Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0005990 | OGI:11014740 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:4776326-4779880 | ||||||||
| Gene Symbol | RLCK315, OsRLCK315 | ||||||||||
| DNA seq | gggagaaaacctgcaataacaatcttcctagtttatttcccactttctcatcctttggatgagagaattttggtttataacaaggaaattacatccttctgagatgatagaacagacccataacttatgggagaacaagatctaagacatcagattaaaggacagacttggaggagggcattttgcatgtgccacttctcatccaaggaacaaaagaagttaacttaagaagaaggggaaaaaagatctatacctactatacaaaaatgactagtataccatggactgatcaatcaaagctcgacgatcggctccatcttcctcgtaaatactcttccagggaagtgttcgcagcgatgaaatcgttgctgctgacagaggcagaatcgtcatcgacatcgaatgcaagattgatgtaggactggatgttgcggttattctctggcggtgtaaccacaggttcatcaccatcgctctcgtatgacaatcctacttctgatctagcccacttcagaataccattgtcgccgttaagtagcttcagaacctggtatatacaccaagctgtgtgtaagatacagcacaatggaaacaatatatgaacttaggcattggatgcatcagaaaaacaaaatcttacaactgcaatgtgaggacggcgttgaggtgttggtctgatgcagagggaagcagcaagggtcatcctctccactttgttggcatggtcctctgtaggcaagttaggatccacaagttgtgtgagttttcctccctgtatgatggagtttgcctacatacaaaaacaaccctcattatctgctctttatcattatgcaacctaagctttgggtccaaagaaatgaaggatagaacatgacacttacccacatcactaggctctcctgaccttttggacaaccagtgcaaagcggtttcttgcctgaaatgagttcaagaaggacgacaccaaaagcgtatacatcaattttgtcattcaccttgccatgcatgaaatattctggagccaagtatctgcaaaagatatgcatacactggtaaggtaaggttgccacaacccaacaaaaaaaaaaggtgaaatagcaaacaatcaattagctaacaaacccgaaagttccagcaacatcgttgcatgtgatctgcgatgttgcatcagtgtcccagagcgcgaggccaaaatctgataactgcataacaagacgttgaaattgtaagctcacttaatttgatacagcacaggaactgaagatttttcatgatgttgaatgggcaaatgttacctttggctcaaaatcctctgagatgaggatgtttgatgacttgacatccctatggatcactggacgattgttgccattaccatgaagataatctagtgcatgagcaactccaagggccacattgaacctctcggtccatccgaataagttgtcacatcctttctcacctgtgtgacatcagaataagatggttttcttgataaatggcaatgttaaagggagaaaaactaacaggtggtagaagttacataacataccatgcagtatctcttccagactgcctcttcgcaagtactcgtacaccaacagaaggtcagtgtccttgaagcagaaaccggcaagcgatataatgttcttgtggctgagggagctgacaatctcaatctctgagacgaactccttcagcacttcatcggaatacttcaagatctttactgccaattccttgccattttctaagcaacctttgtaaacttggctagtgccaccttgtccaactatacactctgcagaaaacaaccaatctggtcactaaacctagcatgtctaaaaattttagcaataacagagaaaaagtgaaattcttaccaggtgagaaatcagaagtgatctttgcaagctcactgtgactgaaggtagaataaacggaagggaatttttctctgagtgcaatcaactcctctggaatttctttatccgaggaattatccaattcctcgatcaccacagaagactttcctgaattgcttctcgaagggacagccacccggtcacgcaaaatacgactagcacttgtgatgccatctggtgttgtggttctgtactctgaacggactggtgaagctgacgaatacctactaggtagccgcattgcccactgcaccacggacatcttcgatctgtcatgcgaggcaggttttctgtcaggcaggaacttcttcctaaggaagggccagccagttgccacttctggtgattcacgacggtgaaccttcattgggactaatgccaatgaaacttctctcgttggtgccggagagcttggtggcatggtgacagcccggaaaatggacctgttatcttgttcacactcatcccgaagtttctccccaatcacagaagtcaggagcttccggtaactcctccttggtgcctctgtcactgcattccattttccagacttcagcatatgctgaatttacagccgcccatgccaagaaatgagaataaactgaaaatgaaattgtgtaagtagcatacttgtgctagcactatggtatggttcttgctgtactgcatctttatgaaaaagaatcttgccgttgttcactgcaagaaccgagcatccagtaggaaccctctttgcacagtacttggcaacagaaagggaggatgatctactgtttgggagcaaacaatagttccaacatcagagaacaaattatacttcggatcaacacacagtaaaagtgtgtcaaattaattaggtacctaaaagatagagaattcttcgcaacaccaaggatgagatgcgcagcgccgtaggaagccgcttctttcaccagagttttccggatagatgatcctccacagaccttgagctccaaattaatctgacgaatttaaataggaaaagcacgatgaaaagaattttctagccaacctctcagctaaaccccaagcggtcaactagcaagcgaataattttacaagcatcagaaaattaattcttcacgaatactgaatgaacaaaactctagctgtcaaaatttacggtcctgaaatttccgacgcgctcaaatcctcaaaaaaacgatgtgaaaaaaaaatcagatcatccagtaaaaaataaaaatttagggacagttacccagtaaaaggggaagagaaacagctcaaatacttgagggagcagcccaatcaattatgagccgaatttggagccgtttgcgaggaaaaaagttgcaccgccaccattgaataggaggcgagaaagaagtaaccgatgcgaaaaaagcagaagcacaagaaacggagatcactgacctgcttgaggttgcagaagccgtcgtacacggcgagcaccgacaccagcgagtcctccgccgcgtcgctcctctcctccaatcccaccgctcctcctgctgctgctgctgaaaaaggagcccaagatgagaaaaggaaaaaaaaatccccaaaaaaagatgagcaggcgaggcacaaggaaatggcaagagattagaagcagcgagcgaga
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| CDS seq | tctcttgccatttccttgtgcctcgcctgctcatctttttttggggatttttttttccttttctcatcttgggctcctttttcagcagcagcagcaggaggagcggtgggattggaggagaggagcgacgcggcggaggactcgctggtgtcggtgctcgccgtgtacgacggcttctgcaacctcaagcagattaatttggagctcaaggtctgtggaggatcatctatccggaaaactctggtgaaagaagcggcttcctacggcgctgcgcatctcatccttggtgttgcgaagaattctctatcttttagtagatcatcctccctttctgttgccaagtactgtgcaaagagggttcctactggatgctcggttcttgcagtgaacaacggcaagattctttttcataaagatgcagtacagcaagaaccataccatagtgctagcacaatgacagaggcaccaaggaggagttaccggaagctcctgacttctgtgattggggagaaacttcgggatgagtgtgaacaagataacaggtccattttccgggctgtcaccatgccaccaagctctccggcaccaacgagagaagtttcattggcattagtcccaatgaaggttcaccgtcgtgaatcaccagaagtggcaactggctggcccttccttaggaagaagttcctgcctgacagaaaacctgcctcgcatgacagatcgaagatgtccgtggtgcagtgggcaatgcggctacctagtaggtattcgtcagcttcaccagtccgttcagagtacagaaccacaacaccagatggcatcacaagtgctagtcgtattttgcgtgaccgggtggctgtcccttcgagaagcaattcaggaaagtcttctgtggtgatcgaggaattggataattcctcggataaagaaattccagaggagttgattgcactcagagaaaaattcccttccgtttattctaccttcagtcacagtgagcttgcaaagatcacttctgatttctcacctgattggttgttttctgcagagtgtatagttggacaaggtggcactagccaagtttacaaaggttgcttagaaaatggcaaggaattggcagtaaagatcttgaagtattccgatgaagtgctgaaggagttcgtctcagagattgagattgtcagctccctcagccacaagaacattatatcgcttgccggtttctgcttcaaggacactgaccttctgttggtgtacgagtacttgcgaagaggcagtctggaagagatactgcatggtgagaaaggatgtgacaacttattcggatggaccgagaggttcaatgtggcccttggagttgctcatgcactagattatcttcatggtaatggcaacaatcgtccagtgatccatagggatgtcaagtcatcaaacatcctcatctcagaggattttgagccaaagttatcagattttggcctcgcgctctgggacactgatgcaacatcgcagatcacatgcaacgatgttgctggaactttcggatacttggctccagaatatttcatgcatggcaaggtgaatgacaaaattgatgtatacgcttttggtgtcgtccttcttgaactcatttcaggcaagaaaccgctttgcactggttgtccaaaaggtcaggagagcctagtgatgtgggcaaactccatcatacagggaggaaaactcacacaacttgtggatcctaacttgcctacagaggaccatgccaacaaagtggagaggatgacccttgctgcttccctctgcatcagaccaacacctcaacgccgtcctcacattgcagttgttctgaagctacttaacggcgacaatggtattctgaagtgggctagatcagaagtaggattgtcatacgagagcgatggtgatgaacctgtggttacaccgccagagaataaccgcaacatccagtcctacatcaatcttgcattcgatgtcgatgacgattctgcctctgtcagcagcaacgatttcatcgctgcgaacacttccctggaagagtatttacgaggaagatggagccgatcgtcgagctttgattga
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| Protein seq | SLAISLCLACSSFFGDFFFLFSSWAPFSAAAAGGAVGLEERSDAAEDSLVSVLAVYDGFCNLKQINLELKVCGGSSIRKTLVKEAASYGAAHLILGVAKNSLSFSRSSSLSVAKYCAKRVPTGCSVLAVNNGKILFHKDAVQQEPYHSASTMTEAPRRSYRKLLTSVIGEKLRDECEQDNRSIFRAVTMPPSSPAPTREVSLALVPMKVHRRESPEVATGWPFLRKKFLPDRKPASHDRSKMSVVQWAMRLPSRYSSASPVRSEYRTTTPDGITSASRILRDRVAVPSRSNSGKSSVVIEELDNSSDKEIPEELIALREKFPSVYSTFSHSELAKITSDFSPDWLFSAECIVGQGGTSQVYKGCLENGKELAVKILKYSDEVLKEFVSEIEIVSSLSHKNIISLAGFCFKDTDLLLVYEYLRRGSLEEILHGEKGCDNLFGWTERFNVALGVAHALDYLHGNGNNRPVIHRDVKSSNILISEDFEPKLSDFGLALWDTDATSQITCNDVAGTFGYLAPEYFMHGKVNDKIDVYAFGVVLLELISGKKPLCTGCPKGQESLVMWANSIIQGGKLTQLVDPNLPTEDHANKVERMTLAASLCIRPTPQRRPHIAVVLKLLNGDNGILKWARSEVGLSYESDGDEPVVTPPENNRNIQSYINLAFDVDDDSASVSSNDFIAANTSLEEYLRGRWSRSSSFD |
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| Function | Proline-rich receptor-like protein kinase PERK13 [UniProtKB/Swiss-Prot:Q9CAL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0005990 | OsLima_11g0005990.01 | Chr11 | 4776326 | 4779880 | - | NAM | ||
| CDS seq | tctcttgccatttccttgtgcctcgcctgctcatctttttttggggatttttttttccttttctcatcttgggctcctttttcagcagcagcagcaggaggagcggtgggattggaggagaggagcgacgcggcggaggactcgctggtgtcggtgctcgccgtgtacgacggcttctgcaacctcaagcagattaatttggagctcaaggtctgtggaggatcatctatccggaaaactctggtgaaagaagcggcttcctacggcgctgcgcatctcatccttggtgttgcgaagaattctctatcttttagtagatcatcctccctttctgttgccaagtactgtgcaaagagggttcctactggatgctcggttcttgcagtgaacaacggcaagattctttttcataaagatgcagtacagcaagaaccataccatagtgctagcacaatgacagaggcaccaaggaggagttaccggaagctcctgacttctgtgattggggagaaacttcgggatgagtgtgaacaagataacaggtccattttccgggctgtcaccatgccaccaagctctccggcaccaacgagagaagtttcattggcattagtcccaatgaaggttcaccgtcgtgaatcaccagaagtggcaactggctggcccttccttaggaagaagttcctgcctgacagaaaacctgcctcgcatgacagatcgaagatgtccgtggtgcagtgggcaatgcggctacctagtaggtattcgtcagcttcaccagtccgttcagagtacagaaccacaacaccagatggcatcacaagtgctagtcgtattttgcgtgaccgggtggctgtcccttcgagaagcaattcaggaaagtcttctgtggtgatcgaggaattggataattcctcggataaagaaattccagaggagttgattgcactcagagaaaaattcccttccgtttattctaccttcagtcacagtgagcttgcaaagatcacttctgatttctcacctgattggttgttttctgcagagtgtatagttggacaaggtggcactagccaagtttacaaaggttgcttagaaaatggcaaggaattggcagtaaagatcttgaagtattccgatgaagtgctgaaggagttcgtctcagagattgagattgtcagctccctcagccacaagaacattatatcgcttgccggtttctgcttcaaggacactgaccttctgttggtgtacgagtacttgcgaagaggcagtctggaagagatactgcatggtgagaaaggatgtgacaacttattcggatggaccgagaggttcaatgtggcccttggagttgctcatgcactagattatcttcatggtaatggcaacaatcgtccagtgatccatagggatgtcaagtcatcaaacatcctcatctcagaggattttgagccaaagttatcagattttggcctcgcgctctgggacactgatgcaacatcgcagatcacatgcaacgatgttgctggaactttcggatacttggctccagaatatttcatgcatggcaaggtgaatgacaaaattgatgtatacgcttttggtgtcgtccttcttgaactcatttcaggcaagaaaccgctttgcactggttgtccaaaaggtcaggagagcctagtgatgtgggcaaactccatcatacagggaggaaaactcacacaacttgtggatcctaacttgcctacagaggaccatgccaacaaagtggagaggatgacccttgctgcttccctctgcatcagaccaacacctcaacgccgtcctcacattgcagttgttctgaagctacttaacggcgacaatggtattctgaagtgggctagatcagaagtaggattgtcatacgagagcgatggtgatgaacctgtggttacaccgccagagaataaccgcaacatccagtcctacatcaatcttgcattcgatgtcgatgacgattctgcctctgtcagcagcaacgatttcatcgctgcgaacacttccctggaagagtatttacgaggaagatggagccgatcgtcgagctttgattga
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| Protein seq | SLAISLCLACSSFFGDFFFLFSSWAPFSAAAAGGAVGLEERSDAAEDSLVSVLAVYDGFCNLKQINLELKVCGGSSIRKTLVKEAASYGAAHLILGVAKNSLSFSRSSSLSVAKYCAKRVPTGCSVLAVNNGKILFHKDAVQQEPYHSASTMTEAPRRSYRKLLTSVIGEKLRDECEQDNRSIFRAVTMPPSSPAPTREVSLALVPMKVHRRESPEVATGWPFLRKKFLPDRKPASHDRSKMSVVQWAMRLPSRYSSASPVRSEYRTTTPDGITSASRILRDRVAVPSRSNSGKSSVVIEELDNSSDKEIPEELIALREKFPSVYSTFSHSELAKITSDFSPDWLFSAECIVGQGGTSQVYKGCLENGKELAVKILKYSDEVLKEFVSEIEIVSSLSHKNIISLAGFCFKDTDLLLVYEYLRRGSLEEILHGEKGCDNLFGWTERFNVALGVAHALDYLHGNGNNRPVIHRDVKSSNILISEDFEPKLSDFGLALWDTDATSQITCNDVAGTFGYLAPEYFMHGKVNDKIDVYAFGVVLLELISGKKPLCTGCPKGQESLVMWANSIIQGGKLTQLVDPNLPTEDHANKVERMTLAASLCIRPTPQRRPHIAVVLKLLNGDNGILKWARSEVGLSYESDGDEPVVTPPENNRNIQSYINLAFDVDDDSASVSSNDFIAANTSLEEYLRGRWSRSSSFD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.068893 | 0.268738 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0194900 | RBH | 1.317075 | 0.862894 | 7.415190 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08950 | RBH | 0.865296 | 0.675800 | 1.867415 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0194900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006080 | RBH | 0.406631 | 6.686346 | 5.164860 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006090 | RBH | 0.192469 | 7.365499 | 2.281194 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006090 | RBH | 0.433698 | 9.730131 | 11.455740 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006000 | RBH | 0.125798 | 0.466057 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005960 | RBH | 4.311796 | 42.680027 | 12.031088 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0078300 | RBH | 4.87065 | 20.1636 | 22.846847 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006010 | RBH | 0.175177 | 1.926698 | 1.467103 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0079300 | RBH | 5.7501675 | 18.313812 | 18.0589105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006060 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006060 | RBH | 2.338507 | 52.431084 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006090 | RBH | 0.105944 | 0.0 | 0.377211 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006070 | RBH | 0.072368 | 10.291030 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006100 | RBH | 0.108750 | 14.276423 | 2.686140 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005900 | RBH | 0.389701 | 20.091002 | 7.577031 |
