Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0012170 | OGI:11040030 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:15000099-15001995 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | atggcagctttggctgcgcccgcgctgcgccgtctccgctcgccgcggctctgccttgccgccacggtcaattgcatcagcaacaatgccgccccggccgcatccgctggggtcaaccatgtgcaggactcgaactggcgcgtcgcggagctggccgcggccgggcgagtctcggacgcccgcaggctgttcgacggaatgcccgaccgggacgtggtgtcgtggacggcgatggtcgccgcgtacgcgcgccggggcatgctccaggaggcgcgggtgctgttcgaccgccctgatgcgcgccggaacgtggtcacctggacggcgctgctctccggctacgcgcgcgcacgccgcgttgacgaggccgaggccctcttcgagggcatggcggagaggaacgtcgtctcttggaacacgatgctggaggcgtataccgcagttggccgcgtcgaggatgcgtctgcccttttcaatcgcatgccggtgagggatgctggctcttggaacaTtcttctgtgtggacttgtgcggtcagggagtttggagagggctcgtaagatgtttgagagaatgccagtgagggatgtcatgtcatggaccacaatgatttctggccttgcacggaatggaagcgttgacgacgcttgggttctgtttgatgccatgccagagaggaatgTtgtttcttggaatgccatgatctctgggtatgcacgaaaccacaggattgaggaagcacttgatttgttcacgaagatgcctattagggatgttgcttcttggaacattatgatcactggcTttatccagaacaaagacttgaagagtgcacggcaactttttgatgagatgcctaaaaggaatgtgatcacttggaccaccatgatgaatggttacttacaatgcatgcagagtgaaatggcactaaaattatttaactgtatgcttgttcaaggaatccaaccaaatcaagtgacatttctaggttctcttgatgcgtgcagcaaccttgctgcactctgtgaagggcagcaggttcatcagatgatatgcaaaacaccatctcagtttgatacttttgtggaatccactctaatgaacttatatgccaagtgtggtgaaattaggctggcaagaaatgtgtttgatttctcaatggagaaggacttaatctcatggaatgggataatcgcagcatatgcacatcatgggTttggcatagaagcaatgcatttgtacaaaaatatgcaagaaaatggttataagcctaatgatgctacctatgtgggattgctctcagcatgtagccacgccggtttagtggatgaagggcttaagatctttgaatccatggtaaaggataactccattgtagtgcgtgatgaacattacacttgcttggttgatctttgtagccgagctggacggcttgaggatgctaaaagattaattagctggttcaagattaaacctacatcaagtaccgtttggagtgcccttctaggtggatgcaattcacatggaaatgaaagtattggtgatttagcggctaaacatctcttggaagcagaacctgataatgctggaacttatactctcttgtgtaacatttatgcttcagctggtaaatggaaagaagcagcagaaattaggtcagagatgaatgttcgagggctaaagaaacagccagggtgtagttggatcgaggtggcaaataaggttcatgtatttgtttcccgtgataaatcccacagtgaatctgacttgatcaatgatctgctgcaggatattcatcgcattatgagaatggctggtactgttcccagggaccatatgcttattgatgtggagctagtggggatttaaaagtaaataaaatgatgaatgtccgatt
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| CDS seq | atggcagctttggctgcgcccgcgctgcgccgtctccgctcgccgcggctctgccttgccgccacggtcaattgcatcagcaacaatgccgccccggccgcatccgctggggtcaaccatgtgcaggactcgaactggcgcgtcgcggagctggccgcggccgggcgagtctcggacgcccgcaggctgttcgacggaatgcccgaccgggacgtggtgtcgtggacggcgatggtcgccgcgtacgcgcgccggggcatgctccaggaggcgcgggtgctgttcgaccgccctgatgcgcgccggaacgtggtcacctggacggcgctgctctccggctacgcgcgcgcacgccgcgttgacgaggccgaggccctcttcgagggcatggcggagaggaacgtcgtctcttggaacacgatgctggaggcgtataccgcagttggccgcgtcgaggatgcgtctgcccttttcaatcgcatgccggtgagggatgctggctcttggaacaTtcttctgtgtggacttgtgcggtcagggagtttggagagggctcgtaagatgtttgagagaatgccagtgagggatgtcatgtcatggaccacaatgatttctggccttgcacggaatggaagcgttgacgacgcttgggttctgtttgatgccatgccagagaggaatgTtgtttcttggaatgccatgatctctgggtatgcacgaaaccacaggattgaggaagcacttgatttgttcacgaagatgcctattagggatgttgcttcttggaacattatgatcactggcTttatccagaacaaagacttgaagagtgcacggcaactttttgatgagatgcctaaaaggaatgtgatcacttggaccaccatgatgaatggttacttacaatgcatgcagagtgaaatggcactaaaattatttaactgtatgcttgttcaaggaatccaaccaaatcaagtgacatttctaggttctcttgatgcgtgcagcaaccttgctgcactctgtgaagggcagcaggttcatcagatgatatgcaaaacaccatctcagtttgatacttttgtggaatccactctaatgaacttatatgccaagtgtggtgaaattaggctggcaagaaatgtgtttgatttctcaatggagaaggacttaatctcatggaatgggataatcgcagcatatgcacatcatgggTttggcatagaagcaatgcatttgtacaaaaatatgcaagaaaatggttataagcctaatgatgctacctatgtgggattgctctcagcatgtagccacgccggtttagtggatgaagggcttaagatctttgaatccatggtaaaggataactccattgtagtgcgtgatgaacattacacttgcttggttgatctttgtagccgagctggacggcttgaggatgctaaaagattaattagctggttcaagattaaacctacatcaagtaccgtttggagtgcccttctaggtggatgcaattcacatggaaatgaaagtattggtgatttagcggctaaacatctcttggaagcagaacctgataatgctggaacttatactctcttgtgtaacatttatgcttcagctggtaaatggaaagaagcagcagaaattaggtcagagatgaatgttcgagggctaaagaaacagccagggtgtagttggatcgaggtggcaaataaggttcatgtatttgtttcccgtgataaatcccacagtgaatctgacttgatcaatgatctgctgcaggatattcatcgcattatgagaatggctggtactgttcccagggaccatatgcttattgatgtggagctagtggggatttaa
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| Protein seq | MAALAAPALRRLRSPRLCLAATVNCISNNAAPAASAGVNHVQDSNWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINDLLQDIHRIMRMAGTVPRDHMLIDVELVGI |
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| Function | Pentatricopeptide repeat-containing protein At2g35030, mitochondrial [UniProtKB/Swiss-Prot:O64766] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0012170 | OsNaBo_11g0012170.01 | Chr11 | 15000099 | 15001995 | + | NAM | ||
| CDS seq | atggcagctttggctgcgcccgcgctgcgccgtctccgctcgccgcggctctgccttgccgccacggtcaattgcatcagcaacaatgccgccccggccgcatccgctggggtcaaccatgtgcaggactcgaactggcgcgtcgcggagctggccgcggccgggcgagtctcggacgcccgcaggctgttcgacggaatgcccgaccgggacgtggtgtcgtggacggcgatggtcgccgcgtacgcgcgccggggcatgctccaggaggcgcgggtgctgttcgaccgccctgatgcgcgccggaacgtggtcacctggacggcgctgctctccggctacgcgcgcgcacgccgcgttgacgaggccgaggccctcttcgagggcatggcggagaggaacgtcgtctcttggaacacgatgctggaggcgtataccgcagttggccgcgtcgaggatgcgtctgcccttttcaatcgcatgccggtgagggatgctggctcttggaacaTtcttctgtgtggacttgtgcggtcagggagtttggagagggctcgtaagatgtttgagagaatgccagtgagggatgtcatgtcatggaccacaatgatttctggccttgcacggaatggaagcgttgacgacgcttgggttctgtttgatgccatgccagagaggaatgTtgtttcttggaatgccatgatctctgggtatgcacgaaaccacaggattgaggaagcacttgatttgttcacgaagatgcctattagggatgttgcttcttggaacattatgatcactggcTttatccagaacaaagacttgaagagtgcacggcaactttttgatgagatgcctaaaaggaatgtgatcacttggaccaccatgatgaatggttacttacaatgcatgcagagtgaaatggcactaaaattatttaactgtatgcttgttcaaggaatccaaccaaatcaagtgacatttctaggttctcttgatgcgtgcagcaaccttgctgcactctgtgaagggcagcaggttcatcagatgatatgcaaaacaccatctcagtttgatacttttgtggaatccactctaatgaacttatatgccaagtgtggtgaaattaggctggcaagaaatgtgtttgatttctcaatggagaaggacttaatctcatggaatgggataatcgcagcatatgcacatcatgggTttggcatagaagcaatgcatttgtacaaaaatatgcaagaaaatggttataagcctaatgatgctacctatgtgggattgctctcagcatgtagccacgccggtttagtggatgaagggcttaagatctttgaatccatggtaaaggataactccattgtagtgcgtgatgaacattacacttgcttggttgatctttgtagccgagctggacggcttgaggatgctaaaagattaattagctggttcaagattaaacctacatcaagtaccgtttggagtgcccttctaggtggatgcaattcacatggaaatgaaagtattggtgatttagcggctaaacatctcttggaagcagaacctgataatgctggaacttatactctcttgtgtaacatttatgcttcagctggtaaatggaaagaagcagcagaaattaggtcagagatgaatgttcgagggctaaagaaacagccagggtgtagttggatcgaggtggcaaataaggttcatgtatttgtttcccgtgataaatcccacagtgaatctgacttgatcaatgatctgctgcaggatattcatcgcattatgagaatggctggtactgttcccagggaccatatgcttattgatgtggagctagtggggatttaa
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| Protein seq | MAALAAPALRRLRSPRLCLAATVNCISNNAAPAASAGVNHVQDSNWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYTLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLINDLLQDIHRIMRMAGTVPRDHMLIDVELVGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0433101 | RBH | 0.246723 | 0.386488 | 0.625818 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24530 | RBH | 0.134810 | 0.357066 | 0.149714 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0433101 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012290 | RBH | 0.068361 | 0.0 | 0.228214 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012310 | RBH | 0.0 | 0.0 | 0.336364 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012230 | RBH | 0.157262 | 0.0 | 1.204827 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0011970 | RBH | 0.037593 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012390 | RBH | 0.0 | 0.952334 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0209700 | RBH | 0.204027 | 0.569324 | 0.266634 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0012240 | RBH | 0.102009 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0223100 | RBH | 0.5131335 | 0.722531 | 2.7675275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012360 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0012480 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0012090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0011960 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012160 | RBH | 0.059410 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0003200 | SBH | 0.0 | 0.0 | 0.0 |
