Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNaBo_11g0005900 | OGI:11014740 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:4669781-4673786 | ||||||||
Gene Symbol | RLCK315, OsRLCK315 | ||||||||||
DNA seq | gggagaacctgcaattacaatcttcctactttatttcccactttctcatcctttggatgagagaattttggtttataacaaggaaattacatccttctgagatgatagaacagacccataacttatgggagaacaagatctaagacatcagattcaaggacagacttggaggagggcattttgcatgtgccacttctcatccaaggaacaaaagaagttaacttaagaagggggaaaaagatctatacctactatacaaaaatgactggtgtgccatggactgatcaatcaaagctcgatgatcggctccatcttcctcgtaaatactcttccagggaagtgttcgcagcaatgaaatcgttgctgctgacagaggcagaatcgtcattgacatcgaatgcaagattgatgtaggactggatgttgcggttattctctggcggtgtaaccacaggttcatcaccatcgctctcgtatgacaatcctacttctgatctagcccacttcagaataccattgtcaccgttaagtagcttcagaacctggtatatacaccaagctgtgtgtaagatacagcacaatggaaacaatatatgaacttaggcattggatgcatcagaaaaacaaaatcttacaactgcaatgtgaggacggcgttgaggtgttggtctgatgcagagggaagcagcaagggtcatcctctccactttgttggcatggtcctctgtaggcaagttaggatccacaagttgtgtgagttttcctccctgtatgatggagtttgcctacatacaaaaacaaccctcattatctgctctttatcattatgcaacctaagctttgggtccaaagaaatgaaggatagaacatgacacttacccacatcactaggctctcctgacctttcggacaaccagtgcaaagcggtttcttgcctgaaatgagttcaagaaggacaacaccaaaagcatatacatcaattttgtcattcaccttgccatgcatgaaatattctggagccaagtatctgcaaaagatatgcatacactggtaaggtgaggttgccacaacccaacaaaaaaaaaaaggtgaaatagcaaacaatcaattagctaacaaacccgaaagttccagcaacatcgttgcatgtgatctgcgatgttgcatcagtgtcccagagcgcgaggccaaaatctgataactgcataacaacacattgaaattttaagctcacttaatttgatacagcataagaactgaagatttttcatgatgttgaatgggcaaatgttacctttggctcaaactcctctgagatgaggatgtttgatgacttgacatccctatggatcactggacgattgttgccattaccatggagataatctagtgcatgagcaactccaagggccacattgaacctctcggtccatccaaataagttgttgcatcctttctcacctgtgtgacatcagaataagatggttttcttgaaaaatggcaatgttaaagggagaaaaactaacaggtggtagaagttacataacataccatgcagtatctcttccaggctgcctctttgcatgtactcgtacaccaacagaaggtcagtgtccttgaagcagaaaccggcaagcgatataatgttcttgtggctgagggagctgataatctcaatctctgagacgaactccttcagcacttcagcggaatacttcaagatctttactgccaactccttgccattttctaagcaacctttgtaaacttggctagtgccaccttgtccaactatacactctgcagaaaacaaccaatttggtcactaaacctagcatgtctaaaaattttagcaataacagagaaaaagtgaaattcttaccaggtgagaaatcagaagtgatctttgcaagctcgctgtaactgaaggtagaataaacgtaagggaatttttctctgagtgcaatcaactcctctggaatttctttatccgaggaattatccaattcctcgatcaccacagaagactttcctgaattgcttctcgaagggacagccacccggtcacgcaaaatacgactagcacttgtgatgccatctggtgttgtggttctgtactctgaacggactggtgaagctgacgaatacctactaggtagccgcattgcccactgcaccacggacatctttgatctgtcatgcgaggcaggttttctgtcaggcaggaacttcttcctaaggaagggccagccagttgccacttctggtgattcacgacggtgaaccttcattgggactaatgccaatgaaacttctctcgttggtgccggagagcttggtggcatggtgacagcccggaaaatggacctgttatcttgttcacactcatcccgaagtttctccccaatcacagaagtcaggagcttccggtaactcctccttggtgtctctgtcactgcattccattttacaggcttcagcatatgctgaatttacagccgcccatgccaagaaatgagaataaactgaaaatgaaattgtgtaagtagcatacttgtgctagcactatggtatggttcttgctgtactgcatctttatgaaaaagaatcttgccattgttcactgcaagaaccgagcatccagtaggaaccctctttgcacagtacttggcaacagaaatggaggaggatctactgtttgggagcaaacaatagttccaacatcagagaacaaattatactacacacagtaaaagtgtgtcaaattaattaggtacctAaaagatagagaattcttcgcaacaccaaggatgagatgcgcagcgccgtaggaagccgcttctttcaccagagttttccggatagatgatcctccacagaccttgagctccaaattaatctgacgaatttaaagaggaaaggcacgatgataacaattttctagccaacctctcagctaaaccccaagcgggcaactagcaagcgaataattttacaagcatcagaaaatcaattccgcttcatgaatactgaatgaacaaaactctagctgtcaaaatttacggtctcaaaatttccgctgtgctcaaatcctcAaaaaagatgcgAaaaaaaatcagaccatccagtaaagaaataatttagggacagtgacccagtaaaaggggaagagaagcagcagagggagcagcaatcaattatgagccgaatttggagccgtttgcgaggaaaaaaagttgcaccgccaccattgaataggaggcgagaaagaagtaaccgatgcgaaaaagcagaagcacaacaagaaacggagatcactgacctgcttgagattgcagaagccgtcgtacacggcgagcaccgacaccagcgagtcctccgccgcgtcgctcctctcctccaatcccaccgctcctcctcctcctgctcctcctcctcctgctgctgaaaaaggagcccaagatgagaaaaggaaaaaaaaatccccAaaaaaaagatgagcaagcgaggcacaaggaaatggcaagagattagaagcagcgagaaagactcgcaccggcggcggcgacgtggagggcgacgacgcggtccccggcattggcgaccttgacgagcgcccacgtcagcagctcgcggctcgccgcgtccctcctgatccccaccaccaccgtcctccccctccccaccgccggcgacgccgccgccgccgggagcaaccctcctcctccgccgccgccgccgcggcgcgcgccgtcgggaacaagcagccgcatggctgccgcgcgagctctctcccctctcctctcctccctcgcagccgcagagagagaagcaagagagagaaagtagagagagagagatttgtgtcagcgatccgagggaggctgcgtcgttttatgcggccgcttgctcaagtcagcggcgtccctaaacccgtaattaatccttaatcccgttggttaatcacctgattcaaccgccgttacctgccgtttcttccccccat
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CDS seq | atggggggaagaaacggcagggggaggacggtggtggtggggatcaggagggacgcggcgagccgcgagctgctgacgtgggcgctcgtcaaggtcgccaatgccggggaccgcgtcgtcgccctccacgtcgccgccgccgcagcaggaggaggaggagcaggaggaggaggagcggtgggattggaggagaggagcgacgcggcggaggactcgctggtgtcggtgctcgccgtgtacgacggcttctgcaatctcaagcagattaatttggagctcaaggtctgtggaggatcatctatccggaaaactctggtgaaagaagcggcttcctacggcgctgcgcatctcatccttggtgttgcgaagaattctctatctttTagtagatcctcctccatttctgttgccaagtactgtgcaaagagggttcctactggatgctcggttcttgcagtgaacaatggcaagattctttttcataaagatgcagtacagcaagaaccataccatagtgctagcacaatgacagagacaccaaggaggagttaccggaagctcctgacttctgtgattggggagaaacttcgggatgagtgtgaacaagataacaggtccattttccgggctgtcaccatgccaccaagctctccggcaccaacgagagaagtttcattggcattagtcccaatgaaggttcaccgtcgtgaatcaccagaagtggcaactggctggcccttccttaggaagaagttcctgcctgacagaaaacctgcctcgcatgacagatcaaagatgtccgtggtgcagtgggcaatgcggctacctagtaggtattcgtcagcttcaccagtccgttcagagtacagaaccacaacaccagatggcatcacaagtgctagtcgtattttgcgtgaccgggtggctgtcccttcgagaagcaattcaggaaagtcttctgtggtgatcgaggaattggataattcctcggataaagaaattccagaggagttgattgcactcagagaaaaattcccttacgtttattctaccttcagttacagcgagcttgcaaagatcacttctgatttctcacctgagtgtatagttggacaaggtggcactagccaagtttacaaaggttgcttagaaaatggcaaggagttggcagtaaagatcttgaagtattccgctgaagtgctgaaggagttcgtctcagagattgagattatcagctccctcagccacaagaacattatatcgcttgccggtttctgcttcaaggacactgaccttctgttggtgtacgagtacatgcaaagaggcagcctggaagagatactgcatggtgagaaaggatgcaacaacttatttggatggaccgagaggttcaatgtggcccttggagttgctcatgcactagattatctccatggtaatggcaacaatcgtccagtgatccatagggatgtcaagtcatcaaacatcctcatctcagaggagtttgagccaaagttatcagattttggcctcgcgctctgggacactgatgcaacatcgcagatcacatgcaacgatgttgctggaactttcggatacttggctccagaatatttcatgcatggcaaggtgaatgacaaaattgatgtatatgcttttggtgttgtccttcttgaactcatttcaggcaagaaaccgctttgcactggttgtccgaaaggtcaggagagcctagtgatgtgggcaaactccatcatacagggaggaaaactcacacaacttgtggatcctaacttgcctacagaggaccatgccaacaaagtggagaggatgacccttgctgcttccctctgcatcagaccaacacctcaacgccgtcctcacattgcagttgttctgaagctacttaacggtgacaatggtattctgaagtgggctagatcagaagtaggattgtcatacgagagcgatggtgatgaacctgtggttacaccgccagagaataaccgcaacatccagtcctacatcaatcttgcattcgatgtcaatgacgattctgcctctgtcagcagcaacgatttcattgctgcgaacacttccctggaagagtatttacgaggaagatggagccgatcatcgagctttgattga
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Protein seq | MGGRNGRGRTVVVGIRRDAASRELLTWALVKVANAGDRVVALHVAAAAAGGGGAGGGGAVGLEERSDAAEDSLVSVLAVYDGFCNLKQINLELKVCGGSSIRKTLVKEAASYGAAHLILGVAKNSLSFSRSSSISVAKYCAKRVPTGCSVLAVNNGKILFHKDAVQQEPYHSASTMTETPRRSYRKLLTSVIGEKLRDECEQDNRSIFRAVTMPPSSPAPTREVSLALVPMKVHRRESPEVATGWPFLRKKFLPDRKPASHDRSKMSVVQWAMRLPSRYSSASPVRSEYRTTTPDGITSASRILRDRVAVPSRSNSGKSSVVIEELDNSSDKEIPEELIALREKFPYVYSTFSYSELAKITSDFSPECIVGQGGTSQVYKGCLENGKELAVKILKYSAEVLKEFVSEIEIISSLSHKNIISLAGFCFKDTDLLLVYEYMQRGSLEEILHGEKGCNNLFGWTERFNVALGVAHALDYLHGNGNNRPVIHRDVKSSNILISEEFEPKLSDFGLALWDTDATSQITCNDVAGTFGYLAPEYFMHGKVNDKIDVYAFGVVLLELISGKKPLCTGCPKGQESLVMWANSIIQGGKLTQLVDPNLPTEDHANKVERMTLAASLCIRPTPQRRPHIAVVLKLLNGDNGILKWARSEVGLSYESDGDEPVVTPPENNRNIQSYINLAFDVNDDSASVSSNDFIAANTSLEEYLRGRWSRSSSFD |
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Function | Proline-rich receptor-like protein kinase PERK13 [UniProtKB/Swiss-Prot:Q9CAL8] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNaBo_11g0005900 | OsNaBo_11g0005900.01 | Chr11 | 4669781 | 4673786 | - | NAM | ||
CDS seq | atggggggaagaaacggcagggggaggacggtggtggtggggatcaggagggacgcggcgagccgcgagctgctgacgtgggcgctcgtcaaggtcgccaatgccggggaccgcgtcgtcgccctccacgtcgccgccgccgcagcaggaggaggaggagcaggaggaggaggagcggtgggattggaggagaggagcgacgcggcggaggactcgctggtgtcggtgctcgccgtgtacgacggcttctgcaatctcaagcagattaatttggagctcaaggtctgtggaggatcatctatccggaaaactctggtgaaagaagcggcttcctacggcgctgcgcatctcatccttggtgttgcgaagaattctctatctttTagtagatcctcctccatttctgttgccaagtactgtgcaaagagggttcctactggatgctcggttcttgcagtgaacaatggcaagattctttttcataaagatgcagtacagcaagaaccataccatagtgctagcacaatgacagagacaccaaggaggagttaccggaagctcctgacttctgtgattggggagaaacttcgggatgagtgtgaacaagataacaggtccattttccgggctgtcaccatgccaccaagctctccggcaccaacgagagaagtttcattggcattagtcccaatgaaggttcaccgtcgtgaatcaccagaagtggcaactggctggcccttccttaggaagaagttcctgcctgacagaaaacctgcctcgcatgacagatcaaagatgtccgtggtgcagtgggcaatgcggctacctagtaggtattcgtcagcttcaccagtccgttcagagtacagaaccacaacaccagatggcatcacaagtgctagtcgtattttgcgtgaccgggtggctgtcccttcgagaagcaattcaggaaagtcttctgtggtgatcgaggaattggataattcctcggataaagaaattccagaggagttgattgcactcagagaaaaattcccttacgtttattctaccttcagttacagcgagcttgcaaagatcacttctgatttctcacctgagtgtatagttggacaaggtggcactagccaagtttacaaaggttgcttagaaaatggcaaggagttggcagtaaagatcttgaagtattccgctgaagtgctgaaggagttcgtctcagagattgagattatcagctccctcagccacaagaacattatatcgcttgccggtttctgcttcaaggacactgaccttctgttggtgtacgagtacatgcaaagaggcagcctggaagagatactgcatggtgagaaaggatgcaacaacttatttggatggaccgagaggttcaatgtggcccttggagttgctcatgcactagattatctccatggtaatggcaacaatcgtccagtgatccatagggatgtcaagtcatcaaacatcctcatctcagaggagtttgagccaaagttatcagattttggcctcgcgctctgggacactgatgcaacatcgcagatcacatgcaacgatgttgctggaactttcggatacttggctccagaatatttcatgcatggcaaggtgaatgacaaaattgatgtatatgcttttggtgttgtccttcttgaactcatttcaggcaagaaaccgctttgcactggttgtccgaaaggtcaggagagcctagtgatgtgggcaaactccatcatacagggaggaaaactcacacaacttgtggatcctaacttgcctacagaggaccatgccaacaaagtggagaggatgacccttgctgcttccctctgcatcagaccaacacctcaacgccgtcctcacattgcagttgttctgaagctacttaacggtgacaatggtattctgaagtgggctagatcagaagtaggattgtcatacgagagcgatggtgatgaacctgtggttacaccgccagagaataaccgcaacatccagtcctacatcaatcttgcattcgatgtcaatgacgattctgcctctgtcagcagcaacgatttcattgctgcgaacacttccctggaagagtatttacgaggaagatggagccgatcatcgagctttgattga
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Protein seq | MGGRNGRGRTVVVGIRRDAASRELLTWALVKVANAGDRVVALHVAAAAAGGGGAGGGGAVGLEERSDAAEDSLVSVLAVYDGFCNLKQINLELKVCGGSSIRKTLVKEAASYGAAHLILGVAKNSLSFSRSSSISVAKYCAKRVPTGCSVLAVNNGKILFHKDAVQQEPYHSASTMTETPRRSYRKLLTSVIGEKLRDECEQDNRSIFRAVTMPPSSPAPTREVSLALVPMKVHRRESPEVATGWPFLRKKFLPDRKPASHDRSKMSVVQWAMRLPSRYSSASPVRSEYRTTTPDGITSASRILRDRVAVPSRSNSGKSSVVIEELDNSSDKEIPEELIALREKFPYVYSTFSYSELAKITSDFSPECIVGQGGTSQVYKGCLENGKELAVKILKYSAEVLKEFVSEIEIISSLSHKNIISLAGFCFKDTDLLLVYEYMQRGSLEEILHGEKGCNNLFGWTERFNVALGVAHALDYLHGNGNNRPVIHRDVKSSNILISEEFEPKLSDFGLALWDTDATSQITCNDVAGTFGYLAPEYFMHGKVNDKIDVYAFGVVLLELISGKKPLCTGCPKGQESLVMWANSIIQGGKLTQLVDPNLPTEDHANKVERMTLAASLCIRPTPQRRPHIAVVLKLLNGDNGILKWARSEVGLSYESDGDEPVVTPPENNRNIQSYINLAFDVNDDSASVSSNDFIAANTSLEEYLRGRWSRSSSFD
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.389701 | 20.091002 | 7.577031 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0194900 | RBH | 1.317075 | 0.862894 | 7.415190 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08950 | RBH | 0.865296 | 0.675800 | 1.867415 |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0194900 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006080 | RBH | 0.406631 | 6.686346 | 5.164860 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006090 | RBH | 0.192469 | 7.365499 | 2.281194 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006090 | RBH | 0.433698 | 9.730131 | 11.455740 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006000 | RBH | 0.125798 | 0.466057 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005960 | RBH | 4.311796 | 42.680027 | 12.031088 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0078300 | RBH | 4.87065 | 20.1636 | 22.846847 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006010 | RBH | 0.175177 | 1.926698 | 1.467103 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0079300 | RBH | 5.7501675 | 18.313812 | 18.0589105 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005990 | RBH | 0.068893 | 0.268738 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006060 | RBH | 0.000000 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006060 | RBH | 2.338507 | 52.431084 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006090 | RBH | 0.105944 | 0.0 | 0.377211 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006070 | RBH | 0.072368 | 10.291030 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006100 | RBH | 0.108750 | 14.276423 | 2.686140 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006670 | SBH | 0.346137 | 1.439565 | 4.853590 |