Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0008000 | OGI:10037820 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:12619464-12622951 | ||||||||
| Gene Symbol | YK19 | ||||||||||
| DNA seq | atggtatgtgcagctatacacattgcagtcgtagcaatgctcgtctcccttacagcattagcaatagctgacgaatccgacaataaccaacgggaagctctgctctgcatcaaatcacacctctcaagcccagagggaggcgccctcaccacatggaacaatacctcgctcgacatgtgcacctggcgcggcgtgacatgctccagcgagctcccaaagcctcgtttggtcgtggccttggacatggaggcacagggcctcagcggagaaatcccaccctgcatctccaacctctcgtccctcacgagaatccacctccccaacaatggcctctccggtggcctcgcatccgcagccgatgttgccgggctccgatacctcaacctcagcttcaacgcgatcggcggtgcgatcccaaaacgccttggtacgcttcgcaacctttcgtccctggacttaacaaacaacaacattcatggcgagatcccgccgttgcttgggagctcatctgccttggaatccgtcggtctcgccgacaactacctgaccggaggaatcccattgttcttggctaatgcgtcctcgctccgctatctttccttgaagaacaatagcctctatgggagcatccctgcagcacttttcaacagctcaaccatcagggaaatataccttggagaaaacaatctttctggtgcaattccacccgtaacaatattcccttcccagatcaccaaccttgatcttacaacgaatagcctgacaggaggcataccaccatctctagggaatctctcatcgcttacagcactcttagctgcagaaaaccagttgcagggaagtataccggattttagtaaactatcggcgctacggtatcttgacctctcttacaacaatctttctggaactgtaaatccctccgtttacaacatgtcgtcaatcacatttctcggtttggccaacaacaatcttgaggggataatgcctcctggtataggaaacactcttcctaacatccaagttctgatgatgtctgacaatcattttcatggagaaatccctaaatctctagcaaatgcttccaacatgcagttcctgtatctggccaacaactctttgagaggggtgattccttctttcggcttgatgacagatttgcgggtcgtcatgctgtactcaaaccagttagaagctggagactgggcattcctgtcatccttgaagaattgctccaatttgcagaaactgcactttggcgaaaacaacctacgcggggacatgcccagctctgtagccaaattgccgaaaacattaacttcactagctcttccgtcaaactacatatctggcaccattcctttggagattggaaacctatctagcatatccctactttatcttggtaacaatctattgacagggagcatacctcatactcttggccaactaaacaatcttgttgtccttagcctttcacaaaacatattctctggagaaataccacaatccattggtaacttgaatcgattgactgaactctatttagcagaaaatcaactgactggaagaatacctgcaactttatcgaggtgccaacaattgttggcattgaacctttcaagtaatgcccttactggaagcataagcggagacatgtttatcaagctaaatcaattgagctggctactcgatttatcacacaaccaattcataaactccataccactagaacttggtagcttgataaatcttgcttctttgaacatttcccacaacaaactcacaggcaggatcccatctacacttggttcttgcgtccggttggaatcgcttcgtgtaggaggcaacttcctagagggaagtattccacaatcattagcaaatctcaggggcaccaaagtgctggatttctcccagaacaatttatctggtgcaataccggatttctttgggactttcacctcattacaatatctaaatatgtcatacaacaactttgaggggccaattccagtagatggaatctttgcggacagaaataaggtgtttgtccaaggaaatccacacctttgcaccaatgttccaatggatgagttgactgtctgctctgcttcagcatccaaaagaaagaataagctcattattccaatgttggcagctttttcatctataatcttactttcttcaatcctcggattatatttcttgatcgtcaatgttttcctgaaaaggaagtggaaatccaatgagcacatggatcacacctacatggaactgaaaacgttaacatatagtgatgtaagcaaagcaacaaataatttttcagcagccaacatagttggctctgggcattttgggacagtctatagaggtatactgcatacagaagacactatggtcgctgttaaggtgttcaagctcgatcaatgtggtgcattggacagctttatggcagagtgcaaagcactgaagaacatccgtcaccgaaatcttgtcaaggttataactgcatgctcaacttatgatccgatgggcagtgagttcaaggctctagtatttgaatatatggctaatggtagccttgagagccggcttcacacaaagtttgatcgatgtggtgatttgagtttgggagaaaggattagcatagcatttgatattgcttctgctctagagtaccttcacaaccaatgcattccacctgttgttcactgcgatttgaagccaagcaatgtacttttcaacaatgatgatgttgcatgcgtctgcgactttggtctggcaaggtcaattcgtgtttattcatctggaactcaaagcatatcaacaagcatggctgggccaagggggtctattgggtacattgctcctggtgagtaggttttctgagcatactgcagagtatcatacaatataaagaaattactattatatctcttatgattataatttggtactcctatgttttgctggttatctgaacctttttgttttcgaacaaagcagagtattatttaatagaaggaataagtattttatgattaacactatggttcattttactggtgatctgaactttttggtttcaaaacattgcagagtatggcatgggcagtcaaatctcaactgagggtgatgtctatagttatggcattattcttctggaaatgctaacaggaagacaccctaccaatgaaatatttactgatggcttgacactccgcatgtatgtcaatgcatcactttcacaaatcaaagacatacttgaccccaggcttattccagaaatgacagagcaaccttctaatcataccctgcaattgcatgaacacaagaagacaggtataatggacatctgtgctctacaactccttaaactcggtctgcaatgctctgaagagtcgccaaaagatcggccatttatacatgatatatatagtgaagtaacgtcaataaaagaagcattttttgccacgagcatttga
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| CDS seq | atggtatgtgcagctatacacattgcagtcgtagcaatgctcgtctcccttacagcattagcaatagctgacgaatccgacaataaccaacgggaagctctgctctgcatcaaatcacacctctcaagcccagagggaggcgccctcaccacatggaacaatacctcgctcgacatgtgcacctggcgcggcgtgacatgctccagcgagctcccaaagcctcgtttggtcgtggccttggacatggaggcacagggcctcagcggagaaatcccaccctgcatctccaacctctcgtccctcacgagaatccacctccccaacaatggcctctccggtggcctcgcatccgcagccgatgttgccgggctccgatacctcaacctcagcttcaacgcgatcggcggtgcgatcccaaaacgccttggtacgcttcgcaacctttcgtccctggacttaacaaacaacaacattcatggcgagatcccgccgttgcttgggagctcatctgccttggaatccgtcggtctcgccgacaactacctgaccggaggaatcccattgttcttggctaatgcgtcctcgctccgctatctttccttgaagaacaatagcctctatgggagcatccctgcagcacttttcaacagctcaaccatcagggaaatataccttggagaaaacaatctttctggtgcaattccacccgtaacaatattcccttcccagatcaccaaccttgatcttacaacgaatagcctgacaggaggcataccaccatctctagggaatctctcatcgcttacagcactcttagctgcagaaaaccagttgcagggaagtataccggattttagtaaactatcggcgctacggtatcttgacctctcttacaacaatctttctggaactgtaaatccctccgtttacaacatgtcgtcaatcacatttctcggtttggccaacaacaatcttgaggggataatgcctcctggtataggaaacactcttcctaacatccaagttctgatgatgtctgacaatcattttcatggagaaatccctaaatctctagcaaatgcttccaacatgcagttcctgtatctggccaacaactctttgagaggggtgattccttctttcggcttgatgacagatttgcgggtcgtcatgctgtactcaaaccagttagaagctggagactgggcattcctgtcatccttgaagaattgctccaatttgcagaaactgcactttggcgaaaacaacctacgcggggacatgcccagctctgtagccaaattgccgaaaacattaacttcactagctcttccgtcaaactacatatctggcaccattcctttggagattggaaacctatctagcatatccctactttatcttggtaacaatctattgacagggagcatacctcatactcttggccaactaaacaatcttgttgtccttagcctttcacaaaacatattctctggagaaataccacaatccattggtaacttgaatcgattgactgaactctatttagcagaaaatcaactgactggaagaatacctgcaactttatcgaggtgccaacaattgttggcattgaacctttcaagtaatgcccttactggaagcataagcggagacatgtttatcaagctaaatcaattgagctggctactcgatttatcacacaaccaattcataaactccataccactagaacttggtagcttgataaatcttgcttctttgaacatttcccacaacaaactcacaggcaggatcccatctacacttggttcttgcgtccggttggaatcgcttcgtgtaggaggcaacttcctagagggaagtattccacaatcattagcaaatctcaggggcaccaaagtgctggatttctcccagaacaatttatctggtgcaataccggatttctttgggactttcacctcattacaatatctaaatatgtcatacaacaactttgaggggccaattccagtagatggaatctttgcggacagaaataaggtgtttgtccaaggaaatccacacctttgcaccaatgttccaatggatgagttgactgtctgctctgcttcagcatccaaaagaaagaataagctcattattccaatgttggcagctttttcatctataatcttactttcttcaatcctcggattatatttcttgatcgtcaatgttttcctgaaaaggaagtggaaatccaatgagcacatggatcacacctacatggaactgaaaacgttaacatatagtgatgtaagcaaagcaacaaataatttttcagcagccaacatagttggctctgggcattttgggacagtctatagaggtatactgcatacagaagacactatggtcgctgttaaggtgttcaagctcgatcaatgtggtgcattggacagctttatggcagagtgcaaagcactgaagaacatccgtcaccgaaatcttgtcaaggttataactgcatgctcaacttatgatccgatgggcagtgagttcaaggctctagtatttgaatatatggctaatggtagccttgagagccggcttcacacaaagtttgatcgatgtggtgatttgagtttgggagaaaggattagcatagcatttgatattgcttctgctctagagtaccttcacaaccaatgcattccacctgttgttcactgcgatttgaagccaagcaatgtacttttcaacaatgatgatgttgcatgcgtctgcgactttggtctggcaaggtcaattcgtgtttattcatctggaactcaaagcatatcaacaagcatggctgggccaagggggtctattgggtacattgctcctgagtatggcatgggcagtcaaatctcaactgagggtgatgtctatagttatggcattattcttctggaaatgctaacaggaagacaccctaccaatgaaatatttactgatggcttgacactccgcatgtatgtcaatgcatcactttcacaaatcaaagacatacttgaccccaggcttattccagaaatgacagagcaaccttctaatcataccctgcaattgcatgaacacaagaagacaggtataatggacatctgtgctctacaactccttaaactcggtctgcaatgctctgaagagtcgccaaaagatcggccatttatacatgatatatatagtgaagtaacgtcaataaaagaagcattttttgccacgagcatttga
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| Protein seq | MVCAAIHIAVVAMLVSLTALAIADESDNNQREALLCIKSHLSSPEGGALTTWNNTSLDMCTWRGVTCSSELPKPRLVVALDMEAQGLSGEIPPCISNLSSLTRIHLPNNGLSGGLASAADVAGLRYLNLSFNAIGGAIPKRLGTLRNLSSLDLTNNNIHGEIPPLLGSSSALESVGLADNYLTGGIPLFLANASSLRYLSLKNNSLYGSIPAALFNSSTIREIYLGENNLSGAIPPVTIFPSQITNLDLTTNSLTGGIPPSLGNLSSLTALLAAENQLQGSIPDFSKLSALRYLDLSYNNLSGTVNPSVYNMSSITFLGLANNNLEGIMPPGIGNTLPNIQVLMMSDNHFHGEIPKSLANASNMQFLYLANNSLRGVIPSFGLMTDLRVVMLYSNQLEAGDWAFLSSLKNCSNLQKLHFGENNLRGDMPSSVAKLPKTLTSLALPSNYISGTIPLEIGNLSSISLLYLGNNLLTGSIPHTLGQLNNLVVLSLSQNIFSGEIPQSIGNLNRLTELYLAENQLTGRIPATLSRCQQLLALNLSSNALTGSISGDMFIKLNQLSWLLDLSHNQFINSIPLELGSLINLASLNISHNKLTGRIPSTLGSCVRLESLRVGGNFLEGSIPQSLANLRGTKVLDFSQNNLSGAIPDFFGTFTSLQYLNMSYNNFEGPIPVDGIFADRNKVFVQGNPHLCTNVPMDELTVCSASASKRKNKLIIPMLAAFSSIILLSSILGLYFLIVNVFLKRKWKSNEHMDHTYMELKTLTYSDVSKATNNFSAANIVGSGHFGTVYRGILHTEDTMVAVKVFKLDQCGALDSFMAECKALKNIRHRNLVKVITACSTYDPMGSEFKALVFEYMANGSLESRLHTKFDRCGDLSLGERISIAFDIASALEYLHNQCIPPVVHCDLKPSNVLFNNDDVACVCDFGLARSIRVYSSGTQSISTSMAGPRGSIGYIAPEYGMGSQISTEGDVYSYGIILLEMLTGRHPTNEIFTDGLTLRMYVNASLSQIKDILDPRLIPEMTEQPSNHTLQLHEHKKTGIMDICALQLLKLGLQCSEESPKDRPFIHDIYSEVTSIKEAFFATSI |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0008000 | OsNaBo_10g0008000.01 | Chr10 | 12619464 | 12622951 | + | NAM | ||
| CDS seq | atggtatgtgcagctatacacattgcagtcgtagcaatgctcgtctcccttacagcattagcaatagctgacgaatccgacaataaccaacgggaagctctgctctgcatcaaatcacacctctcaagcccagagggaggcgccctcaccacatggaacaatacctcgctcgacatgtgcacctggcgcggcgtgacatgctccagcgagctcccaaagcctcgtttggtcgtggccttggacatggaggcacagggcctcagcggagaaatcccaccctgcatctccaacctctcgtccctcacgagaatccacctccccaacaatggcctctccggtggcctcgcatccgcagccgatgttgccgggctccgatacctcaacctcagcttcaacgcgatcggcggtgcgatcccaaaacgccttggtacgcttcgcaacctttcgtccctggacttaacaaacaacaacattcatggcgagatcccgccgttgcttgggagctcatctgccttggaatccgtcggtctcgccgacaactacctgaccggaggaatcccattgttcttggctaatgcgtcctcgctccgctatctttccttgaagaacaatagcctctatgggagcatccctgcagcacttttcaacagctcaaccatcagggaaatataccttggagaaaacaatctttctggtgcaattccacccgtaacaatattcccttcccagatcaccaaccttgatcttacaacgaatagcctgacaggaggcataccaccatctctagggaatctctcatcgcttacagcactcttagctgcagaaaaccagttgcagggaagtataccggattttagtaaactatcggcgctacggtatcttgacctctcttacaacaatctttctggaactgtaaatccctccgtttacaacatgtcgtcaatcacatttctcggtttggccaacaacaatcttgaggggataatgcctcctggtataggaaacactcttcctaacatccaagttctgatgatgtctgacaatcattttcatggagaaatccctaaatctctagcaaatgcttccaacatgcagttcctgtatctggccaacaactctttgagaggggtgattccttctttcggcttgatgacagatttgcgggtcgtcatgctgtactcaaaccagttagaagctggagactgggcattcctgtcatccttgaagaattgctccaatttgcagaaactgcactttggcgaaaacaacctacgcggggacatgcccagctctgtagccaaattgccgaaaacattaacttcactagctcttccgtcaaactacatatctggcaccattcctttggagattggaaacctatctagcatatccctactttatcttggtaacaatctattgacagggagcatacctcatactcttggccaactaaacaatcttgttgtccttagcctttcacaaaacatattctctggagaaataccacaatccattggtaacttgaatcgattgactgaactctatttagcagaaaatcaactgactggaagaatacctgcaactttatcgaggtgccaacaattgttggcattgaacctttcaagtaatgcccttactggaagcataagcggagacatgtttatcaagctaaatcaattgagctggctactcgatttatcacacaaccaattcataaactccataccactagaacttggtagcttgataaatcttgcttctttgaacatttcccacaacaaactcacaggcaggatcccatctacacttggttcttgcgtccggttggaatcgcttcgtgtaggaggcaacttcctagagggaagtattccacaatcattagcaaatctcaggggcaccaaagtgctggatttctcccagaacaatttatctggtgcaataccggatttctttgggactttcacctcattacaatatctaaatatgtcatacaacaactttgaggggccaattccagtagatggaatctttgcggacagaaataaggtgtttgtccaaggaaatccacacctttgcaccaatgttccaatggatgagttgactgtctgctctgcttcagcatccaaaagaaagaataagctcattattccaatgttggcagctttttcatctataatcttactttcttcaatcctcggattatatttcttgatcgtcaatgttttcctgaaaaggaagtggaaatccaatgagcacatggatcacacctacatggaactgaaaacgttaacatatagtgatgtaagcaaagcaacaaataatttttcagcagccaacatagttggctctgggcattttgggacagtctatagaggtatactgcatacagaagacactatggtcgctgttaaggtgttcaagctcgatcaatgtggtgcattggacagctttatggcagagtgcaaagcactgaagaacatccgtcaccgaaatcttgtcaaggttataactgcatgctcaacttatgatccgatgggcagtgagttcaaggctctagtatttgaatatatggctaatggtagccttgagagccggcttcacacaaagtttgatcgatgtggtgatttgagtttgggagaaaggattagcatagcatttgatattgcttctgctctagagtaccttcacaaccaatgcattccacctgttgttcactgcgatttgaagccaagcaatgtacttttcaacaatgatgatgttgcatgcgtctgcgactttggtctggcaaggtcaattcgtgtttattcatctggaactcaaagcatatcaacaagcatggctgggccaagggggtctattgggtacattgctcctgagtatggcatgggcagtcaaatctcaactgagggtgatgtctatagttatggcattattcttctggaaatgctaacaggaagacaccctaccaatgaaatatttactgatggcttgacactccgcatgtatgtcaatgcatcactttcacaaatcaaagacatacttgaccccaggcttattccagaaatgacagagcaaccttctaatcataccctgcaattgcatgaacacaagaagacaggtataatggacatctgtgctctacaactccttaaactcggtctgcaatgctctgaagagtcgccaaaagatcggccatttatacatgatatatatagtgaagtaacgtcaataaaagaagcattttttgccacgagcatttga
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| Protein seq | MVCAAIHIAVVAMLVSLTALAIADESDNNQREALLCIKSHLSSPEGGALTTWNNTSLDMCTWRGVTCSSELPKPRLVVALDMEAQGLSGEIPPCISNLSSLTRIHLPNNGLSGGLASAADVAGLRYLNLSFNAIGGAIPKRLGTLRNLSSLDLTNNNIHGEIPPLLGSSSALESVGLADNYLTGGIPLFLANASSLRYLSLKNNSLYGSIPAALFNSSTIREIYLGENNLSGAIPPVTIFPSQITNLDLTTNSLTGGIPPSLGNLSSLTALLAAENQLQGSIPDFSKLSALRYLDLSYNNLSGTVNPSVYNMSSITFLGLANNNLEGIMPPGIGNTLPNIQVLMMSDNHFHGEIPKSLANASNMQFLYLANNSLRGVIPSFGLMTDLRVVMLYSNQLEAGDWAFLSSLKNCSNLQKLHFGENNLRGDMPSSVAKLPKTLTSLALPSNYISGTIPLEIGNLSSISLLYLGNNLLTGSIPHTLGQLNNLVVLSLSQNIFSGEIPQSIGNLNRLTELYLAENQLTGRIPATLSRCQQLLALNLSSNALTGSISGDMFIKLNQLSWLLDLSHNQFINSIPLELGSLINLASLNISHNKLTGRIPSTLGSCVRLESLRVGGNFLEGSIPQSLANLRGTKVLDFSQNNLSGAIPDFFGTFTSLQYLNMSYNNFEGPIPVDGIFADRNKVFVQGNPHLCTNVPMDELTVCSASASKRKNKLIIPMLAAFSSIILLSSILGLYFLIVNVFLKRKWKSNEHMDHTYMELKTLTYSDVSKATNNFSAANIVGSGHFGTVYRGILHTEDTMVAVKVFKLDQCGALDSFMAECKALKNIRHRNLVKVITACSTYDPMGSEFKALVFEYMANGSLESRLHTKFDRCGDLSLGERISIAFDIASALEYLHNQCIPPVVHCDLKPSNVLFNNDDVACVCDFGLARSIRVYSSGTQSISTSMAGPRGSIGYIAPEYGMGSQISTEGDVYSYGIILLEMLTGRHPTNEIFTDGLTLRMYVNASLSQIKDILDPRLIPEMTEQPSNHTLQLHEHKKTGIMDICALQLLKLGLQCSEESPKDRPFIHDIYSEVTSIKEAFFATSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.145737 | 0.000000 | 0.361045 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0360800 | RBH | 0.224108 | 0.297454 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13780 | SBH | 0.210483 | 0.0 | 0.048997 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0360800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007910 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007950 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007870 | RBH | 0.109902 | 0.681411 | 1.927489 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008130 | RBH | 0.021767 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008000 | RBH | 0.0 | 0.0 | 2.505485 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0193500 | RBH | 0.194881 | 0.398864 | 0.230219 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007960 | RBH | 0.000000 | 0.0 | 0.055940 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0207000 | RBH | 0.273813 | 0.796513 | 2.069764 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0007690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007770 | RBH | 0.156086 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008170 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007650 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008260 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G007980 | RBH | 0.000000 | 0.000000 | 0.048031 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0009740 | SBH | 0.0 | 0.0 | 0.0 |
