Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0009740 | OGI:02021890 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:7472958-7476776 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatcaagctgcatcccggcaacaaatcattgaactatacaagaatttttattacatgataggaattgctgcttgaaatgcatcagtaaataacagtgtgcaaatgtatcgtgttgtagcagcaaaaacatctgtagcttactgctgtagtgatcaagaaacttcggaagataaattcggcagtgctgcagacaccaatttattacctaacgttcatgcttcattcctcagtgttccacttctattgacaccattttattacctaacgtcaaatgctcgtggcgaaaaatgcttcctttattgacattacctcactatatacatcatgtatcaatggccgatcttttggcgactcttcagagcattccaggccaagtttaaggagttgtagagcacagatatccattatacctgtcttgtgttcatgcaattgcagggtatgattagaaggttgttctgtcatttcaggaataagcctggggtcaagtatgtctttgatctgtgaaagtgatgcattgacatacatgcggagtgtgaagccatcagtaaatatttcattggtagggtgtcttcctgttagcatttccagaagaataatgccataactatagacatcaccctcagttgagatttgactgcccatgccatactctgcaatgttttgaaaccaaaaagctcagatcaccagtaaaatgaaccatattgttaatcataaaatactgaagtccTttttattaaatgatactctgctttgtttgaaaacaaaagattcagataaccagcaaaatataggagtaccatattataatcataagagaTttttttagataatgggaatttttaaacccggcttctacagcaacgggggtgtataatcataagagatataatcgtaatttcgttatattaaataaatgattttctgcagtgtgctctgaaaagtgaaaaccaactcaccaggagcaatgtacccaatagacccccttggcccagccatgcttcttgatatgctttgagttccggatgaatattcacgaattgaccttgccagaccaaagtcacagacgcaggcaacatagtcatggttgaaaagtacattgcttggcttcaaatcgcagtgaacaacaggtggaatgcattggttgtgaaggtattctagagcagaagcaatatcaaatgctatgctaatcctttctcccaaactcaaatcaccacatggatcaaaccttgtgtgtagtctgctttctaggctaccattagccatatattcaaatactagagccttgaactcactgcccatcggatcataagttgagcatgcagttatcaccttgacaagatttcggtgacggatgttcttcaatgctttgcactctgccataaagctatccaatgcaccacactgatcgagcttgaacaccttaacagcgaccatagtgtcttctgtatccagtatacctctatagactgtcccaaaatgcccagagccgactatgttggctgcagaaaaattatttgttgctttgctaacatcactgtatgttaactttttcagctccatgtaggagtgatctatgtgctcattggatttccccttccttttcaggaaaacatttacgatcaacaaatataatccgaggattgaagaaagtaagacaatagatgaaaaaactgccaacattggaataacgagcttatgctttcttttggatgctgaagcagagcagacagtcaactcgtccattggaacattggtgcaaaggtgtggatttccttggacaaacaccttatctctgtcagaaaatattccaccaactggaattggcccctcaaagttgttgtatgacatatttagatactgtaatgaggtgaaagtcccaaagaaatccggtattgcaccagataaattgttcgcggagaaatccagcactttggtgcctctgaggtttgctaatgattgtggaatacttccctctaggaggttgcctgctacacgaagtgattccaatcggacgcaagaaccaagtgtagatgggatcctgcctgtgagtctgttgtgggaaatgttcaaagaagcaagatttatcaggctaccaaattctagtggtatggagcttatgaattggttgtgtgataaatcaagtagccaactcaattgatttagcttgacaaacatgcctccgcttatgcttccagtaagggcattacttgaaaggttcaatgccaacaattgttggcacctcgctaaagttgtaggtattcttccactcagttgattttctgataaataaagttcagccaattgattcaagttaccaatggattgtggtatttctcctgaaaatttgttttgtgaaaggctaaggacaacaagattgtttagttggccaagagtatgaggtatgctccctgtcaatagattgttatcaagatagagtagggacatgctagataggttcccaatctccaagggaatggtgccagatatatagtttgacgggagagcgagtgaagttaatgttttcggcaggtcggctacagagctgggcatgtccccacgtaggttattttcaccaaagtgcagtttcagcagattggagcaatttttcagggatgataggaatgcccagtctccagcttctaactggtttgagtacagcatgacaacctgcaaatctgtcatcaaactaaaagaaggaatcacccctctcaaagagttgttggccaggtacagaaactgcatgttggaagcattagctagagatttagggatttctccaacaaaatggttgttagacatcatgagaacttggatgttaggaagtgtgtttcctatgtcaggaggcatcatcccctcaagattgttgttggccaaaccgagaaaactgatggacgacatgttgtaaatggagggatttacagccccagaaagattgttgtaagagaggtcaagatattgtagcgccgacagcttactaaaatccggtatacttccctgcaactggttttgtgcagctaaaaatgctgtaagcgatgagagattcgctagagatggtggtatgcctcctgacaggctatttgttgtaagatcaaggttggtgatccgtgaagtgaacatcgttacgggtggaattgcaccagaaagattgtttttcctaaggtatatctccctgatggttgagctgttgaaaagtgctgcagggatgctcccgtagaggctattgttcttcagtgaaagatagcggagtgacgacgcattagccaagaacaatgggatctctccggtcaggtagttgtccgcgaggccgacagactccaacgccaatgagctcccaagcaatggtgggattctgccatggaggttgttgctggttaggtccagggatgagaggttaggaagcgtaccgaggcctcgtgggatctcaccactgatcgcgttgaagctgaggttgaggtactggagcctggccacatcggctgtgaatgtgaggccacctgagaggccattgttggggaggtggattctcgcgagggacgagaggttggagatgcagggtgggatctctccggtgaggcctcctgcctccatgtccagggccacaaccacacgaggtcgttcttggagcttgatggagcaagtgacgccgcgccaggtgcagaaatcgggtgagatggtgttgctccatgtggagaaggcggacccgtttgggcttgaaagatgtgatttcaggcaaagcagtgcttcccgttcatcagctaatgctgtcagggtggagaagaagaggattgcagcgactgcaaccagagctgcacatgccat
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| CDS seq | atggcatgtgcagctctggttgcagtcgctgcaatcctcttcttctccaccctgacagcattagctgatgaacgggaagcactgctttgcctgaaatcacatctttcaagcccaaacgggtccgccttctccacatggagcaacaccatctcacccgatttctgcacctggcgcggcgtcacttgctccatcaagctccaagaacgacctcgtgtggttgtggccctggacatggaggcaggaggcctcaccggagagatcccaccctgcatctccaacctctcgtccctcgcgagaatccacctccccaacaatggcctctcaggtggcctcacattcacagccgatgtggccaggctccagtacctcaacctcagcttcaacgcgatcagtggtgagatcccacgaggcctcggtacgcttcctaacctctcatccctggacctaaccagcaacaacctccatggcagaatcccaccattgcttgggagctcattggcgttggagtctgtcggcctcgcggacaactacctgaccggagagatcccattgttcttggctaatgcgtcgtcactccgctatctttcactgaagaacaatagcctctacgggagcatccctgcagcacttttcaacagctcaaccatcagggagatataccttaggaaaaacaatctttctggtgcaattccacccgtaacgatgttcacttcacggatcaccaaccttgatcttacaacaaatagcctgtcaggaggcataccaccatctctagcgaatctctcatcgcttacagcatttttagctgcacaaaaccagttgcagggaagtataccggattttagtaagctgtcggcgctacaatatcttgacctctcttacaacaatctttctggggctgtaaatccctccatttacaacatgtcgtccatcagttttctcggtttggccaacaacaatcttgaggggatgatgcctcctgacataggaaacacacttcctaacatccaagttctcatgatgtctaacaaccattttgttggagaaatccctaaatctctagctaatgcttccaacatgcagtttctgtacctggccaacaactctttgagaggggtgattccttcttttagtttgatgacagatttgcaggttgtcatgctgtactcaaaccagttagaagctggagactgggcattcctatcatccctgaaaaattgctccaatctgctgaaactgcactttggtgaaaataacctacgtggggacatgcccagctctgtagccgacctgccgaaaacattaacttcactcgctctcccgtcaaactatatatctggcaccattcccttggagattgggaacctatctagcatgtccctactctatcttgataacaatctattgacagggagcatacctcatactcttggccaactaaacaatcttgttgtccttagcctttcacaaaacaaattttcaggagaaataccacaatccattggtaacttgaatcaattggctgaactttatttatcagaaaatcaactgagtggaagaatacctacaactttagcgaggtgccaacaattgttggcattgaacctttcaagtaatgcccttactggaagcataagcggaggcatgtttgtcaagctaaatcaattgagttggctacttgatttatcacacaaccaattcataagctccataccactagaatttggtagcctgataaatcttgcttctttgaacatttcccacaacagactcacaggcaggatcccatctacacttggttcttgcgtccgattggaatcacttcgtgtagcaggcaacctcctagagggaagtattccacaatcattagcaaacctcagaggcaccaaagtgctggatttctccgcgaacaatttatctggtgcaataccggatttctttgggactttcacctcattacagtatctaaatatgtcatacaacaactttgaggggccaattccagttggtggaatattttctgacagagataaggtgtttgtccaaggaaatccacacctttgcaccaatgttccaatggacgagttgactgtctgctctgcttcagcatccaaaagaaagcataagctcgttattccaatgttggcagttttttcatctattgtcttactttcttcaatcctcggattatatttgttgatcgtaaatgttttcctgaaaaggaaggggaaatccaatgagcacatagatcactcctacatggagctgaaaaagttaacatacagtgatgttagcaaagcaacaaataatttttctgcagccaacatagtcggctctgggcattttgggacagtctatagaggtatactggatacagaagacactatggtcgctgttaaggtgttcaagctcgatcagtgtggtgcattggatagctttatggcagagtgcaaagcattgaagaacatccgtcaccgaaatcttgtcaaggtgataactgcatgctcaacttatgatccgatgggcagtgagttcaaggctctagtatttgaatatatggctaatggtagcctagaaagcagactacacacaaggtttgatccatgtggtgatttgagtttgggagaaaggattagcatagcatttgatattgcttctgctctagaataccttcacaaccaatgcattccacctgttgttcactgcgatttgaagccaagcaatgtacttttcaaccatgactatgttgcctgcgtctgtgactttggtctggcaaggtcaattcgtgaatattcatccggaactcaaagcatatcaagaagcatggctgggccaagggggtctattgggtacattgctcctgagtatggcatgggcagtcaaatctcaactgagggtgatgtctatagttatggcattattcttctggaaatgctaacaggaagacaccctaccaatgaaatatttactgatggcttcacactccgcatgtatgtcaatgcatcactttcacagatcaaagacatacttgaccccaggcttattcctgaaatgacagaacaaccttctaatcataccctgcaattgcatgaacacaagacaggtataatggatatctgtgctctacaactccttaaacttggcctggaatgctctgaagagtcgccaaaagatcggccattgatacatgatgtatatagtgaggtaatgtcaataaaggaagcatttttcgccacgagcatttga
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| Protein seq | MACAALVAVAAILFFSTLTALADEREALLCLKSHLSSPNGSAFSTWSNTISPDFCTWRGVTCSIKLQERPRVVVALDMEAGGLTGEIPPCISNLSSLARIHLPNNGLSGGLTFTADVARLQYLNLSFNAISGEIPRGLGTLPNLSSLDLTSNNLHGRIPPLLGSSLALESVGLADNYLTGEIPLFLANASSLRYLSLKNNSLYGSIPAALFNSSTIREIYLRKNNLSGAIPPVTMFTSRITNLDLTTNSLSGGIPPSLANLSSLTAFLAAQNQLQGSIPDFSKLSALQYLDLSYNNLSGAVNPSIYNMSSISFLGLANNNLEGMMPPDIGNTLPNIQVLMMSNNHFVGEIPKSLANASNMQFLYLANNSLRGVIPSFSLMTDLQVVMLYSNQLEAGDWAFLSSLKNCSNLLKLHFGENNLRGDMPSSVADLPKTLTSLALPSNYISGTIPLEIGNLSSMSLLYLDNNLLTGSIPHTLGQLNNLVVLSLSQNKFSGEIPQSIGNLNQLAELYLSENQLSGRIPTTLARCQQLLALNLSSNALTGSISGGMFVKLNQLSWLLDLSHNQFISSIPLEFGSLINLASLNISHNRLTGRIPSTLGSCVRLESLRVAGNLLEGSIPQSLANLRGTKVLDFSANNLSGAIPDFFGTFTSLQYLNMSYNNFEGPIPVGGIFSDRDKVFVQGNPHLCTNVPMDELTVCSASASKRKHKLVIPMLAVFSSIVLLSSILGLYLLIVNVFLKRKGKSNEHIDHSYMELKKLTYSDVSKATNNFSAANIVGSGHFGTVYRGILDTEDTMVAVKVFKLDQCGALDSFMAECKALKNIRHRNLVKVITACSTYDPMGSEFKALVFEYMANGSLESRLHTRFDPCGDLSLGERISIAFDIASALEYLHNQCIPPVVHCDLKPSNVLFNHDYVACVCDFGLARSIREYSSGTQSISRSMAGPRGSIGYIAPEYGMGSQISTEGDVYSYGIILLEMLTGRHPTNEIFTDGFTLRMYVNASLSQIKDILDPRLIPEMTEQPSNHTLQLHEHKTGIMDICALQLLKLGLECSEESPKDRPLIHDVYSEVMSIKEAFFATSI |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0009740 | OsNaBo_02g0009740.01 | Chr02 | 7472958 | 7476776 | - | NAM | ||
| CDS seq | atggcatgtgcagctctggttgcagtcgctgcaatcctcttcttctccaccctgacagcattagctgatgaacgggaagcactgctttgcctgaaatcacatctttcaagcccaaacgggtccgccttctccacatggagcaacaccatctcacccgatttctgcacctggcgcggcgtcacttgctccatcaagctccaagaacgacctcgtgtggttgtggccctggacatggaggcaggaggcctcaccggagagatcccaccctgcatctccaacctctcgtccctcgcgagaatccacctccccaacaatggcctctcaggtggcctcacattcacagccgatgtggccaggctccagtacctcaacctcagcttcaacgcgatcagtggtgagatcccacgaggcctcggtacgcttcctaacctctcatccctggacctaaccagcaacaacctccatggcagaatcccaccattgcttgggagctcattggcgttggagtctgtcggcctcgcggacaactacctgaccggagagatcccattgttcttggctaatgcgtcgtcactccgctatctttcactgaagaacaatagcctctacgggagcatccctgcagcacttttcaacagctcaaccatcagggagatataccttaggaaaaacaatctttctggtgcaattccacccgtaacgatgttcacttcacggatcaccaaccttgatcttacaacaaatagcctgtcaggaggcataccaccatctctagcgaatctctcatcgcttacagcatttttagctgcacaaaaccagttgcagggaagtataccggattttagtaagctgtcggcgctacaatatcttgacctctcttacaacaatctttctggggctgtaaatccctccatttacaacatgtcgtccatcagttttctcggtttggccaacaacaatcttgaggggatgatgcctcctgacataggaaacacacttcctaacatccaagttctcatgatgtctaacaaccattttgttggagaaatccctaaatctctagctaatgcttccaacatgcagtttctgtacctggccaacaactctttgagaggggtgattccttcttttagtttgatgacagatttgcaggttgtcatgctgtactcaaaccagttagaagctggagactgggcattcctatcatccctgaaaaattgctccaatctgctgaaactgcactttggtgaaaataacctacgtggggacatgcccagctctgtagccgacctgccgaaaacattaacttcactcgctctcccgtcaaactatatatctggcaccattcccttggagattgggaacctatctagcatgtccctactctatcttgataacaatctattgacagggagcatacctcatactcttggccaactaaacaatcttgttgtccttagcctttcacaaaacaaattttcaggagaaataccacaatccattggtaacttgaatcaattggctgaactttatttatcagaaaatcaactgagtggaagaatacctacaactttagcgaggtgccaacaattgttggcattgaacctttcaagtaatgcccttactggaagcataagcggaggcatgtttgtcaagctaaatcaattgagttggctacttgatttatcacacaaccaattcataagctccataccactagaatttggtagcctgataaatcttgcttctttgaacatttcccacaacagactcacaggcaggatcccatctacacttggttcttgcgtccgattggaatcacttcgtgtagcaggcaacctcctagagggaagtattccacaatcattagcaaacctcagaggcaccaaagtgctggatttctccgcgaacaatttatctggtgcaataccggatttctttgggactttcacctcattacagtatctaaatatgtcatacaacaactttgaggggccaattccagttggtggaatattttctgacagagataaggtgtttgtccaaggaaatccacacctttgcaccaatgttccaatggacgagttgactgtctgctctgcttcagcatccaaaagaaagcataagctcgttattccaatgttggcagttttttcatctattgtcttactttcttcaatcctcggattatatttgttgatcgtaaatgttttcctgaaaaggaaggggaaatccaatgagcacatagatcactcctacatggagctgaaaaagttaacatacagtgatgttagcaaagcaacaaataatttttctgcagccaacatagtcggctctgggcattttgggacagtctatagaggtatactggatacagaagacactatggtcgctgttaaggtgttcaagctcgatcagtgtggtgcattggatagctttatggcagagtgcaaagcattgaagaacatccgtcaccgaaatcttgtcaaggtgataactgcatgctcaacttatgatccgatgggcagtgagttcaaggctctagtatttgaatatatggctaatggtagcctagaaagcagactacacacaaggtttgatccatgtggtgatttgagtttgggagaaaggattagcatagcatttgatattgcttctgctctagaataccttcacaaccaatgcattccacctgttgttcactgcgatttgaagccaagcaatgtacttttcaaccatgactatgttgcctgcgtctgtgactttggtctggcaaggtcaattcgtgaatattcatccggaactcaaagcatatcaagaagcatggctgggccaagggggtctattgggtacattgctcctgagtatggcatgggcagtcaaatctcaactgagggtgatgtctatagttatggcattattcttctggaaatgctaacaggaagacaccctaccaatgaaatatttactgatggcttcacactccgcatgtatgtcaatgcatcactttcacagatcaaagacatacttgaccccaggcttattcctgaaatgacagaacaaccttctaatcataccctgcaattgcatgaacacaagacaggtataatggatatctgtgctctacaactccttaaacttggcctggaatgctctgaagagtcgccaaaagatcggccattgatacatgatgtatatagtgaggtaatgtcaataaaggaagcatttttcgccacgagcatttga
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| Protein seq | MACAALVAVAAILFFSTLTALADEREALLCLKSHLSSPNGSAFSTWSNTISPDFCTWRGVTCSIKLQERPRVVVALDMEAGGLTGEIPPCISNLSSLARIHLPNNGLSGGLTFTADVARLQYLNLSFNAISGEIPRGLGTLPNLSSLDLTSNNLHGRIPPLLGSSLALESVGLADNYLTGEIPLFLANASSLRYLSLKNNSLYGSIPAALFNSSTIREIYLRKNNLSGAIPPVTMFTSRITNLDLTTNSLSGGIPPSLANLSSLTAFLAAQNQLQGSIPDFSKLSALQYLDLSYNNLSGAVNPSIYNMSSISFLGLANNNLEGMMPPDIGNTLPNIQVLMMSNNHFVGEIPKSLANASNMQFLYLANNSLRGVIPSFSLMTDLQVVMLYSNQLEAGDWAFLSSLKNCSNLLKLHFGENNLRGDMPSSVADLPKTLTSLALPSNYISGTIPLEIGNLSSMSLLYLDNNLLTGSIPHTLGQLNNLVVLSLSQNKFSGEIPQSIGNLNQLAELYLSENQLSGRIPTTLARCQQLLALNLSSNALTGSISGGMFVKLNQLSWLLDLSHNQFISSIPLEFGSLINLASLNISHNRLTGRIPSTLGSCVRLESLRVAGNLLEGSIPQSLANLRGTKVLDFSANNLSGAIPDFFGTFTSLQYLNMSYNNFEGPIPVGGIFSDRDKVFVQGNPHLCTNVPMDELTVCSASASKRKHKLVIPMLAVFSSIVLLSSILGLYLLIVNVFLKRKGKSNEHIDHSYMELKKLTYSDVSKATNNFSAANIVGSGHFGTVYRGILDTEDTMVAVKVFKLDQCGALDSFMAECKALKNIRHRNLVKVITACSTYDPMGSEFKALVFEYMANGSLESRLHTRFDPCGDLSLGERISIAFDIASALEYLHNQCIPPVVHCDLKPSNVLFNHDYVACVCDFGLARSIREYSSGTQSISRSMAGPRGSIGYIAPEYGMGSQISTEGDVYSYGIILLEMLTGRHPTNEIFTDGFTLRMYVNASLSQIKDILDPRLIPEMTEQPSNHTLQLHEHKTGIMDICALQLLKLGLECSEESPKDRPLIHDVYSEVMSIKEAFFATSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0231700 | RBH | 0.300606 | 0.0 | 0.183832 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13780 | RBH | 0.210483 | 0.0 | 0.048997 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0231700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009850 | RBH | 0.0 | 0.746974 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0009920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009800 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024590 | SBH | 5.118042 | 2.253283 | 6.222695 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0124500 | RBH | 0.003612 | 0.3578465 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0009550 | RBH | 0.0 | 0.0 | 0.037552 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0127500 | RBH | 0.067071 | 3.098393 | 0.0638275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0010020 | RBH | 0.025242 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010010 | RBH | 0.0 | 3.841425 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010030 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0009720 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G009910 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019630 | RBH | 0.769279 | 11.668097 | 2.829287 |
