Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_11g0492300 OGI:11051570 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr11:17434258-17436861
Gene Symbol -
DNA seq

TCAGTCATGCATGGAATCTATTGTAATCAGGTTTCGACAATGTTGTATATTAGAAGTTTGAAGTTTAGGCATGAAACCCACTGCAGTCAGCTTTGGACATTTAAATATCTCTAATGTGTCCAGTTCAGGCATGGAACTGACTACACTCAGTCTCGGGCAATCCTTTAGCTGCAGCTTTAGGAGTGAGGATTGGGTAGGGAGAGTATATAGGCCATAGCACCCTCCAATGCATAGCTTCTTAATGGTTCCACCTGCAGGAATGGTATCGATACCATCACATTCATCCAATGTCAGTGTGCCCAAAGAAGGAAATCGATCCAATGGAAGAGCTCGCAGTTTATAGACCGTTCTGAGTGACAGTGTTTCCATCAAGGGGAAATCTCCATAATCTACACCGGTCCACTCATTCCACCATGGTATATATGAAAATTCCAAGCTTGTTAATGATGGGAAGCCTTTGATTCCAGGAGCATGGCTGCAAAACTCCCGGCCAATGTGTTCCAGATAATACATGCTACTAATCTTGAGAGACTTGAGGGCAGGTAGCTCGCCAAGTGTTGGAACACGTTGTTGCCTTACCCACTTTCTACGCGCCGATATTACTAATACGGTTAACCTTGAAAATGAAGCATTACCGAGCCAATTAGGGTAGCTCTGACAATCGTAATCTTCTATTATCAGATTTATTAAGCCTTCATGTGGTCTCAGGCTCTCAAGTATTTCATTATGAGATACTGTAACATATTCAAGTTGCTGCACGCTCTGGTACCGAAATTTTTTGAACCCTTCTTCAAATGTAAAATCCAATTCCAATTGCTCGTGGGATACTTTTTCATATTGTTGCAGCAATTGTTGACATTGCTCCTTTTGGCACTCCTTCTCATCAGAAAAGTTCAATTCTAGTAAATGGAGGTGCTTCTTACTCACAAGTTGAACTTCATTTGCATCTTCTGTATGAGATAAATTACCTAGTCCTCTTATACGCAGCTCCCTTAATTTGTTCAGGTTCTTCAGCTCACTCAAATTAAAACTGCAACCACATCTCCTGATACGTATGTCACGCAAAGTGTGTAGGTTAATTAGGTTACCAATCCCATTTGGTGCACACTCTAGCTCTTTAAGATAGTCAACCCTGTCTGTAGGCCCCAAGTTGCAAATTAATTTAAGATAGTCTCCATCAAGTGGAAGTTCCAAACGGCGAAGTAATTTCAGGCCACTGATGTATCTTGGTAATGCCTTACCAATGTTGCTATAAGATAAGCTAAGGACCCGCAAATTTTTGCAGTACAAAAAGAAATGTTCTGGATTATTAACTCTGGAATAGTTTTTCACCCCAAACACAATGATGGCCCACAGAGGGTGCGATGTAACTGAAAATTGCACAGACGTATCACAATTGTGTATGGACATAAATCGAGTATTTTCTGGAATTTGAACCGGTTTGTCACCTTCAAGTCTAAAGAACTCATTACCAGAAAGATGGCATGCGAGATCATGGATTAGATCATGCATGATGCAAGAACCCGAAAATAATTGAAGAAATGACCTTTGTACTAGTTCATCAAAATATCGGTTTCCATTTTTGTCCCCATCGTTCCTTTCATCATCCTTAAGCATATCAAGCAATTTCCATAGCCAAATAACCTCAGATTTGCCACGTAAACGACCTTTTGGGAACAGACAAAGGGCAAGGAAACATTGTTTTAAGTGCACGGGCATGTTCTTGTAGCTCAGCTTCAAGGCTGGTAAAACCTCGCTCTGTGCTTTATCTAAATCCCATAGATCACTTTCAAGGATATCTATCCATCTACTTTCATGAGTTTCATATCTTAACATGCTCCCTAGAGTTTTGATTGCGAGTGGTAACCTGTCACACTTTTCAACAATCTTCTTGGCAATGTCTACAAGATTTCCTTGAATGGCATTCTCAGGTGTTGTAACCGTTCTTTTAAACAACGTCCAGCTCTCCTGGGGGCTTAAGTGGTTCATGGAATAGTGTGGCATTGTCTGCACCAATCTTGCTACTGGCAAATTACGAGTGGTTACTAAAATCTTACACTGTTGGGCAGCCAACATTGGGTCTTGGAATGCTTCCCAACAATCCATTCTTTCATTCCATACATCATCCAACACAAGAAAAATTCTCTTCCCTTTTATCTTCTTGACCAACTTATTCCGAGGGTCGACCAATTCTGATAATTCCTTGCTATTTTCTTTTGGAGAGGATAATTCATTGCTCAGCTCTTCTATAGAAACAGCAATTTTTTCCATTAAGCTTTTTGGCTCAAAATGGTCGGACACATAAACCCATGCACGGACATCAAATGATTGGCACATAGTTTGGTCATTGTATACAAGCTGTGCTAGAGTTGTTTTACCCAAACCCCCCGTACCAACAATGGCCAAGACAGACAAGTGACTCGCAACATTGCTACCTTCTCCAAACATCAACTTTTCTATAACTTTCTCCCTGTCTGACTCCCTTCCAACAATGCTCTCTTTAACTACAAAATAGCTGGTGGGACGTACGCATTCGATACCAGGGGCAGTCCGGCGCACCCCATCATTATCAGATATGCTAAAGTATTTATAGTAGACTTTCAT

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CDS seq

ATGAAAGTCTACTATAAATACTTTAGCATATCTGATAATGATGGGGTGCGCCGGACTGCCCCTGGTATCGAATGCGTACGTCCCACCAGCTATTTTGTAGTTAAAGAGAGCATTGTTGGAAGGGAGTCAGACAGGGAGAAAGTTATAGAAAAGTTGATGTTTGGAGAAGGTAGCAATGTTGCGAGTCACTTGTCTGTCTTGGCCATTGTTGGTACGGGGGGTTTGGGTAAAACAACTCTAGCACAGCTTGTATACAATGACCAAACTATGTGCCAATCATTTGATGTCCGTGCATGGGTTTATGTGTCCGACCATTTTGAGCCAAAAAGCTTAATGGAAAAAATTGCTGTTTCTATAGAAGAGCTGAGCAATGAATTATCCTCTCCAAAAGAAAATAGCAAGGAATTATCAGAATTGGTCGACCCTCGGAATAAGTTGGTCAAGAAGATAAAAGGGAAGAGAATTTTTCTTGTGTTGGATGATGTATGGAATGAAAGAATGGATTGTTGGGAAGCATTCCAAGACCCAATGTTGGCTGCCCAACAGTGTAAGATTTTAGTAACCACTCGTAATTTGCCAGTAGCAAGATTGGTGCAGACAATGCCACACTATTCCATGAACCACTTAAGCCCCCAGGAGAGCTGGACGTTGTTTAAAAGAACGGTTACAACACCTGAGAATGCCATTCAAGGAAATCTTGTAGACATTGCCAAGAAGATTGTTGAAAAGTGTGACAGGTTACCACTCGCAATCAAAACTCTAGGGAGCATGTTAAGATATGAAACTCATGAAAGTAGATGGATAGATATCCTTGAAAGTGATCTATGGGATTTAGATAAAGCACAGAGCGAGGTTTTACCAGCCTTGAAGCTGAGCTACAAGAACATGCCCGTGCACTTAAAACAATGTTTCCTTGCCCTTTGTCTGTTCCCAAAAGGTCGTTTACGTGGCAAATCTGAGGTTATTTGGCTATGGAAATTGCTTGATATGCTTAAGGATGATGAAAGGAACGATGGGGACAAAAATGGAAACCGATATTTTGATGAACTAGTACAAAGGTCATTTCTTCAATTATTTTCGGGTTCTTGCATCATGCATGATCTAATCCATGATCTCGCATGCCATCTTTCTGGTAATGAGTTCTTTAGACTTGAAGGTGACAAACCGGTTCAAATTCCAGAAAATACTCGATTTATGTCCATACACAATTGTGATACGTCTGTGCAATTTTCAGTTACATCGCACCCTCTGTGGGCCATCATTGTGTTTGGGGTGAAAAACTATTCCAGAGTTAATAATCCAGAACATTTCTTTTTGTACTGCAAAAATTTGCGGGTCCTTAGCTTATCTTATAGCAACATTGGTAAGGCATTACCAAGATACATCAGTGGCCTGAAATTACTTCGCCGTTTGGAACTTCCACTTGATGGAGACTATCTTAAATTAATTTGCAACTTGGGGCCTACAGACAGGGTTGACTATCTTAAAGAGCTAGAGTGTGCACCAAATGGGATTGGTAACCTAATTAACCTACACACTTTGCGTGACATACGTATCAGGAGATGTGGTTGCAGTTTTAATTTGAGTGAGCTGAAGAACCTGAACAAATTAAGGGAGCTGCGTATAAGAGGACTAGGTAATTTATCTCATACAGAAGATGCAAATGAAGTTCAACTTGTGAGTAAGAAGCACCTCCATTTACTAGAATTGAACTTTTCTGATGAGAAGGAGTGCCAAAAGGAGCAATGTCAACAATTGCTGCAACAATATGAAAAAGTATCCCACGAGCAATTGGAATTGGATTTTACATTTGAAGAAGGGTTCAAAAAATTTCGGTACCAGAGCGTGCAGCAACTTGAATATGTTACAGTATCTCATAATGAAATACTTGAGAGCCTGAGACCACATGAAGGCTTAATAAATCTGATAATAGAAGATTACGATTGTCAGAGCTACCCTAATTGGCTCGGTAATGCTTCATTTTCAAGGTTAACCGTATTAGTAATATCGGCGCGTAGAAAGTGGGTAAGGCAACAACGTGTTCCAACACTTGGCGAGCTACCTGCCCTCAAGTCTCTCAAGATTAGTAGCATGTATTATCTGGAACACATTGGCCGGGAGTTTTGCAGCCATGCTCCTGGAATCAAAGGCTTCCCATCATTAACAAGCTTGGAATTTTCATATATACCATGGTGGAATGAGTGGACCGGTGTAGATTATGGAGATTTCCCCTTGATGGAAACACTGTCACTCAGAACGGTCTATAAACTGCGAGCTCTTCCATTGGATCGATTTCCTTCTTTGGGCACACTGACATTGGATGAATGTGATGGTATCGATACCATTCCTGCAGGTGGAACCATTAAGAAGCTATGCATTGGAGGGTGCTATGGCCTATATACTCTCCCTACCCAATCCTCACTCCTAAAGCTGCAGCTAAAGGATTGCCCGAGACTGAGTGTAGTCAGTTCCATGCCTGAACTGGACACATTAGAGATATTTAAATGTCCAAAGCTGACTGCAGTGGGTTTCATGCCTAAACTTCAAACTTCTAATATACAACATTGTCGAAACCTGATTACAATAGATTCCATGCATGACTGA

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Protein seq

MKVYYKYFSISDNDGVRRTAPGIECVRPTSYFVVKESIVGRESDREKVIEKLMFGEGSNVASHLSVLAIVGTGGLGKTTLAQLVYNDQTMCQSFDVRAWVYVSDHFEPKSLMEKIAVSIEELSNELSSPKENSKELSELVDPRNKLVKKIKGKRIFLVLDDVWNERMDCWEAFQDPMLAAQQCKILVTTRNLPVARLVQTMPHYSMNHLSPQESWTLFKRTVTTPENAIQGNLVDIAKKIVEKCDRLPLAIKTLGSMLRYETHESRWIDILESDLWDLDKAQSEVLPALKLSYKNMPVHLKQCFLALCLFPKGRLRGKSEVIWLWKLLDMLKDDERNDGDKNGNRYFDELVQRSFLQLFSGSCIMHDLIHDLACHLSGNEFFRLEGDKPVQIPENTRFMSIHNCDTSVQFSVTSHPLWAIIVFGVKNYSRVNNPEHFFLYCKNLRVLSLSYSNIGKALPRYISGLKLLRRLELPLDGDYLKLICNLGPTDRVDYLKELECAPNGIGNLINLHTLRDIRIRRCGCSFNLSELKNLNKLRELRIRGLGNLSHTEDANEVQLVSKKHLHLLELNFSDEKECQKEQCQQLLQQYEKVSHEQLELDFTFEEGFKKFRYQSVQQLEYVTVSHNEILESLRPHEGLINLIIEDYDCQSYPNWLGNASFSRLTVLVISARRKWVRQQRVPTLGELPALKSLKISSMYYLEHIGREFCSHAPGIKGFPSLTSLEFSYIPWWNEWTGVDYGDFPLMETLSLRTVYKLRALPLDRFPSLGTLTLDECDGIDTIPAGGTIKKLCIGGCYGLYTLPTQSSLLKLQLKDCPRLSVVSSMPELDTLEIFKCPKLTAVGFMPKLQTSNIQHCRNLITIDSMHD

Function Putative disease resistance RPP13-like protein 1 [UniProtKB/Swiss-Prot:Q9LRR4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_11g0492300 OsNip_11t0492300-00 Chr11 17434258 17436861 - RAP2018-11-26
CDS seq

ATGAAAGTCTACTATAAATACTTTAGCATATCTGATAATGATGGGGTGCGCCGGACTGCCCCTGGTATCGAATGCGTACGTCCCACCAGCTATTTTGTAGTTAAAGAGAGCATTGTTGGAAGGGAGTCAGACAGGGAGAAAGTTATAGAAAAGTTGATGTTTGGAGAAGGTAGCAATGTTGCGAGTCACTTGTCTGTCTTGGCCATTGTTGGTACGGGGGGTTTGGGTAAAACAACTCTAGCACAGCTTGTATACAATGACCAAACTATGTGCCAATCATTTGATGTCCGTGCATGGGTTTATGTGTCCGACCATTTTGAGCCAAAAAGCTTAATGGAAAAAATTGCTGTTTCTATAGAAGAGCTGAGCAATGAATTATCCTCTCCAAAAGAAAATAGCAAGGAATTATCAGAATTGGTCGACCCTCGGAATAAGTTGGTCAAGAAGATAAAAGGGAAGAGAATTTTTCTTGTGTTGGATGATGTATGGAATGAAAGAATGGATTGTTGGGAAGCATTCCAAGACCCAATGTTGGCTGCCCAACAGTGTAAGATTTTAGTAACCACTCGTAATTTGCCAGTAGCAAGATTGGTGCAGACAATGCCACACTATTCCATGAACCACTTAAGCCCCCAGGAGAGCTGGACGTTGTTTAAAAGAACGGTTACAACACCTGAGAATGCCATTCAAGGAAATCTTGTAGACATTGCCAAGAAGATTGTTGAAAAGTGTGACAGGTTACCACTCGCAATCAAAACTCTAGGGAGCATGTTAAGATATGAAACTCATGAAAGTAGATGGATAGATATCCTTGAAAGTGATCTATGGGATTTAGATAAAGCACAGAGCGAGGTTTTACCAGCCTTGAAGCTGAGCTACAAGAACATGCCCGTGCACTTAAAACAATGTTTCCTTGCCCTTTGTCTGTTCCCAAAAGGTCGTTTACGTGGCAAATCTGAGGTTATTTGGCTATGGAAATTGCTTGATATGCTTAAGGATGATGAAAGGAACGATGGGGACAAAAATGGAAACCGATATTTTGATGAACTAGTACAAAGGTCATTTCTTCAATTATTTTCGGGTTCTTGCATCATGCATGATCTAATCCATGATCTCGCATGCCATCTTTCTGGTAATGAGTTCTTTAGACTTGAAGGTGACAAACCGGTTCAAATTCCAGAAAATACTCGATTTATGTCCATACACAATTGTGATACGTCTGTGCAATTTTCAGTTACATCGCACCCTCTGTGGGCCATCATTGTGTTTGGGGTGAAAAACTATTCCAGAGTTAATAATCCAGAACATTTCTTTTTGTACTGCAAAAATTTGCGGGTCCTTAGCTTATCTTATAGCAACATTGGTAAGGCATTACCAAGATACATCAGTGGCCTGAAATTACTTCGCCGTTTGGAACTTCCACTTGATGGAGACTATCTTAAATTAATTTGCAACTTGGGGCCTACAGACAGGGTTGACTATCTTAAAGAGCTAGAGTGTGCACCAAATGGGATTGGTAACCTAATTAACCTACACACTTTGCGTGACATACGTATCAGGAGATGTGGTTGCAGTTTTAATTTGAGTGAGCTGAAGAACCTGAACAAATTAAGGGAGCTGCGTATAAGAGGACTAGGTAATTTATCTCATACAGAAGATGCAAATGAAGTTCAACTTGTGAGTAAGAAGCACCTCCATTTACTAGAATTGAACTTTTCTGATGAGAAGGAGTGCCAAAAGGAGCAATGTCAACAATTGCTGCAACAATATGAAAAAGTATCCCACGAGCAATTGGAATTGGATTTTACATTTGAAGAAGGGTTCAAAAAATTTCGGTACCAGAGCGTGCAGCAACTTGAATATGTTACAGTATCTCATAATGAAATACTTGAGAGCCTGAGACCACATGAAGGCTTAATAAATCTGATAATAGAAGATTACGATTGTCAGAGCTACCCTAATTGGCTCGGTAATGCTTCATTTTCAAGGTTAACCGTATTAGTAATATCGGCGCGTAGAAAGTGGGTAAGGCAACAACGTGTTCCAACACTTGGCGAGCTACCTGCCCTCAAGTCTCTCAAGATTAGTAGCATGTATTATCTGGAACACATTGGCCGGGAGTTTTGCAGCCATGCTCCTGGAATCAAAGGCTTCCCATCATTAACAAGCTTGGAATTTTCATATATACCATGGTGGAATGAGTGGACCGGTGTAGATTATGGAGATTTCCCCTTGATGGAAACACTGTCACTCAGAACGGTCTATAAACTGCGAGCTCTTCCATTGGATCGATTTCCTTCTTTGGGCACACTGACATTGGATGAATGTGATGGTATCGATACCATTCCTGCAGGTGGAACCATTAAGAAGCTATGCATTGGAGGGTGCTATGGCCTATATACTCTCCCTACCCAATCCTCACTCCTAAAGCTGCAGCTAAAGGATTGCCCGAGACTGAGTGTAGTCAGTTCCATGCCTGAACTGGACACATTAGAGATATTTAAATGTCCAAAGCTGACTGCAGTGGGTTTCATGCCTAAACTTCAAACTTCTAATATACAACATTGTCGAAACCTGATTACAATAGATTCCATGCATGACTGA

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Protein seq

MKVYYKYFSISDNDGVRRTAPGIECVRPTSYFVVKESIVGRESDREKVIEKLMFGEGSNVASHLSVLAIVGTGGLGKTTLAQLVYNDQTMCQSFDVRAWVYVSDHFEPKSLMEKIAVSIEELSNELSSPKENSKELSELVDPRNKLVKKIKGKRIFLVLDDVWNERMDCWEAFQDPMLAAQQCKILVTTRNLPVARLVQTMPHYSMNHLSPQESWTLFKRTVTTPENAIQGNLVDIAKKIVEKCDRLPLAIKTLGSMLRYETHESRWIDILESDLWDLDKAQSEVLPALKLSYKNMPVHLKQCFLALCLFPKGRLRGKSEVIWLWKLLDMLKDDERNDGDKNGNRYFDELVQRSFLQLFSGSCIMHDLIHDLACHLSGNEFFRLEGDKPVQIPENTRFMSIHNCDTSVQFSVTSHPLWAIIVFGVKNYSRVNNPEHFFLYCKNLRVLSLSYSNIGKALPRYISGLKLLRRLELPLDGDYLKLICNLGPTDRVDYLKELECAPNGIGNLINLHTLRDIRIRRCGCSFNLSELKNLNKLRELRIRGLGNLSHTEDANEVQLVSKKHLHLLELNFSDEKECQKEQCQQLLQQYEKVSHEQLELDFTFEEGFKKFRYQSVQQLEYVTVSHNEILESLRPHEGLINLIIEDYDCQSYPNWLGNASFSRLTVLVISARRKWVRQQRVPTLGELPALKSLKISSMYYLEHIGREFCSHAPGIKGFPSLTSLEFSYIPWWNEWTGVDYGDFPLMETLSLRTVYKLRALPLDRFPSLGTLTLDECDGIDTIPAGGTIKKLCIGGCYGLYTLPTQSSLLKLQLKDCPRLSVVSSMPELDTLEIFKCPKLTAVGFMPKLQTSNIQHCRNLITIDSMHD

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.187514 0.0 0.229153

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g29990 RBH 0.000000 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os11g0492300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0014500 RBH 0.373027 0.0 0.207665
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0014460 RBH 0.083653 0.000000 0.225693
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0014400 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0014190 RBH 0.060028 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0014470 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0270700 SBH 1.891059 0.078191 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0014740 RBH 0.094940 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0284800 RBH 1.0996345 0.007418 0.014224
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0014660 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0014640 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0014280 RBH 0.000000 1.340481 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0014110 RBH 0.000000 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0014450 RBH 0.000000 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G014190 RBH 0.000000 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0014510 RBH 0.622459 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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