Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0013880 | OGI:11049040 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:18439297-18442450 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttactcttgtgtagttttgaatcgttcagccaaagatgcatcctgtgatatcagcgtttggtaccagcttttatcaccattatgtactaactcaacattcttcagtcctggagcacttgcaccatggattgggaaccctttcagggagtggcaacctcccagcttgagacttactagtgatttccaggagaatctcatgatttcacctccgaccttgtagaagtactccattccaggtaaatccacaagagagagatgagttagactaggaaatgcttctggatccaacgagtcaccgacatctgcaggatgtgccggatatctggtatcagcactgacaatttcgtttccaacagtttcttccatttcaacatgttcggcaacaatctcctccatcctgtaatcatcggccacgacctccttcagagccacgttgcttttcagtgtcaacctctcaagattactaagcatagcagctactcttgcaacaaggacaaagtcaagttttctgcagcgctgaacattgagttcctttaggtttggacagatatgctgtggtggtggatttccttcccaactccaaatgctgacagtttcttgcaagttgattaaacggattatcttcaagcaaggaaacgcagacaacttcttacttgtgctctggaagtggaacacagacctcaagctatcgcactttgttatgtggagttcttctaggtagtgaaatacagattgtttctggtcgttacaccagacaaggtgtgtcaggccattgcaattggtgagtcgcagaatcttcagaacactaaatgtactgatgcagcttagtgcagtgaaatgcagcactgttgattcttcctcaaagcagctgtcaagaattaagttttctgtttcgcctagcaatgcatctaccacccagtctcctatggtggtgactcccttgagatatagattctttcggtgtgacttgaccagagtaatccattgcaactcggtgtaaatgatataggacttcaacttcctcacaaaatcaatcctgaagatctgatcatttagtgagagaacactgacatctttgataaacaattgcaagcatctgagccgtgttaagtcatcaatctcaatcatgagatatgctgttacctttgaagtgtcaacatacagttcttccaagtaacgtagcttagaaattagtccctccggtatctcaagggattccattgatgataaatccaatagcctaagcttctttagatttcccaattgttctggaagtgaatcaattgaacaaccagctagactaagtactcgcaagttctccaagctactgactaaccaaatgcctctagatacctttgaatcatttagacagagtgttcggaccgctgctaggtctttagtagagagaggcagagaatggatggaagaattactcatatctaagacagccagctgctgcatgctttgaaagaagttctctggaagttcatgcagacttgagttattcctgagcagtaagtttctcgatgctggtatttatcaatgatactctcttgcacgttttaaatttctcatttattttgtcctcagcaatttcatatggtgcagcaaattgttcacagaatctcgaggcaataaaaactgccacatctctcactatattgtgcatcatgacacatttggtatcattaattggcaacagcagaaaagagtcttctatatctgtgatcctcatgtgtaattttctcctggtttcctctaaagtattgaactcgttgaagatgtcctcccctgtccagtaacttgttagctcatttttacttattttgtgtcctccaggaaacaagctacacaacaagaacaaagattttttctcatccccttcaagatggttgtaactggattccaagggcatgtatatcttttgcaacacttcagacttctcaagagggtaggaactctcaagctctgacaaagcacactcccagtacctcttgtcctttccacacaggactgtcccgattacatcgagtgcaagaggtaaaccgccacatcttttcgctatttttccttttacggtttctgttccagatatgtcaggaactactgctttgaatttgaaaagttcccatgattctttctcagttaagaagtccaccgaaatctctacttgtgctcccatgtacttgcaaacttcgattttttgtgtagtgacaattactttgcattcctcgactggtatgcccatcttccagaggtccaagctttcccaggcgttgtccaagaacaggatagacttcttttccttgagtttttctgccagaaaagctgctctatgagcattgagttttgcactgtatatcattcccaattgcttggcgaaactgTttttaatctcctctagtcctggcttctctctaaggtcaactgttatgacttcatcaaattccttttgtgttttcatcttctccaaaattgcagccaccaaaagacttttacctatgccacaaggtccataaacacctactatgtgcactttatcttctttgagtgcgttaattatctggctcacaatttcatttctagagccgaattccatcacattatttcgaagcatcagagtgtttggtggtcttcggcaaggtacaagcaaaaaaagatcattcctgtgcttaagcagttcttcagctcgagctagtagttttatggctaatgcgccaatctgcagtcggcgaattgggttcatgacctctattttctttctagcTttttgtgtggcatctgcatcatgcagatcatgcctggctggatttttacccttgcattcaacaaccaaatctttagcttgagttgctatttcttcaacatctaatatccattgttttgtggcttcggatgctactctgcattcataatttgcatgctcaatgatggtctccatgtctgtcttatctcgaagcagtgaatctaccttcaccttcatcttgtcgacttcagcctcacattttactaagtgggttaccctggcccatagatagctgcccatactcttcacgggtccctgagccatatctattccagatttggttacgccagcaatggccgctgtctccacaggcctggagcaatgaatcatgtcagataagagtttcat
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| CDS seq | atgaaactcttatctgacatgattcattgctccaggcctgtggagacagcggccattgctggcgtaaccaaatctggaatagatatggctcagggacccgtgaagagtatgggcagctatctatgggccagggtaacccacttagtaaaatgtgaggctgaagtcgacaagatgaaggtgaaggtagattcactgcttcgagataagacagacatggagaccatcattgagcatgcaaattatgaatgcagagtagcatccgaagccacaaaacaatggatattagatgttgaagaaatagcaactcaagctaaagatttggttgttgaatgcaagggtaaaaatccagccaggcatgatctgcatgatgcagatgccacacaaaaAgctagaaagaaaatagaggtcatgaacccaattcgccgactgcagattggcgcattagccataaaactactagctcgagctgaagaactgcttaagcacaggaatgatctttttttgcttgtaccttgccgaagaccaccaaacactctgatgcttcgaaataatgtgatggaattcggctctagaaatgaaattgtgagccagataattaacgcactcaaagaagataaagtgcacatagtaggtgtttatggaccttgtggcataggtaaaagtcttttggtggctgcaattttggagaagatgaaaacacaaaaggaatttgatgaagtcataacagttgaccttagagagaagccaggactagaggagattaaaaAcagtttcgccaagcaattgggaatgatatacagtgcaaaactcaatgctcatagagcagcttttctggcagaaaaactcaaggaaaagaagtctatcctgttcttggacaacgcctgggaaagcttggacctctggaagatgggcataccagtcgaggaatgcaaagtaattgtcactacacaaaaaatcgaagtttgcaagtacatgggagcacaagtagagatttcggtggacttcttaactgagaaagaatcatgggaacttttcaaattcaaagcagtagttcctgacatatctggaacagaaaccgtaaaaggaaaaatagcgaaaagatgtggcggtttacctcttgcactcgatgtaatcgggacagtcctgtgtggaaaggacaagaggtactgggagtgtgctttgtcagagcttgagagttcctaccctcttgagaagtctgaagtgttgcaaaagatatacatgcccttggaatccagttacaaccatcttgaaggggatgagaaaaaatctttgttcttgttgtgtagcttgtttcctggaggacacaaaataagtaaaaatgagctaacaagttactggacaggggaggacatcttcaacgagttcaatactttagaggaaaccaggagaaaattacacatgaggatcacagatatagaagactcttttctgctgttgccaattaatgataccaaatgtgtcatgatgcacaatatagtatctagaggcatttggttagtcagtagcttggagaacttgcgagtacttagtctagctggttgttcaattgattcacttccagaacaattgggaaatctaaagaagcttaggctattggatttatcatcaatggaatcccttgagataccggagggactaatttctaagctacgttacttggaagaactgtatgttgacacttcaaaggtaacagcatatctcatgattgagattgatgacttaacacggctcagatgcttgcaattgtttatcaaagatgtcagtgttctctcactaaatgatcagatcttcaggattgattttgtgaggaagttgaagtcctatatcatttacaccgagttgcaatggattactctggtcaagtcacaccgaaagaatctatatctcaagggagtcaccaccataggagactgggtggtagatgcattgctaggcgaaacagaaaacttaattcttgacagctgctttgaggaagaatcaacagtgctgcatttcactgcactaagctgcatcagtacatttagtgttctgaagattctgcgactcaccaattgcaatggcctgacacaccttgtctggtgtaacgaccagaaacaatctgtatttcactacctagaagaactccacataacaaagtgcgatagcttgaggtctgtgttccacttccagagcacaagtaagaagttgtctgcgtttccttgcttgaagataatccgtttaatcaacttgcaagaaactgtcagcatttggagttgggaaggaaatccaccaccacagcatatctgtccaaacctaaaggaactcaatgttcagcgctgcagaaaacttgactttgtccttgttgcaagagtagctgctatgcttagtaatcttgagaggttgacactgaaaagcaacgtggctctgaaggaggtcgtggccgatgattacaggatggaggagattgttgccgaacatgttgaaatggaagaaactgttggaaacgaaattgtcagtgctgataccagatatccggcacatcctgcagatgtcggtgactcgttggatccagaagcatttcctagtctaactcatctctctcttgtggatttacctggaatggagtacttctacaaggtcggaggtgaaatcatgagattctcctggaaatcactagtaagtctcaagctgggaggttgccactccctgaaagggttcccaatccatggtgcaagtgctccaggactgaagaatgttgagttagtacataatggtgataaaagctggtaccaaacgctgatatcacaggatgcatctttggctgaacgattcaaaactacacaagagtaa
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| Protein seq | MKLLSDMIHCSRPVETAAIAGVTKSGIDMAQGPVKSMGSYLWARVTHLVKCEAEVDKMKVKVDSLLRDKTDMETIIEHANYECRVASEATKQWILDVEEIATQAKDLVVECKGKNPARHDLHDADATQKARKKIEVMNPIRRLQIGALAIKLLARAEELLKHRNDLFLLVPCRRPPNTLMLRNNVMEFGSRNEIVSQIINALKEDKVHIVGVYGPCGIGKSLLVAAILEKMKTQKEFDEVITVDLREKPGLEEIKNSFAKQLGMIYSAKLNAHRAAFLAEKLKEKKSILFLDNAWESLDLWKMGIPVEECKVIVTTQKIEVCKYMGAQVEISVDFLTEKESWELFKFKAVVPDISGTETVKGKIAKRCGGLPLALDVIGTVLCGKDKRYWECALSELESSYPLEKSEVLQKIYMPLESSYNHLEGDEKKSLFLLCSLFPGGHKISKNELTSYWTGEDIFNEFNTLEETRRKLHMRITDIEDSFLLLPINDTKCVMMHNIVSRGIWLVSSLENLRVLSLAGCSIDSLPEQLGNLKKLRLLDLSSMESLEIPEGLISKLRYLEELYVDTSKVTAYLMIEIDDLTRLRCLQLFIKDVSVLSLNDQIFRIDFVRKLKSYIIYTELQWITLVKSHRKNLYLKGVTTIGDWVVDALLGETENLILDSCFEEESTVLHFTALSCISTFSVLKILRLTNCNGLTHLVWCNDQKQSVFHYLEELHITKCDSLRSVFHFQSTSKKLSAFPCLKIIRLINLQETVSIWSWEGNPPPQHICPNLKELNVQRCRKLDFVLVARVAAMLSNLERLTLKSNVALKEVVADDYRMEEIVAEHVEMEETVGNEIVSADTRYPAHPADVGDSLDPEAFPSLTHLSLVDLPGMEYFYKVGGEIMRFSWKSLVSLKLGGCHSLKGFPIHGASAPGLKNVELVHNGDKSWYQTLISQDASLAERFKTTQE |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0013880 | OsNaBo_11g0013880.01 | Chr11 | 18439297 | 18442450 | - | NAM | ||
| CDS seq | atgaaactcttatctgacatgattcattgctccaggcctgtggagacagcggccattgctggcgtaaccaaatctggaatagatatggctcagggacccgtgaagagtatgggcagctatctatgggccagggtaacccacttagtaaaatgtgaggctgaagtcgacaagatgaaggtgaaggtagattcactgcttcgagataagacagacatggagaccatcattgagcatgcaaattatgaatgcagagtagcatccgaagccacaaaacaatggatattagatgttgaagaaatagcaactcaagctaaagatttggttgttgaatgcaagggtaaaaatccagccaggcatgatctgcatgatgcagatgccacacaaaaAgctagaaagaaaatagaggtcatgaacccaattcgccgactgcagattggcgcattagccataaaactactagctcgagctgaagaactgcttaagcacaggaatgatctttttttgcttgtaccttgccgaagaccaccaaacactctgatgcttcgaaataatgtgatggaattcggctctagaaatgaaattgtgagccagataattaacgcactcaaagaagataaagtgcacatagtaggtgtttatggaccttgtggcataggtaaaagtcttttggtggctgcaattttggagaagatgaaaacacaaaaggaatttgatgaagtcataacagttgaccttagagagaagccaggactagaggagattaaaaAcagtttcgccaagcaattgggaatgatatacagtgcaaaactcaatgctcatagagcagcttttctggcagaaaaactcaaggaaaagaagtctatcctgttcttggacaacgcctgggaaagcttggacctctggaagatgggcataccagtcgaggaatgcaaagtaattgtcactacacaaaaaatcgaagtttgcaagtacatgggagcacaagtagagatttcggtggacttcttaactgagaaagaatcatgggaacttttcaaattcaaagcagtagttcctgacatatctggaacagaaaccgtaaaaggaaaaatagcgaaaagatgtggcggtttacctcttgcactcgatgtaatcgggacagtcctgtgtggaaaggacaagaggtactgggagtgtgctttgtcagagcttgagagttcctaccctcttgagaagtctgaagtgttgcaaaagatatacatgcccttggaatccagttacaaccatcttgaaggggatgagaaaaaatctttgttcttgttgtgtagcttgtttcctggaggacacaaaataagtaaaaatgagctaacaagttactggacaggggaggacatcttcaacgagttcaatactttagaggaaaccaggagaaaattacacatgaggatcacagatatagaagactcttttctgctgttgccaattaatgataccaaatgtgtcatgatgcacaatatagtatctagaggcatttggttagtcagtagcttggagaacttgcgagtacttagtctagctggttgttcaattgattcacttccagaacaattgggaaatctaaagaagcttaggctattggatttatcatcaatggaatcccttgagataccggagggactaatttctaagctacgttacttggaagaactgtatgttgacacttcaaaggtaacagcatatctcatgattgagattgatgacttaacacggctcagatgcttgcaattgtttatcaaagatgtcagtgttctctcactaaatgatcagatcttcaggattgattttgtgaggaagttgaagtcctatatcatttacaccgagttgcaatggattactctggtcaagtcacaccgaaagaatctatatctcaagggagtcaccaccataggagactgggtggtagatgcattgctaggcgaaacagaaaacttaattcttgacagctgctttgaggaagaatcaacagtgctgcatttcactgcactaagctgcatcagtacatttagtgttctgaagattctgcgactcaccaattgcaatggcctgacacaccttgtctggtgtaacgaccagaaacaatctgtatttcactacctagaagaactccacataacaaagtgcgatagcttgaggtctgtgttccacttccagagcacaagtaagaagttgtctgcgtttccttgcttgaagataatccgtttaatcaacttgcaagaaactgtcagcatttggagttgggaaggaaatccaccaccacagcatatctgtccaaacctaaaggaactcaatgttcagcgctgcagaaaacttgactttgtccttgttgcaagagtagctgctatgcttagtaatcttgagaggttgacactgaaaagcaacgtggctctgaaggaggtcgtggccgatgattacaggatggaggagattgttgccgaacatgttgaaatggaagaaactgttggaaacgaaattgtcagtgctgataccagatatccggcacatcctgcagatgtcggtgactcgttggatccagaagcatttcctagtctaactcatctctctcttgtggatttacctggaatggagtacttctacaaggtcggaggtgaaatcatgagattctcctggaaatcactagtaagtctcaagctgggaggttgccactccctgaaagggttcccaatccatggtgcaagtgctccaggactgaagaatgttgagttagtacataatggtgataaaagctggtaccaaacgctgatatcacaggatgcatctttggctgaacgattcaaaactacacaagagtaa
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| Protein seq | MKLLSDMIHCSRPVETAAIAGVTKSGIDMAQGPVKSMGSYLWARVTHLVKCEAEVDKMKVKVDSLLRDKTDMETIIEHANYECRVASEATKQWILDVEEIATQAKDLVVECKGKNPARHDLHDADATQKARKKIEVMNPIRRLQIGALAIKLLARAEELLKHRNDLFLLVPCRRPPNTLMLRNNVMEFGSRNEIVSQIINALKEDKVHIVGVYGPCGIGKSLLVAAILEKMKTQKEFDEVITVDLREKPGLEEIKNSFAKQLGMIYSAKLNAHRAAFLAEKLKEKKSILFLDNAWESLDLWKMGIPVEECKVIVTTQKIEVCKYMGAQVEISVDFLTEKESWELFKFKAVVPDISGTETVKGKIAKRCGGLPLALDVIGTVLCGKDKRYWECALSELESSYPLEKSEVLQKIYMPLESSYNHLEGDEKKSLFLLCSLFPGGHKISKNELTSYWTGEDIFNEFNTLEETRRKLHMRITDIEDSFLLLPINDTKCVMMHNIVSRGIWLVSSLENLRVLSLAGCSIDSLPEQLGNLKKLRLLDLSSMESLEIPEGLISKLRYLEELYVDTSKVTAYLMIEIDDLTRLRCLQLFIKDVSVLSLNDQIFRIDFVRKLKSYIIYTELQWITLVKSHRKNLYLKGVTTIGDWVVDALLGETENLILDSCFEEESTVLHFTALSCISTFSVLKILRLTNCNGLTHLVWCNDQKQSVFHYLEELHITKCDSLRSVFHFQSTSKKLSAFPCLKIIRLINLQETVSIWSWEGNPPPQHICPNLKELNVQRCRKLDFVLVARVAAMLSNLERLTLKSNVALKEVVADDYRMEEIVAEHVEMEETVGNEIVSADTRYPAHPADVGDSLDPEAFPSLTHLSLVDLPGMEYFYKVGGEIMRFSWKSLVSLKLGGCHSLKGFPIHGASAPGLKNVELVHNGDKSWYQTLISQDASLAERFKTTQE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0492500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29090 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0492500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013870 | RBH | 0.262092 | 0.862853 | 0.253662 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013630 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013890 | RBH | 0.0 | 0.050345 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0272600 | RBH | 0.032831 | 0.0053425 | 0.0099495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013980 | RBH | 0.064920 | 0.190313 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013690 | RBH | 2.203513 | 8.373736 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013540 | RBH | 0.0 | 0.0 | 0.144513 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013840 | RBH | 0.095362 | 1.789348 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013670 | RBH | 0.206095 | 0.0 | 0.919580 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
