Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0003720 | OGI:10014600 | 11/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:4686108-4689080 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagagggtgttgttgccttgctgatactgaagctcggttttgccttggggagagaaacttcaatcatgggtgcaaagaagctcttccatgaagcaactgctctttcacggctattccaaggaatccatgaagttaaggaggagctggagggcatgcaatcctttctccgaggtgccgagcggttcaaggacacggatgaaaccactgccaacttcatcaagaagatccgtgacctcgctttcgagatcgaggatattgtcgatgagttcacttacatgctggaggatagatcacatggagcgttggcctccaagatcgtaaagagcatcaaacatatcaaggcatggcgtcatctcgcatccaagctggaatacatcaagctcaagatagagagtgctgataggagaaaggtgaggtacgacatgagaggaatttcaagtgtagctggcaacattgacgattgctcgacatcttcaggtaattttgcaagggaagaagatcttgtggggattggaaaggatggggagttgttgacacaatggttgaaaaacaatttggaacagcaaagaagcataattactacagtttggggaatgggtggagtgggcaagacaacattggttgcttatgtttactatgctgtgaagacagagtttgatgcaacaggatgggtaactgtctctaaaagttaccaaattgaagacttactgaagcagatcatcagaggattcatcaacaatgatccacagggggacttgtataaccacatcgatttttctactatgagaatcacaactttaattgagcacatccgtaattatctgcatggtaaaaggtatgtcctaattcttgatgatgtttgggctgtggatgtttggtttaagataagagctgcatttccttcagatagcaccggtcgatttgtcattacatctaggatacatgaagtagcactgcttgcaacagggaagcgtataattcagttggaaccacttggaccacaacattcatgggaattattctgcaaggaagcattctggaggaatgaagaaaaagtatgcccaccagaacttgagattgtggctcaaaaacttttggacaggtgtagtggcctgcccattgcaattgcatgtttaggtcgcctgctgtcgttcaaagaaccaagctatgatgtttgggagaatctttacaaggatgtgcaatcacagctgactaataatgtgatccttgacatcaatgttgttctcaaagttagcttggaggagcttccacatgatctaaagaactgttttctacactgcaccgtgtttccagaggactacttgatgtcaaggaagaggctagtgaggcattggctgacagcaggattcatcagagaaacaagcaacaaaaccatggaggatgttgcaaacgacaatctgaataaactcgtaaaccgaagcctattgcaagtagtagagaggaatcgaaatggagaagtgcatacctgtcgaatgcatgatattatccgcattcttgctctggcaaaatcagaagaggaatgtttttgtaaagtttacgatggttccagtgcttttctagcagagggtacacaacgtttatcgatccagagttcaaatgtcaatcagttgtctcgatcaggtgcacctcatctgcgccacctctacatctttgggagtggtctgagtattgattcactgacaacctttctgaaatctctcagattgttgtcatctttagatttggaagggattaatatcaagagcctgccatgtgttgtgttcaacctgtacaatctaagattcttaggtcttaaagatactaacattgaagttatcccacgactgattggaagacttcgacacttggaagtcctagatgctcgcaatactaaactgatgaccttgcctaaggacattgtgcaacttcaaaaattgcgatatctaaatatagatacgattccagaggaagcagataggaaggttgtgttttttggtggaatcagggtgcctactggaatagaacagttgacaaggttgcaaacgctgcaattggttgaagcaagcaccgaaactctatgccatattggatctttgacgcagttgagggctttcgctgtcaacaaagttagaaacgaacattgtgtccacttgtgcaatgctatcatgaaaatgagtcatcttgttcaactaaaaatcaagggaatagatgagaaggaaatcttgcagctggaagaacttcatatacctcccactctttcaacactctcattaggaggacagctaagtggaaaatcattgcctcatcttattttgtcacataagagtagcagtaacatcactaggttaagcctcgccttctccaaactcagtgaggactcatttagctgtctactgaacttggatagtttgtacgtacttcatcttttgaaagcctgggaaggaaatcggctatacttccatgcaacatcgtttccgaaactcaagcgcttattgatatgggatgcaccctatctgaatgaaattgagatagaacaaggtgcgatgccaagactggttaagctagttctgagagacctcccaaaattgaagacgcttcctcatggcattgagcatcttagagtactcgaggagttagagctccgagatacttcagaggaacttatagagaagcttcagcagaaaggacaacacatggcatgcgaagctcataagagtatcgaccatatcaagagtatcagcattcatggcacccgatagaatgtcaaggaaagtattggaagattgcagatcagcagctaacaagttacatcatgttagcctcaactcaactcacaaatattcacttataagcatgcatgttcaaactgtaatttttgggtcaccacaaaacctttggattacaccaaaacatcattacccttgtaatctgttttttggtattatgcaaactaacaggttaccagtgtc
More
|
||||||||||
| CDS seq | atggcagagggtgttgttgccttgctgatactgaagctcggttttgccttggggagagaaacttcaatcatgggtgcaaagaagctcttccatgaagcaactgctctttcacggctattccaaggaatccatgaagttaaggaggagctggagggcatgcaatcctttctccgaggtgccgagcggttcaaggacacggatgaaaccactgccaacttcatcaagaagatccgtgacctcgctttcgagatcgaggatattgtcgatgagttcacttacatgctggaggatagatcacatggagcgttggcctccaagatcgtaaagagcatcaaacatatcaaggcatggcgtcatctcgcatccaagctggaatacatcaagctcaagatagagagtgctgataggagaaaggtgaggtacgacatgagaggaatttcaagtgtagctggcaacattgacgattgctcgacatcttcaggtaattttgcaagggaagaagatcttgtggggattggaaaggatggggagttgttgacacaatggttgaaaaacaatttggaacagcaaagaagcataattactacagtttggggaatgggtggagtgggcaagacaacattggttgcttatgtttactatgctgtgaagacagagtttgatgcaacaggatgggtaactgtctctaaaagttaccaaattgaagacttactgaagcagatcatcagaggattcatcaacaatgatccacagggggacttgtataaccacatcgatttttctactatgagaatcacaactttaattgagcacatccgtaattatctgcatggtaaaaggtatgtcctaattcttgatgatgtttgggctgtggatgtttggtttaagataagagctgcatttccttcagatagcaccggtcgatttgtcattacatctaggatacatgaagtagcactgcttgcaacagggaagcgtataattcagttggaaccacttggaccacaacattcatgggaattattctgcaaggaagcattctggaggaatgaagaaaaagtatgcccaccagaacttgagattgtggctcaaaaacttttggacaggtgtagtggcctgcccattgcaattgcatgtttaggtcgcctgctgtcgttcaaagaaccaagctatgatgtttgggagaatctttacaaggatgtgcaatcacagctgactaataatgtgatccttgacatcaatgttgttctcaaagttagcttggaggagcttccacatgatctaaagaactgttttctacactgcaccgtgtttccagaggactacttgatgtcaaggaagaggctagtgaggcattggctgacagcaggattcatcagagaaacaagcaacaaaaccatggaggatgttgcaaacgacaatctgaataaactcgtaaaccgaagcctattgcaagtagtagagaggaatcgaaatggagaagtgcatacctgtcgaatgcatgatattatccgcattcttgctctggcaaaatcagaagaggaatgtttttgtaaagtttacgatggttccagtgcttttctagcagagggtacacaacgtttatcgatccagagttcaaatgtcaatcagttgtctcgatcaggtgcacctcatctgcgccacctctacatctttgggagtggtctgagtattgattcactgacaacctttctgaaatctctcagattgttgtcatctttagatttggaagggattaatatcaagagcctgccatgtgttgtgttcaacctgtacaatctaagattcttaggtcttaaagatactaacattgaagttatcccacgactgattggaagacttcgacacttggaagtcctagatgctcgcaatactaaactgatgaccttgcctaaggacattgtgcaacttcaaaaattgcgatatctaaatatagatacgattccagaggaagcagataggaaggttgtgttttttggtggaatcagggtgcctactggaatagaacagttgacaaggttgcaaacgctgcaattggttgaagcaagcaccgaaactctatgccatattggatctttgacgcagttgagggctttcgctgtcaacaaagttagaaacgaacattgtgtccacttgtgcaatgctatcatgaaaatgagtcatcttgttcaactaaaaatcaagggaatagatgagaaggaaatcttgcagctggaagaacttcatatacctcccactctttcaacactctcattaggaggacagctaagtggaaaatcattgcctcatcttattttgtcacataagagtagcagtaacatcactaggttaagcctcgccttctccaaactcagtgaggactcatttagctgtctactgaacttggatagtttgtacgtacttcatcttttgaaagcctgggaaggaaatcggctatacttccatgcaacatcgtttccgaaactcaagcgcttattgatatgggatgcaccctatctgaatgaaattgagatagaacaaggtgcgatgccaagactggttaagctagttctgagagacctcccaaaattgaagacgcttcctcatggcattgagcatcttagagtactcgaggagttagagctccgagatacttcagaggaacttatagagaagcttcagcagaaaggacaacacatggcatgcgaagctcataagagtatcgaccatatcaagagtatcagcattcatggcacccgatag
More
|
||||||||||
| Protein seq | MAEGVVALLILKLGFALGRETSIMGAKKLFHEATALSRLFQGIHEVKEELEGMQSFLRGAERFKDTDETTANFIKKIRDLAFEIEDIVDEFTYMLEDRSHGALASKIVKSIKHIKAWRHLASKLEYIKLKIESADRRKVRYDMRGISSVAGNIDDCSTSSGNFAREEDLVGIGKDGELLTQWLKNNLEQQRSIITTVWGMGGVGKTTLVAYVYYAVKTEFDATGWVTVSKSYQIEDLLKQIIRGFINNDPQGDLYNHIDFSTMRITTLIEHIRNYLHGKRYVLILDDVWAVDVWFKIRAAFPSDSTGRFVITSRIHEVALLATGKRIIQLEPLGPQHSWELFCKEAFWRNEEKVCPPELEIVAQKLLDRCSGLPIAIACLGRLLSFKEPSYDVWENLYKDVQSQLTNNVILDINVVLKVSLEELPHDLKNCFLHCTVFPEDYLMSRKRLVRHWLTAGFIRETSNKTMEDVANDNLNKLVNRSLLQVVERNRNGEVHTCRMHDIIRILALAKSEEECFCKVYDGSSAFLAEGTQRLSIQSSNVNQLSRSGAPHLRHLYIFGSGLSIDSLTTFLKSLRLLSSLDLEGINIKSLPCVVFNLYNLRFLGLKDTNIEVIPRLIGRLRHLEVLDARNTKLMTLPKDIVQLQKLRYLNIDTIPEEADRKVVFFGGIRVPTGIEQLTRLQTLQLVEASTETLCHIGSLTQLRAFAVNKVRNEHCVHLCNAIMKMSHLVQLKIKGIDEKEILQLEELHIPPTLSTLSLGGQLSGKSLPHLILSHKSSSNITRLSLAFSKLSEDSFSCLLNLDSLYVLHLLKAWEGNRLYFHATSFPKLKRLLIWDAPYLNEIEIEQGAMPRLVKLVLRDLPKLKTLPHGIEHLRVLEELELRDTSEELIEKLQQKGQHMACEAHKSIDHIKSISIHGTR |
||||||||||
| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0003720 | OsNaBo_10g0003720.01 | Chr10 | 4686108 | 4689080 | + | NAM | ||
| CDS seq | atggcagagggtgttgttgccttgctgatactgaagctcggttttgccttggggagagaaacttcaatcatgggtgcaaagaagctcttccatgaagcaactgctctttcacggctattccaaggaatccatgaagttaaggaggagctggagggcatgcaatcctttctccgaggtgccgagcggttcaaggacacggatgaaaccactgccaacttcatcaagaagatccgtgacctcgctttcgagatcgaggatattgtcgatgagttcacttacatgctggaggatagatcacatggagcgttggcctccaagatcgtaaagagcatcaaacatatcaaggcatggcgtcatctcgcatccaagctggaatacatcaagctcaagatagagagtgctgataggagaaaggtgaggtacgacatgagaggaatttcaagtgtagctggcaacattgacgattgctcgacatcttcaggtaattttgcaagggaagaagatcttgtggggattggaaaggatggggagttgttgacacaatggttgaaaaacaatttggaacagcaaagaagcataattactacagtttggggaatgggtggagtgggcaagacaacattggttgcttatgtttactatgctgtgaagacagagtttgatgcaacaggatgggtaactgtctctaaaagttaccaaattgaagacttactgaagcagatcatcagaggattcatcaacaatgatccacagggggacttgtataaccacatcgatttttctactatgagaatcacaactttaattgagcacatccgtaattatctgcatggtaaaaggtatgtcctaattcttgatgatgtttgggctgtggatgtttggtttaagataagagctgcatttccttcagatagcaccggtcgatttgtcattacatctaggatacatgaagtagcactgcttgcaacagggaagcgtataattcagttggaaccacttggaccacaacattcatgggaattattctgcaaggaagcattctggaggaatgaagaaaaagtatgcccaccagaacttgagattgtggctcaaaaacttttggacaggtgtagtggcctgcccattgcaattgcatgtttaggtcgcctgctgtcgttcaaagaaccaagctatgatgtttgggagaatctttacaaggatgtgcaatcacagctgactaataatgtgatccttgacatcaatgttgttctcaaagttagcttggaggagcttccacatgatctaaagaactgttttctacactgcaccgtgtttccagaggactacttgatgtcaaggaagaggctagtgaggcattggctgacagcaggattcatcagagaaacaagcaacaaaaccatggaggatgttgcaaacgacaatctgaataaactcgtaaaccgaagcctattgcaagtagtagagaggaatcgaaatggagaagtgcatacctgtcgaatgcatgatattatccgcattcttgctctggcaaaatcagaagaggaatgtttttgtaaagtttacgatggttccagtgcttttctagcagagggtacacaacgtttatcgatccagagttcaaatgtcaatcagttgtctcgatcaggtgcacctcatctgcgccacctctacatctttgggagtggtctgagtattgattcactgacaacctttctgaaatctctcagattgttgtcatctttagatttggaagggattaatatcaagagcctgccatgtgttgtgttcaacctgtacaatctaagattcttaggtcttaaagatactaacattgaagttatcccacgactgattggaagacttcgacacttggaagtcctagatgctcgcaatactaaactgatgaccttgcctaaggacattgtgcaacttcaaaaattgcgatatctaaatatagatacgattccagaggaagcagataggaaggttgtgttttttggtggaatcagggtgcctactggaatagaacagttgacaaggttgcaaacgctgcaattggttgaagcaagcaccgaaactctatgccatattggatctttgacgcagttgagggctttcgctgtcaacaaagttagaaacgaacattgtgtccacttgtgcaatgctatcatgaaaatgagtcatcttgttcaactaaaaatcaagggaatagatgagaaggaaatcttgcagctggaagaacttcatatacctcccactctttcaacactctcattaggaggacagctaagtggaaaatcattgcctcatcttattttgtcacataagagtagcagtaacatcactaggttaagcctcgccttctccaaactcagtgaggactcatttagctgtctactgaacttggatagtttgtacgtacttcatcttttgaaagcctgggaaggaaatcggctatacttccatgcaacatcgtttccgaaactcaagcgcttattgatatgggatgcaccctatctgaatgaaattgagatagaacaaggtgcgatgccaagactggttaagctagttctgagagacctcccaaaattgaagacgcttcctcatggcattgagcatcttagagtactcgaggagttagagctccgagatacttcagaggaacttatagagaagcttcagcagaaaggacaacacatggcatgcgaagctcataagagtatcgaccatatcaagagtatcagcattcatggcacccgatag
More
|
|||||||
| Protein seq | MAEGVVALLILKLGFALGRETSIMGAKKLFHEATALSRLFQGIHEVKEELEGMQSFLRGAERFKDTDETTANFIKKIRDLAFEIEDIVDEFTYMLEDRSHGALASKIVKSIKHIKAWRHLASKLEYIKLKIESADRRKVRYDMRGISSVAGNIDDCSTSSGNFAREEDLVGIGKDGELLTQWLKNNLEQQRSIITTVWGMGGVGKTTLVAYVYYAVKTEFDATGWVTVSKSYQIEDLLKQIIRGFINNDPQGDLYNHIDFSTMRITTLIEHIRNYLHGKRYVLILDDVWAVDVWFKIRAAFPSDSTGRFVITSRIHEVALLATGKRIIQLEPLGPQHSWELFCKEAFWRNEEKVCPPELEIVAQKLLDRCSGLPIAIACLGRLLSFKEPSYDVWENLYKDVQSQLTNNVILDINVVLKVSLEELPHDLKNCFLHCTVFPEDYLMSRKRLVRHWLTAGFIRETSNKTMEDVANDNLNKLVNRSLLQVVERNRNGEVHTCRMHDIIRILALAKSEEECFCKVYDGSSAFLAEGTQRLSIQSSNVNQLSRSGAPHLRHLYIFGSGLSIDSLTTFLKSLRLLSSLDLEGINIKSLPCVVFNLYNLRFLGLKDTNIEVIPRLIGRLRHLEVLDARNTKLMTLPKDIVQLQKLRYLNIDTIPEEADRKVVFFGGIRVPTGIEQLTRLQTLQLVEASTETLCHIGSLTQLRAFAVNKVRNEHCVHLCNAIMKMSHLVQLKIKGIDEKEILQLEELHIPPTLSTLSLGGQLSGKSLPHLILSHKSSSNITRLSLAFSKLSEDSFSCLLNLDSLYVLHLLKAWEGNRLYFHATSFPKLKRLLIWDAPYLNEIEIEQGAMPRLVKLVLRDLPKLKTLPHGIEHLRVLEELELRDTSEELIEKLQQKGQHMACEAHKSIDHIKSISIHGTR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.159855 | 1.329652 | 0.263141 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0162832 | SBH | 0.594956 | 0.241287 | 1.192639 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07534 | SBH | 0.406626 | 0.191144 | 0.256913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0162832 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003440 | SBH | 0.357426 | 0.875001 | 2.016435 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003400 | SBH | 0.0 | 0.0 | 0.609160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003320 | SBH | 0.000000 | 1.484342 | 1.766474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003630 | SBH | 0.047228 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003500 | RBH | 0.176056 | 0.0 | 0.375303 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0071200 | RBH | 0.050699 | 1.5262255 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003630 | RBH | 0.0 | 0.269757 | 0.082910 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0077800 | RBH | 0.6246875 | 1.1736555 | 0.108117 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003470 | RBH | 0.0 | 0.203071 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003640 | RBH | 0.0 | 5.265748 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003400 | RBH | 0.051170 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003710 | RBH | 0.078848 | 3.254327 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003590 | RBH | 0.000000 | 0.0 | 0.059677 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003580 | RBH | 0.469799 | 4.032347 | 2.628219 |
