Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0003580 | OGI:10013780 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:4480350-4483290 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcagagggtgttgttggaattataattctgaagcttggtttagccttggcaacagacacaagtagggttggtagaaactggctctgccatgaggcttctgctcttgctagaatctttagtcagatccgtgatatgaaggaggagttggagagcatgcaatccttcctacaaggagccgagaggttcaaggatactgacaataccacggccaacttcatcaagaagatccgttgcattgctttcgagattgaggatgttgttgacgagttcacctccaagatggaggtgaaacaaggtgggttggcttcaaagataaagcagaggatttgtcacattaaaacttggcaccgtctagcattcaaatttcaagatatcaaactaaagctggagaatgttgataggagaaaggtccgatatgatatgacaggattggtgaaaaatgcagaacaaagtgatgctaattgcagatatactgatcatacatcatactttccaactgaggaagatcttgttggtattgatgataataaaaagcttttgatgaattggctgaggtgtgattcgcaactgcagagtgtaattaccacagtgtgtgggatgggaggagtaggcaaaaccacattggttgcccatgtttacaacaatgtgaaggtagactttgacagtgcagcttggataactgtttcaaaagcgtatcaggttgaggaattgttaaggcagattatcaagggattcaatagtaatgatctaaagagtgaactccgtgttgacattgttgacatggaaaagaggaccctggttgagatcattcgcgattatttaaaacggaaaaggttcctgctggttctggatgatgtctggggtgttgatatgtggttcaagattagagaggcttttcctgccaatagcattggtcgatttgttatcacctcaagagtccatgacatagcattaatagcaactggaaatcataaaattgagttgaaacccctagaagcgcaccattcttgggagttattttgtaaagaagcattttggaacgaggacagaatatgcccattggatctacagaatttggcgcaaagatttgtggataaatgcaatggtttacctattgctattgcatgtataggtcgtttgctgtcatgcaaaagcccatgttactctgaatgggaaaatttatacaaagaactagagttacagctgagcaataatgcgattcttgatgttaatattgttctaaagctcagtttggacgaccttccatatattttgaaaaactgctttttacactgcacaatatttccggaggactatttgattaagagaaaaaggctgattagacattgggtcacagcgggattcatcgcagttactgaacacaagacaatggaggatgtggctgagggttatttgtatgaacttgtaaaccgaagcttattgcaggtagtggagaggaatgaaagtggacgagtgcggagttgtcgaatgcatgatatcattcgtattcttgctctgaccaaatcaaatgaggaaagcttctgtagtgtttatgatggctccagaactacttcaaaacaaaatacacgtcgtctatcaatccaaagttctgatatagagaagttcactgtttctagtgaggtccatctccgtgcaatctatgctttcaatgagttggtgactagtgattcactgaagtttttcttgaaatctttcaacttgctatcaactctggatctgcaaggtacccaaatcaggaagctaccgaaagagctttttaagttgttcaatctgcattttctgtgtcttagagacactttcgttgaagatatccctgaaacagttggaagattacaaaaattagaagtcttggatgctttcaatgcgaggctagtcagtttgccacagagtatagcaaatcttcataagttgagatatctttacgtagctactgatccaaggaaaggtactaaaggagttgttccctggattggaattcaggtgcctaatggcataaggaacttgaaaagcttgcaagcattacaacttgttgaggctaactcagagactttgtgtcatcttggtgctctgacagagttaagaacttttgccatcacccaggtgaggagagaacaatgttctgatttgtgcaatgctatcatgaacatgaaccatcttgctagtctttctattatggctataaatgagacggaaacactcgaattggatggactctgtttacccccatctctttcaaagcttgaattaggagggaagctggacaaggaatcgatgcctcggattgtctcatccttttcagatcttggtaacctcaccttattgaccttagccttgtctaaacttgatgagaactcattttcttgtctcttgctgttaaatggtctacggggaatttggcttgataaggcttatgaagggaagaaactgcatttcaatgccatgtcacttccatcgctccgactgctagcaatatcagatgctccggagctcaatgatgttgtaatagaacaaagtgcattgcaaaaccttattcgattaacactcattgattgtccagagctgaagaccctccctgatggcattgaacatctcataactctagaggaattatatatgcgaggagcttcgaaagagctcacgaagaagcttaagcgaaaagaagactcaaattattccaacacatatcttatgaagatcaatcacatcagaagggttactgtttttccatgaaacatttgagaaacactctagtatcttcagcttatgtgtctatggagaggtaaatttttcacctgtagtatctaggacaaattaaagtttatctagtggttgattgtactttattcagagcctaatcaatgacattttaagcttccttttgatctttctagaccagtttcagattatagaaacaata
More
|
||||||||||
| CDS seq | atggcagagggtgttgttggaattataattctgaagcttggtttagccttggcaacagacacaagtagggttggtagaaactggctctgccatgaggcttctgctcttgctagaatctttagtcagatccgtgatatgaaggaggagttggagagcatgcaatccttcctacaaggagccgagaggttcaaggatactgacaataccacggccaacttcatcaagaagatccgttgcattgctttcgagattgaggatgttgttgacgagttcacctccaagatggaggtgaaacaaggtgggttggcttcaaagataaagcagaggatttgtcacattaaaacttggcaccgtctagcattcaaatttcaagatatcaaactaaagctggagaatgttgataggagaaaggtccgatatgatatgacaggattggtgaaaaatgcagaacaaagtgatgctaattgcagatatactgatcatacatcatactttccaactgaggaagatcttgttggtattgatgataataaaaagcttttgatgaattggctgaggtgtgattcgcaactgcagagtgtaattaccacagtgtgtgggatgggaggagtaggcaaaaccacattggttgcccatgtttacaacaatgtgaaggtagactttgacagtgcagcttggataactgtttcaaaagcgtatcaggttgaggaattgttaaggcagattatcaagggattcaatagtaatgatctaaagagtgaactccgtgttgacattgttgacatggaaaagaggaccctggttgagatcattcgcgattatttaaaacggaaaaggttcctgctggttctggatgatgtctggggtgttgatatgtggttcaagattagagaggcttttcctgccaatagcattggtcgatttgttatcacctcaagagtccatgacatagcattaatagcaactggaaatcataaaattgagttgaaacccctagaagcgcaccattcttgggagttattttgtaaagaagcattttggaacgaggacagaatatgcccattggatctacagaatttggcgcaaagatttgtggataaatgcaatggtttacctattgctattgcatgtataggtcgtttgctgtcatgcaaaagcccatgttactctgaatgggaaaatttatacaaagaactagagttacagctgagcaataatgcgattcttgatgttaatattgttctaaagctcagtttggacgaccttccatatattttgaaaaactgctttttacactgcacaatatttccggaggactatttgattaagagaaaaaggctgattagacattgggtcacagcgggattcatcgcagttactgaacacaagacaatggaggatgtggctgagggttatttgtatgaacttgtaaaccgaagcttattgcaggtagtggagaggaatgaaagtggacgagtgcggagttgtcgaatgcatgatatcattcgtattcttgctctgaccaaatcaaatgaggaaagcttctgtagtgtttatgatggctccagaactacttcaaaacaaaatacacgtcgtctatcaatccaaagttctgatatagagaagttcactgtttctagtgaggtccatctccgtgcaatctatgctttcaatgagttggtgactagtgattcactgaagtttttcttgaaatctttcaacttgctatcaactctggatctgcaaggtacccaaatcaggaagctaccgaaagagctttttaagttgttcaatctgcattttctgtgtcttagagacactttcgttgaagatatccctgaaacagttggaagattacaaaaattagaagtcttggatgctttcaatgcgaggctagtcagtttgccacagagtatagcaaatcttcataagttgagatatctttacgtagctactgatccaaggaaaggtactaaaggagttgttccctggattggaattcaggtgcctaatggcataaggaacttgaaaagcttgcaagcattacaacttgttgaggctaactcagagactttgtgtcatcttggtgctctgacagagttaagaacttttgccatcacccaggtgaggagagaacaatgttctgatttgtgcaatgctatcatgaacatgaaccatcttgctagtctttctattatggctataaatgagacggaaacactcgaattggatggactctgtttacccccatctctttcaaagcttgaattaggagggaagctggacaaggaatcgatgcctcggattgtctcatccttttcagatcttggtaacctcaccttattgaccttagccttgtctaaacttgatgagaactcattttcttgtctcttgctgttaaatggtctacggggaatttggcttgataaggcttatgaagggaagaaactgcatttcaatgccatgtcacttccatcgctccgactgctagcaatatcagatgctccggagctcaatgatgttgtaatagaacaaagtgcattgcaaaaccttattcgattaacactcattgattgtccagagctgaagaccctccctgatggcattgaacatctcataactctagaggaattatatatgcgaggagcttcgaaagagctcacgaagaagcttaagcgaaaagaagactcaaattattccaacacatatcttatgaagatcaatcacatcagaagggttactgtttttccatga
More
|
||||||||||
| Protein seq | MAEGVVGIIILKLGLALATDTSRVGRNWLCHEASALARIFSQIRDMKEELESMQSFLQGAERFKDTDNTTANFIKKIRCIAFEIEDVVDEFTSKMEVKQGGLASKIKQRICHIKTWHRLAFKFQDIKLKLENVDRRKVRYDMTGLVKNAEQSDANCRYTDHTSYFPTEEDLVGIDDNKKLLMNWLRCDSQLQSVITTVCGMGGVGKTTLVAHVYNNVKVDFDSAAWITVSKAYQVEELLRQIIKGFNSNDLKSELRVDIVDMEKRTLVEIIRDYLKRKRFLLVLDDVWGVDMWFKIREAFPANSIGRFVITSRVHDIALIATGNHKIELKPLEAHHSWELFCKEAFWNEDRICPLDLQNLAQRFVDKCNGLPIAIACIGRLLSCKSPCYSEWENLYKELELQLSNNAILDVNIVLKLSLDDLPYILKNCFLHCTIFPEDYLIKRKRLIRHWVTAGFIAVTEHKTMEDVAEGYLYELVNRSLLQVVERNESGRVRSCRMHDIIRILALTKSNEESFCSVYDGSRTTSKQNTRRLSIQSSDIEKFTVSSEVHLRAIYAFNELVTSDSLKFFLKSFNLLSTLDLQGTQIRKLPKELFKLFNLHFLCLRDTFVEDIPETVGRLQKLEVLDAFNARLVSLPQSIANLHKLRYLYVATDPRKGTKGVVPWIGIQVPNGIRNLKSLQALQLVEANSETLCHLGALTELRTFAITQVRREQCSDLCNAIMNMNHLASLSIMAINETETLELDGLCLPPSLSKLELGGKLDKESMPRIVSSFSDLGNLTLLTLALSKLDENSFSCLLLLNGLRGIWLDKAYEGKKLHFNAMSLPSLRLLAISDAPELNDVVIEQSALQNLIRLTLIDCPELKTLPDGIEHLITLEELYMRGASKELTKKLKRKEDSNYSNTYLMKINHIRRVTVFP |
||||||||||
| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0003580 | OsNaBo_10g0003580.01 | Chr10 | 4480350 | 4483290 | + | NAM | ||
| CDS seq | atggcagagggtgttgttggaattataattctgaagcttggtttagccttggcaacagacacaagtagggttggtagaaactggctctgccatgaggcttctgctcttgctagaatctttagtcagatccgtgatatgaaggaggagttggagagcatgcaatccttcctacaaggagccgagaggttcaaggatactgacaataccacggccaacttcatcaagaagatccgttgcattgctttcgagattgaggatgttgttgacgagttcacctccaagatggaggtgaaacaaggtgggttggcttcaaagataaagcagaggatttgtcacattaaaacttggcaccgtctagcattcaaatttcaagatatcaaactaaagctggagaatgttgataggagaaaggtccgatatgatatgacaggattggtgaaaaatgcagaacaaagtgatgctaattgcagatatactgatcatacatcatactttccaactgaggaagatcttgttggtattgatgataataaaaagcttttgatgaattggctgaggtgtgattcgcaactgcagagtgtaattaccacagtgtgtgggatgggaggagtaggcaaaaccacattggttgcccatgtttacaacaatgtgaaggtagactttgacagtgcagcttggataactgtttcaaaagcgtatcaggttgaggaattgttaaggcagattatcaagggattcaatagtaatgatctaaagagtgaactccgtgttgacattgttgacatggaaaagaggaccctggttgagatcattcgcgattatttaaaacggaaaaggttcctgctggttctggatgatgtctggggtgttgatatgtggttcaagattagagaggcttttcctgccaatagcattggtcgatttgttatcacctcaagagtccatgacatagcattaatagcaactggaaatcataaaattgagttgaaacccctagaagcgcaccattcttgggagttattttgtaaagaagcattttggaacgaggacagaatatgcccattggatctacagaatttggcgcaaagatttgtggataaatgcaatggtttacctattgctattgcatgtataggtcgtttgctgtcatgcaaaagcccatgttactctgaatgggaaaatttatacaaagaactagagttacagctgagcaataatgcgattcttgatgttaatattgttctaaagctcagtttggacgaccttccatatattttgaaaaactgctttttacactgcacaatatttccggaggactatttgattaagagaaaaaggctgattagacattgggtcacagcgggattcatcgcagttactgaacacaagacaatggaggatgtggctgagggttatttgtatgaacttgtaaaccgaagcttattgcaggtagtggagaggaatgaaagtggacgagtgcggagttgtcgaatgcatgatatcattcgtattcttgctctgaccaaatcaaatgaggaaagcttctgtagtgtttatgatggctccagaactacttcaaaacaaaatacacgtcgtctatcaatccaaagttctgatatagagaagttcactgtttctagtgaggtccatctccgtgcaatctatgctttcaatgagttggtgactagtgattcactgaagtttttcttgaaatctttcaacttgctatcaactctggatctgcaaggtacccaaatcaggaagctaccgaaagagctttttaagttgttcaatctgcattttctgtgtcttagagacactttcgttgaagatatccctgaaacagttggaagattacaaaaattagaagtcttggatgctttcaatgcgaggctagtcagtttgccacagagtatagcaaatcttcataagttgagatatctttacgtagctactgatccaaggaaaggtactaaaggagttgttccctggattggaattcaggtgcctaatggcataaggaacttgaaaagcttgcaagcattacaacttgttgaggctaactcagagactttgtgtcatcttggtgctctgacagagttaagaacttttgccatcacccaggtgaggagagaacaatgttctgatttgtgcaatgctatcatgaacatgaaccatcttgctagtctttctattatggctataaatgagacggaaacactcgaattggatggactctgtttacccccatctctttcaaagcttgaattaggagggaagctggacaaggaatcgatgcctcggattgtctcatccttttcagatcttggtaacctcaccttattgaccttagccttgtctaaacttgatgagaactcattttcttgtctcttgctgttaaatggtctacggggaatttggcttgataaggcttatgaagggaagaaactgcatttcaatgccatgtcacttccatcgctccgactgctagcaatatcagatgctccggagctcaatgatgttgtaatagaacaaagtgcattgcaaaaccttattcgattaacactcattgattgtccagagctgaagaccctccctgatggcattgaacatctcataactctagaggaattatatatgcgaggagcttcgaaagagctcacgaagaagcttaagcgaaaagaagactcaaattattccaacacatatcttatgaagatcaatcacatcagaagggttactgtttttccatga
More
|
|||||||
| Protein seq | MAEGVVGIIILKLGLALATDTSRVGRNWLCHEASALARIFSQIRDMKEELESMQSFLQGAERFKDTDNTTANFIKKIRCIAFEIEDVVDEFTSKMEVKQGGLASKIKQRICHIKTWHRLAFKFQDIKLKLENVDRRKVRYDMTGLVKNAEQSDANCRYTDHTSYFPTEEDLVGIDDNKKLLMNWLRCDSQLQSVITTVCGMGGVGKTTLVAHVYNNVKVDFDSAAWITVSKAYQVEELLRQIIKGFNSNDLKSELRVDIVDMEKRTLVEIIRDYLKRKRFLLVLDDVWGVDMWFKIREAFPANSIGRFVITSRVHDIALIATGNHKIELKPLEAHHSWELFCKEAFWNEDRICPLDLQNLAQRFVDKCNGLPIAIACIGRLLSCKSPCYSEWENLYKELELQLSNNAILDVNIVLKLSLDDLPYILKNCFLHCTIFPEDYLIKRKRLIRHWVTAGFIAVTEHKTMEDVAEGYLYELVNRSLLQVVERNESGRVRSCRMHDIIRILALTKSNEESFCSVYDGSRTTSKQNTRRLSIQSSDIEKFTVSSEVHLRAIYAFNELVTSDSLKFFLKSFNLLSTLDLQGTQIRKLPKELFKLFNLHFLCLRDTFVEDIPETVGRLQKLEVLDAFNARLVSLPQSIANLHKLRYLYVATDPRKGTKGVVPWIGIQVPNGIRNLKSLQALQLVEANSETLCHLGALTELRTFAITQVRREQCSDLCNAIMNMNHLASLSIMAINETETLELDGLCLPPSLSKLELGGKLDKESMPRIVSSFSDLGNLTLLTLALSKLDENSFSCLLLLNGLRGIWLDKAYEGKKLHFNAMSLPSLRLLAISDAPELNDVVIEQSALQNLIRLTLIDCPELKTLPDGIEHLITLEELYMRGASKELTKKLKRKEDSNYSNTYLMKINHIRRVTVFP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.469799 | 4.032347 | 2.628219 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0162832 | RBH | 0.594956 | 0.241287 | 1.192639 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07534 | RBH | 0.406626 | 0.191144 | 0.256913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0162832 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003440 | RBH | 0.357426 | 0.875001 | 2.016435 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003400 | RBH | 0.0 | 0.0 | 0.609160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003320 | RBH | 0.000000 | 1.484342 | 1.766474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003630 | RBH | 0.047228 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003350 | RBH | 2.828706 | 3.522375 | 5.142111 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0066900 | RBH | 0.8664265 | 3.080752 | 1.470837 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003550 | RBH | 0.065689 | 0.0 | 0.322064 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0074200 | RBH | 1.3619185 | 4.530668 | 4.8511655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003380 | RBH | 0.073880 | 0.040873 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003420 | RBH | 0.473315 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003540 | RBH | 0.735706 | 1.971969 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003300 | RBH | 0.062674 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003620 | RBH | 0.100362 | 2.340306 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003450 | RBH | 0.317483 | 0.599362 | 0.358878 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0003720 | RBH | 0.159855 | 1.329652 | 0.263141 |
