Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0008980 | OGI:10040510 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:13596688-13600101 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagagttcactgaaggacatcactgccccatctgttggccttgggtgcggaaggtaaacaatccctgcgtcaggattcagcaactcccatctagaagagataaattgagccagtgaaggAaaaaaaagaacagaaggtgagttaacactaagaataataaattgtacacatgtaatgttaattaaggtatggaagtttagtaaatacttgtaaccacaagagagatgatggagcatgatggtgagctgcagccttgccagcatgttgccggcgcagatcctctcgccgccaccgaacacctggtacgtgcctagctctgctgatttctgatcaattaatgcacttatgtgtaataaactacatatcgagtgatcgacacacatgttcaaaagaaaataataaactgctttgctaaaagaacccttgggaatgaaaataaactataaaaaatgtgagatgtatgtgctgggagtgagtgaagaggagaattaagagtggctaacatgatgaattgtaaggtgggggagatgccttttacttacttagggttgctaatgagtgtggaaaagatcaccatgaaagacttttatcagatcattcaaagagtggagaagagaatgaaatcatgggaaagtgggtatttatcttatggggcagagagattaaaattaattcatgtatgtccagtgctccaatgtatgctatggggttctaccttcttcctgagggTtttcattccaaaatggattctgctagaagcatattctactgccaaggggtgggggagaagaaaaaataccacatgattaagtgggaagctttgtgtagaccaaaagattttagggggatgggttttttagatactagaattatgaacatcagtctccttagcaagtgggttatgaaactggaaaatggagctttttccagagttcagaggcggggggctctcaattttggaaaagtttgcatcaatgcaaaaaaacacctgcaaagattggtgcaaaacaaagtacatgaaggcagtggtgtggacttctggggtgatgtttggtatggtgatgctcctttgaaggtgacttttcacaagttatatgaggttagtttgcagcaaaaagctactgtcatggagatgtgggctaatggcgactggaatctggtttttagaaggaacctgaaatcagaaagagaggtggaactgaatgatatgaagaatattctccaatatgtctagcttgatggggatagggatgaagtaatccgaccttacacaaaacataagtcttttattgctaaatctatgtataagctgttaacttttttttttggggagggggggagggttaaagatactgaaatgtggtctatttggaagggcaagattcctctaaaaataaaacatttcctttaccttgttgggagaggaaaacttccttgtgcttctcagttagtcaaaagaaattggaGgggtggggatgagctttgcaaactttgcaagagcaaagaaacaactaataatatcttgtatgtatggctgtccttttgctgtgtttacctggtgtgtaattaaggaagctttgtttctgagcaataaacctatctccttctaggagtgcactgggataatttgggacaggaggaagaagaatgcttggatggtgcttttagctagtgtttgttgggctctttggttgactcaaaatgattgggtttttaaggatgcttttgtttcatctcctctacaggttgtttacaggtcaatctcgtttgcctagaagtggaaggtgttcctaaaggaagaagagtgaaaggcgctcgaggattggcttgaagctatactggacaaactaaagcaagtgaggccaactatgctgcctgtagatctttagtgtctgttgggcattgtcttttgtgcctatcaagtctgagggggtggaacctgtgcttgtgcgaatctgtctgggttgtgggcattatatgtagctggagtccccagaaattactttttgttttatgtgtcgtgtccttttttcttgtatttcaagactctgtatccctctttcggctttctccaaaaaaccgggtcaaattaatgtttgatctgctctaaaaaaaacaatgatctatatatgggttaataacctcaagtatatgccctatatatgtctagaggttttatttttaaatttgtatctatcaaaatttaaagcaccaacgtatatatgtgtgtgtgtgtgtgattgtattgtttgtcttcccaatgttctcattccctattcagatgagctctactcatatacatacgaaataattactataacaaaatgtgtactggttaatattttgttgagataaattgcttagtgagttagtcttagaaggtttgtgttggttgggcacttggccctctcagttatgtgtgatgctagcctcgttggaagaggttccttgacctctttctttgcaaatatttctctttttgcaattaagtgaagcataattatcatgcgttttcaagaatttttctctttgcaaatatatatcttttttaatgaaatgaagcacaattattatgcgttttcaagaattaTtttttagattcatgacgatctctgtagcagctggcactccagcagttgatctttttactcagattaaaagctcatgtcacatttaaagctatgttcagttttttcagcattccaaagagagggccaatatatagagaagttttttcagcattgcatgtttggtgtagagacatatatataataagtagtttcgaaccaataacttacatcccatctatccgggttgaaacttaacggattgtcgtagtatgcagggtcgacatgtagtgatcggatccacacaataactttccacccttttggtattgtataccctgcatgtatatataccaacatcaatgttattttcctattgatatgattatttggtttaatccgttgatcagtttgctattgcctgcatgttataccaagataccaacatattggcaaataccatgcaaattgcatattatgcagacattgtatatgcatacaaattcttccattacattaaaaaaACAaaagtatttgggaaaacaaaccatctgtaattaatattttttgttcatttatttttatgtgctcacttttatattagtgattatcaaagttcctctaaaaaattatgaccaaagtatatgatataacgatacccacctcggtactcaacatctctgagtgccacgcggtgagccatcggagctatgttggccaatcggattgtttcttctactacctgcatatatgctcgactgaatatgtttatatggaataatcacgtgttcatgaattaagcatcttttattaatttactgcataaaccttggcagtgtacttcat
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| CDS seq | atgaagtacactgccaaggtagtagaagaaacaatccgattggccaacatagctccgatggctcaccgcgtggcactcagagatgttgagtaccgagggtatacaataccaaaagggtggaaagttattgtgtggatccgatcactacatgtcgaccctgcatactacgacaatccgttaagtttcaacccggatagatgggataaatcagcagagctaggcacgtaccaggtgttcggtggcggcgagaggatctgcgccggcaacatgctggcaaggctgcagctcaccatcatgctccatcatctctcttgtggttacaaatgggagttgctgaatcctgacgcagggattgtttaccttccgcacccaaggccaacagatggggcagtgatgtccttcagtgaactctga
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| Protein seq | MKYTAKVVEETIRLANIAPMAHRVALRDVEYRGYTIPKGWKVIVWIRSLHVDPAYYDNPLSFNPDRWDKSAELGTYQVFGGGERICAGNMLARLQLTIMLHHLSCGYKWELLNPDAGIVYLPHPRPTDGAVMSFSEL |
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| Function | Cytochrome P450 88A1 [UniProtKB/Swiss-Prot:Q43246] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0008980 | OsNaBo_10g0008980.01 | Chr10 | 13596688 | 13600101 | - | NAM | ||
| CDS seq | atgaagtacactgccaaggtagtagaagaaacaatccgattggccaacatagctccgatggctcaccgcgtggcactcagagatgttgagtaccgagggtatacaataccaaaagggtggaaagttattgtgtggatccgatcactacatgtcgaccctgcatactacgacaatccgttaagtttcaacccggatagatgggataaatcagcagagctaggcacgtaccaggtgttcggtggcggcgagaggatctgcgccggcaacatgctggcaaggctgcagctcaccatcatgctccatcatctctcttgtggttacaaatgggagttgctgaatcctgacgcagggattgtttaccttccgcacccaaggccaacagatggggcagtgatgtccttcagtgaactctga
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| Protein seq | MKYTAKVVEETIRLANIAPMAHRVALRDVEYRGYTIPKGWKVIVWIRSLHVDPAYYDNPLSFNPDRWDKSAELGTYQVFGGGERICAGNMLARLQLTIMLHHLSCGYKWELLNPDAGIVYLPHPRPTDGAVMSFSEL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0378100 | RBH | 4.481274 | 3.736843 | 11.340110 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g23180 | RBH | 3.662230 | 2.692024 | 3.040628 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0378100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008870 | RBH | 0.531071 | 0.0 | 2.778028 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008930 | RBH | 1.319703 | 0.0 | 6.093522 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008800 | RBH | 0.906054 | 0.0 | 8.231927 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009150 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008950 | RBH | 11.476762 | 0.0 | 25.617779 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0208200 | SBH | 3.077222 | 0.5732475 | 0.021308 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008910 | RBH | 0.328748 | 0.0 | 1.347400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0222000 | RBH | 4.0544365 | 0.772636 | 0.411052 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008730 | RBH | 0.159781 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008720 | RBH | 0.876010 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009110 | RBH | 5.630384 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008710 | RBH | 0.733232 | 0.0 | 1.137120 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009240 | RBH | 0.120135 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008970 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008960 | RBH | 0.000000 | 0.0 | 0.0 |
