Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0001510 | OGI:10007330 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:2525252-2527768 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagcttgacgatattttttgcagtagctctagcaataccaatgcttctgttgatccacggttggctactctcttcgcggaagagaaccatcttgtcggtatagatggcccaagggatgaacttgtcaattggttggatgcagagagcaggttgataaagtgtcgcaaggtattatctattgtggggtttggaggtcttgggaagacaactctagcgaatgaggtatatcgcagggttagagttcattttgactgccatgcatttgtgtcagtgtcacaaaagcccgatttcaagaatatcttcaaggatataatatacaatatgcctacgaaagatggtttcctcaaagatattgacacatggaatgaaaagaaattttttgaaaagctaagagaactacttgtggataagaggtaattctctagttcTtttttcccctcttcgataaagttgtatacccacactcatgatataatagagtggtttttcattcacaaacttatattgttgataaactttaactaggtatcttgttataattgatgatgtatggtctatttcggcatggaaagctatcacggttgcattcccggagaatgactgttccagtacaattatagttactacacgcgtttccgatgttggatggtcatgctgcttaaatggcattgaccgcaattatcagatggaacctctaagtgaagttcactctagaagactattttgcaagagaattttcagtacaaatgaggatggctgcccagatattttacaggaagtttcaacagatatattgaagaaatgtggcggtcttccattagcaattattagcatatctggcttattagcaaatagaccagttatcaaggaagagtgggagaaagtgaaagaatcgattggttttgcattggacaagaaccaaaatctagaaggaatgaaaatcatactgtcccttagctttaatgaccttccaaactatctcaagacttgtttgctatatttgagcatatttccagaggattgtattattgaaagaaacatggtagtatggcgattgatagctgaagactttatctctaaagactgtgggcagaaattggaagatgttgcagagagctacttttatgagcttatcaacaaaagcctggttcaacctgtggacattggttttgatggtaaggctcgtgcatgccgtgtccatgatataatgcttgaatttatctcctcaaaagcaacagaagagaattttgttacattattaggtggccaaactagaaaaacgaattcgcatcattatgttcggtgattatccattcaggacactaataatcatttgtcaactctgttagcaaacaaaaatttatgccatgttcgaaccctacactgctttggtgggaacataatttttttgccccagctttcccggtttgagattctacgagtactggattttcatggctgtcgaggtttagagcagtatttggaaaatatagacaagctattccagcttgagtacttaagcctttgttgttcagacatatcacgtataccaacacaaattgcaaagctccaaaatttggtgacgctggaccttcgccaaacatgcgtagaagagtttcccactgaattttgccgattgataaagctacaacatcttctcggagatcggatgttgaagctaccggatggaattgggaatatgaggaatctacaggtgctatcaggcattaatataagcagtagctcagcgagcgcagtggcagaacttggtgagctgaccagtttgagggacctcaaaatatgtttgtttgatgaactcagtaagtgcaagacaaaagaagagatgttactcgcctcactttgcaaactaagcagctacaaactccaatcattgcacattatagatgacagtgacgatgattacttagaacgttggttccctatcccttgtttccttcgattgtttcacatgatcactaactactatttcccgcaacttccaaagtgggttaaaccgtctctcaccaaaatggcataccttaacgtaaatttacgtgagataaaggaggaagatatgaaaacacttggagacctgccagccttactcagtctagaaatatggctgaaacctgacccaaaagcacacgattcctgtttcttaaggagtttgtccttgtttgtagtgatcacaatggtggagcataccttacgtttgagaaaggggctatgccaaagctggagaagcttgagattccatttcacgttttaatggcagaaccccacgatttctattttggcatcaacaacctccaacatctcaaagaagtggaggtaagaatctaccgtgtgggcgctgaagattctgatgctgaggctgcggtggctgccatcaggagcgaagcaaatgcaaatcccaaccatcctagacttgccatcaaggaagcatacgtcagtaacaaagagtgtgatgataacaaggatgcagaggatcagcaaggcggtgttactgacaactaa
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| CDS seq | atgcctacgaaagatggtttcctcaaagatattgacacatggaatgaaaagaaattttttgaaaagctaagagaactacttgtggataagaggtatcttgttataattgatgatgtatggtctatttcggcatggaaagctatcacggttgcattcccggagaatgactgttccagtacaattatagttactacacgcgtttccgatgttggatggtcatgctgcttaaatggcattgaccgcaattatcagatggaacctctaagtgaagttcactctagaagactattttgcaagagaattttcagtacaaatgaggatggctgcccagatattttacaggaagtttcaacagatatattgaagaaatgtggcggtcttccattagcaattattagcatatctggcttattagcaaatagaccagttatcaaggaagagtgggagaaagtgaaagaatcgattggttttgcattggacaagaaccaaaatctagaaggaatgaaaatcatactgtcccttagctttaatgaccttccaaactatctcaagacttgtttgctatatttgagcatatttccagaggattgtattattgaaagaaacatggtagtatggcgattgatagctgaagactttatctctaaagactgtgggcagaaattggaagatgttgcagagagctacttttatgagcttatcaacaaaagcctggttcaacctgtggacattggttttgatggtaaggctcgtgcatgccgtgtccatgatataatgcttgaatttatctcctcaaaagcaacagaagagaattttctttcccggtttgagattctacgagtactggattttcatggctgtcgaggtttagagcagtatttggaaaatatagacaagctattccagcttgagtacttaagcctttgttgttcagacatatcacgtataccaacacaaattgcaaagctccaaaatttggtgacgctggaccttcgccaaacatgcgtagaagagtttcccactgaattttgccgattgataaagctacaacatcttctcggagatcggatgttgaagctaccggatggaattgggaatatgaggaatctacaggtgctatcaggcattaatataagcagtagctcagcgagcgcagtggcagaacttggtgagctgaccagtttgagggacctcaaaatatgtttgtttgatgaactcagtaagtgcaagacaaaagaagagatgttactcgcctcactttgcaaactaagcagctacaaactccaatcattgcacattatagatgacagtgacgatgattacttagaacgttggttccctatcccttgtttccttcgattgtttcacatgatcactaactactatttcccgcaacttccaaagtgggttaaaccgtctctcaccaaaatggcataccttaacgtaaatttacgtgagataaaggaggaagatatgaaaacacttggagacctgccagccttactcagtctagaaatatggctgaaacctgacccaaaagcacacgattcctgtttcttaaggagtttgtcctttgatcacaatggtggagcataccttacgtttgagaaaggggctatgccaaagctggagaagcttgagattccatttcacgttttaatggcagaaccccacgatttctattttggcatcaacaacctccaacatctcaaagaagtggaggtaagaatctaccgtgtgggcgctgaagattctgatgctgaggctgcggtggctgccatcaggagcgaagcaaatgcaaatcccaaccatcctagacttgccatcaaggaagcatacgtcagtaacaaagagtgtgatgataacaaggatgcagaggatcagcaaggcggtgttactgacaactaa
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| Protein seq | MPTKDGFLKDIDTWNEKKFFEKLRELLVDKRYLVIIDDVWSISAWKAITVAFPENDCSSTIIVTTRVSDVGWSCCLNGIDRNYQMEPLSEVHSRRLFCKRIFSTNEDGCPDILQEVSTDILKKCGGLPLAIISISGLLANRPVIKEEWEKVKESIGFALDKNQNLEGMKIILSLSFNDLPNYLKTCLLYLSIFPEDCIIERNMVVWRLIAEDFISKDCGQKLEDVAESYFYELINKSLVQPVDIGFDGKARACRVHDIMLEFISSKATEENFLSRFEILRVLDFHGCRGLEQYLENIDKLFQLEYLSLCCSDISRIPTQIAKLQNLVTLDLRQTCVEEFPTEFCRLIKLQHLLGDRMLKLPDGIGNMRNLQVLSGINISSSSASAVAELGELTSLRDLKICLFDELSKCKTKEEMLLASLCKLSSYKLQSLHIIDDSDDDYLERWFPIPCFLRLFHMITNYYFPQLPKWVKPSLTKMAYLNVNLREIKEEDMKTLGDLPALLSLEIWLKPDPKAHDSCFLRSLSFDHNGGAYLTFEKGAMPKLEKLEIPFHVLMAEPHDFYFGINNLQHLKEVEVRIYRVGAEDSDAEAAVAAIRSEANANPNHPRLAIKEAYVSNKECDDNKDAEDQQGGVTDN |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0001510 | OsNaBo_10g0001510.01 | Chr10 | 2525252 | 2527768 | + | NAM | ||
| CDS seq | atgcctacgaaagatggtttcctcaaagatattgacacatggaatgaaaagaaattttttgaaaagctaagagaactacttgtggataagaggtatcttgttataattgatgatgtatggtctatttcggcatggaaagctatcacggttgcattcccggagaatgactgttccagtacaattatagttactacacgcgtttccgatgttggatggtcatgctgcttaaatggcattgaccgcaattatcagatggaacctctaagtgaagttcactctagaagactattttgcaagagaattttcagtacaaatgaggatggctgcccagatattttacaggaagtttcaacagatatattgaagaaatgtggcggtcttccattagcaattattagcatatctggcttattagcaaatagaccagttatcaaggaagagtgggagaaagtgaaagaatcgattggttttgcattggacaagaaccaaaatctagaaggaatgaaaatcatactgtcccttagctttaatgaccttccaaactatctcaagacttgtttgctatatttgagcatatttccagaggattgtattattgaaagaaacatggtagtatggcgattgatagctgaagactttatctctaaagactgtgggcagaaattggaagatgttgcagagagctacttttatgagcttatcaacaaaagcctggttcaacctgtggacattggttttgatggtaaggctcgtgcatgccgtgtccatgatataatgcttgaatttatctcctcaaaagcaacagaagagaattttctttcccggtttgagattctacgagtactggattttcatggctgtcgaggtttagagcagtatttggaaaatatagacaagctattccagcttgagtacttaagcctttgttgttcagacatatcacgtataccaacacaaattgcaaagctccaaaatttggtgacgctggaccttcgccaaacatgcgtagaagagtttcccactgaattttgccgattgataaagctacaacatcttctcggagatcggatgttgaagctaccggatggaattgggaatatgaggaatctacaggtgctatcaggcattaatataagcagtagctcagcgagcgcagtggcagaacttggtgagctgaccagtttgagggacctcaaaatatgtttgtttgatgaactcagtaagtgcaagacaaaagaagagatgttactcgcctcactttgcaaactaagcagctacaaactccaatcattgcacattatagatgacagtgacgatgattacttagaacgttggttccctatcccttgtttccttcgattgtttcacatgatcactaactactatttcccgcaacttccaaagtgggttaaaccgtctctcaccaaaatggcataccttaacgtaaatttacgtgagataaaggaggaagatatgaaaacacttggagacctgccagccttactcagtctagaaatatggctgaaacctgacccaaaagcacacgattcctgtttcttaaggagtttgtcctttgatcacaatggtggagcataccttacgtttgagaaaggggctatgccaaagctggagaagcttgagattccatttcacgttttaatggcagaaccccacgatttctattttggcatcaacaacctccaacatctcaaagaagtggaggtaagaatctaccgtgtgggcgctgaagattctgatgctgaggctgcggtggctgccatcaggagcgaagcaaatgcaaatcccaaccatcctagacttgccatcaaggaagcatacgtcagtaacaaagagtgtgatgataacaaggatgcagaggatcagcaaggcggtgttactgacaactaa
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| Protein seq | MPTKDGFLKDIDTWNEKKFFEKLRELLVDKRYLVIIDDVWSISAWKAITVAFPENDCSSTIIVTTRVSDVGWSCCLNGIDRNYQMEPLSEVHSRRLFCKRIFSTNEDGCPDILQEVSTDILKKCGGLPLAIISISGLLANRPVIKEEWEKVKESIGFALDKNQNLEGMKIILSLSFNDLPNYLKTCLLYLSIFPEDCIIERNMVVWRLIAEDFISKDCGQKLEDVAESYFYELINKSLVQPVDIGFDGKARACRVHDIMLEFISSKATEENFLSRFEILRVLDFHGCRGLEQYLENIDKLFQLEYLSLCCSDISRIPTQIAKLQNLVTLDLRQTCVEEFPTEFCRLIKLQHLLGDRMLKLPDGIGNMRNLQVLSGINISSSSASAVAELGELTSLRDLKICLFDELSKCKTKEEMLLASLCKLSSYKLQSLHIIDDSDDDYLERWFPIPCFLRLFHMITNYYFPQLPKWVKPSLTKMAYLNVNLREIKEEDMKTLGDLPALLSLEIWLKPDPKAHDSCFLRSLSFDHNGGAYLTFEKGAMPKLEKLEIPFHVLMAEPHDFYFGINNLQHLKEVEVRIYRVGAEDSDAEAAVAAIRSEANANPNHPRLAIKEAYVSNKECDDNKDAEDQQGGVTDN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.572620 | 3.276791 | 2.591505 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0133000 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04110 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0133000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001560 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001630 | RBH | 0.608830 | 0.891640 | 4.772571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001560 | SBH | 0.0 | 0.733663 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001470 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001540 | RBH | 6.165460 | 6.406488 | 10.872694 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0036700 | RBH | 5.792574 | 26.232547 | 19.232971 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001710 | RBH | 0.0 | 0.0 | 0.030543 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0038900 | SBH | 0.015219 | 1.538173 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001580 | RBH | 0.146785 | 0.002566 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001580 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001690 | RBH | 0.0 | 8.486369 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0055420 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001450 | RBH | 0.327523 | 3.186733 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001640 | RBH | 0.442532 | 1.469370 | 2.293955 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001420 | RBH | 0.0 | 0.0 | 0.231602 |
