatctaattcatgatctcgcatgccatctttccgggaacgagttctttaggcttgaaggtgacaaaccagttgaaattccacaaaacgctcggttTatgtccataattgatTATcataCatctgttcagttctcagcttcctcacaccctttgtgggctatcattgggttggggagggatgaagttactaacctagagctacttttttcgatatgcaaaaatctgcgggtccttgcattatctgatagaaaccttcatgaggcattaccaaggtacatcagtagcatgaaactactacgccatcttgaagggccAtggaatgcacccagcggaatttatcccctaatcaacctacacacctttcctcacAACCTGAACAAAAAAAAGGGTAAACTGCGTATAAGCGGATTGGGTAATTTATCTCATGTCCAAGATGCAATCGAAGCTCAATTAATGAATAAAAAGCACCTCCAGTTTCTACAATTAGACTTTAGTGAAGTGGAGTGCCTGCACATGCCGCTGCAATTGGGCCTGAACTTCACTCCTAAAGAGGTGCGGTATGAAAATTTGCAGTACCAATACATGCAGCAACCTAAATATCCTATAGTACCACACAATCAAATACTGGAGAGCTTGAGACCACATGAAGGACTAAGAAGACTGACAATATATGGTTACAATTGTCAGAGCTATCCCAGCTGGCTGGGTGATGCTTCATTTTCAAAGCTGACTAACATAGTACTTTACGGTACAGATAAGGTAACCCAACAATGTGTTCCAACACTTGGTGAGCTACCTTTCCTCAAGTATGTCAGCATTGGGAGGATGTATTACATGGAACACATTGGAAGGGAGTTTTACACCCGTATTCCTGGCAATAAAGGCTTCCCATCATTGAAAACATTGGAATTTAGCAATATGCTGCACTGGTCCAAGTGGTCTGGGGTGGATGATGGAGATTTCCCATGCTTGTCTAGTCTGATAATCAGTGATTGCAATCGGCTAAGTTCTCTTCCATCGGATCGATTTTCTTCTTTGCACTACCTGAAATTGAGTAACTGTAATGTTATTGGTATTGTTCCTGCAGGGGGAACTTTAAGGGATCTAGAAATTCGGGTATGCAATGGTTTACATACAATCCGTACTCAACCCGCCCTCTTGAAACTGTCGCTATATGATTGCCCAAAACTAGGAGCAGTCGGTACTATGCCCAAACTCAATAAATTGGATATACAAAAATGTCCAAACCTCACATCTGTAGGTTCCCTGCCCGAACTAACCACcCttgaatacagaaggtaa
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| Protein seq | MHDLIHDLACHLSGNEFFRLEGDKPVEIPQNARFMSIIDYHTSVQFSASSHPLWAIIGLGRDEVTNLELLFSICKNLRVLALSDRNLHEALPRYISSMKLLRHLEGPWNAPSGIYPLINLHTFPHNLNKKKGKLRISGLGNLSHVQDAIEAQLMNKKHLQFLQLDFSEVECLHMPLQLGLNFTPKEVRYENLQYQYMQQPKYPIVPHNQILESLRPHEGLRRLTIYGYNCQSYPSWLGDASFSKLTNIVLYGTDKVTQQCVPTLGELPFLKYVSIGRMYYMEHIGREFYTRIPGNKGFPSLKTLEFSNMLHWSKWSGVDDGDFPCLSSLIISDCNRLSSLPSDRFSSLHYLKLSNCNVIGIVPAGGTLRDLEIRVCNGLHTIRTQPALLKLSLYDCPKLGAVGTMPKLNKLDIQKCPNLTSVGSLPELTTLEYRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.391317 | 0.0 | 0.600088 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492300 | SBH | 0.187514 | 0.0 | 0.229153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29970 | SBH | 0.324290 | 0.623488 | 0.054654 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014460 | SBH | 0.513122 | 0.0 | 0.730233 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014430 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014390 | SBH | 2.208534 | 0.0 | 0.614534 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014180 | SBH | 0.315135 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014460 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0270700 | SBH | 1.891059 | 0.078191 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014690 | SBH | 0.262135 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0284000 | SBH | 2.2550075 | 0.2038645 | 0.015422 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014600 | SBH | 0.190382 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014590 | SBH | 0.756761 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014230 | SBH | 1.650088 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014070 | SBH | 0.337268 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014330 | SBH | 0.869371 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014210 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014400 | SBH | 0.321590 | 0.0 | 0.963405 |
