Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0010560 | OGI:09044300 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:15476576-15479699 | ||||||||
| Gene Symbol | OsbHLH100 | ||||||||||
| DNA seq | tcacggcttggagacggaggcggcgtccttgagctgcgacccctcgccgtcggcggcgcccccgccgccgttggccatggccgactgcgccgtgagcaccgacatgctcggcgaggccggcacggagccgtcggcgttcaggccgggcaggtgtccgcgcatggccgccgccgccgccgcagccgcgctcagttggtggtggtgcgcggcggcagcggcggcgccgagcccggccgggaactgctgcgcggcggcggcggcgaccaccggcggccggagatggcacgtcgccgaggagatggcggacgcgagggagatcggcatgaggcagaggcccttCcccCTGCAGGTACTGCATGGCGGTGCCCATGTCCTCCTCCATCAGCTTGGCCACCTGCTGCTCCGTCACCGTCAGGCTATCGCTCCCCGCCGCCGCCGCCGCCGCCGCCGGTGCTCCGCCGTTCGCCGCGCCGCCGCCTCGCCCCTGCACGCGCAACACAGCACCACGACCCCACACGTCAGTACCGAGTCGTCGTCGTCGTCGTCAGAGACGCATGCAGCTGCCATGCCAGCAGCAGCAGTGGCACTAAGGGCAGTAGCGGCATTTCGCCCGGTGGCACGCGAGCCACTGTGCGTGGCAGTAGCCATCAGCCGTGGCACTGAAAAGTTCGTTCACATCCTGGTGATTCTTTCGAGTGCCGGAAAAGCTAGAAAGAGAGAGAAAGCGAGAGGAGGAGGAGGACGACGAGGAGGAGGAGGAGgagagaaagccaccatctgctgctgctgctgctgccatgttggagagaccgagagagcgagctagcggaggacgagggttacctccgaggacatgtcggccacgagcggcgcgacggctgcggcgccacctaaccggctcatgctcaaaacctgttcaccaaaaaaaaaaaaaacacgtcagtatctcgaactaaaaacagattaatactgtactacatgtattagtaatttagtgtacgtgcttgccttgacttggagttgtaggaacttgacgtagtcgatgatctcgtccagcatggaagccttgtccgtctgcatcaactccaagaaagacacacacacacacacacttgagatgagatgagcaattcacgaagaggttaatctcaaatggggaactgaaaagaaagcgagcgtcgtccgtcgcgcgcgacaagggcaggaattctaggaggaagaaagcaaagcaaaagcatccgcccgcgcgcggctgccgagacagcacggcggtggtcaagtacgacgcccatcgtgcgcgcaagcgtgcgggtaaacgaggacgactactcccattcTttttttcttttgaatttctccactgatgttcatggctgcggcggcctcgactgtattttttaaattaagcttttattaatccatcccttcccggcaatccggcattgaaccctaacactaataaaatcagcaaaaccccacaccccgcggtctgattgagatattgctagctggagtagctcgagctcgatcccctttctCctcccacaaagccaaaaccctagccgtttaattcaatctttggttgtgattagcttgctcaccttgttggcgttgggaaccagttcttgcagtgccttcatcctctcggcgatcctctccctccgaagctgcgaaacatcgataactaaaatcaactagataattttttggaacactaataatctagaacaatggaagaggtatgtaggagctagtgaaatctcgcataagaacaacaaGggaggaggaggaggagaatagtaggttggagaagcagacaaaggaataatactggtagttggggagccagccggccggccggaatccgatccaaaccgagcaaaaaaacaagcgcacacgggcgccgattagcggcaactgctcccgtggttttgttctcccgactaattgccggacaaaataTttttatttttaagtttcggtgtagtagtagtagtactgtgctagtgatggtggagctagcttagcttagcttagctagcgtcatcttgcttacccgctcggcgatgctgtgggggtcggtggcctggcctcgccgtgcccgcacccgctgccgcggcggcgccggcgcgcctcctccagccgcgccggcctgaggctgcgccgccccgccgcctgacgcggttcctcctcctcctccgccgccgccgccgccgaagctctgcgtcggaatcgtcggcgccgtctgtaagcaaacacatggtctgtgtttgagcgTtttgaggcgaggcgagccatgtgatatgtcagcgagcgaattaattagaacctgtggatgtggctggaaatgttgctgctgttgatggagcgagccggcgaatccgccgccgtagacgccgccggcgtctcctcctccctggaacgaacaatcgggagcgaatcaaaacgcaggaattttattttgggccaaaagagagaaagattcttgattcttgaaagttgaagaagaaaaggtagcaggtggatgcgagcaaaggggggatggatggatggatggatgaatcagtacggcggaattggccgcggcggccTtgagcaacgcctgcacgtcgccgcccgatccgccgctgccgagggtgagcgggaggagaaggcccccgtcgccgccgccgccgccgccccccgccggcgaccgtccccccaagccctggagcatcatgtggtgcccctgcctcagatcggcgagctgctgcagcaccatctgcttcacggcggccgcgccaccgccgcctcctcctccgccgccgctgatctggtgctgccggagccgcgacgccagcatcgccgactcgtcgtacggcccaccaaactgctgctggtggtggtggtggtggtgatgcatCccctcggcgtcgtcctcggccgccttcccggcggcgaggtcgggccacgccgagggcggcaggctgctgagcatctggtcgaggaagtcgtcgtggacgccgccgccgccgccgccggcattggcggcgaccccgccgccgttgcggaggtcgtccagggagatctggcccgccgccgccgccgcagccatggcTtgcatttcccgcgtcgtcggctgcat
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| CDS seq | atgcagccgacgacgcgggaaatgcaAgccatggctgcggcggcggcggcgggccagatctccctggacgacctccgcaacggcggcggggtcgccgccaatgccggcggcggcggcggcggcgtccacgacgacttcctcgaccagatgctcagcagcctgccgccctcggcgtggcccgacctcgccgccgggaaggcggccgaggacgacgccgagggGatgcatcaccaccaccaccaccaccagcagcagtttggtgggccgtacgacgagtcggcgatgctggcgtcgcggctccggcagcaccagatcagcggcggcggaggaggaggcggcggtggcgcggccgccgtgaagcagatggtgctgcagcagctcgccgatctgaggcaggggcaccacatgatgctccagggcttggggggacggtcgccggcggggggcggcggcggcggcggcgacgggggccttctcctcccgctcaccctcggcagcggcggatcgggcggcgacgtgcaggcgttgctcaAggccgccgcggccaattccgccggaggaggagacgccggcggcgtctacggcggcggattcgccggctcgctccatcaacagcagcaacatttccagccacatccacagacggcgccgacgattccgacgcagagcttcggcggcggcggcggcggaggaggaggaggaaccgcgtcaggcggcggggcggcgcagcctcaggccggcgcggctggaggaggcgcgccggcgccgccgcggcagcgggtgcgggcacggcgaggccaggccaccgacccccacagcatcgccgagcggcttcggagggagaggatcgccgagaggatgaaggcactgcaagaactggttcccaacgccaacaagacggacaaggcttccatgctggacgagatcatcgactacgtcaagttcctacaactccaagtcaaggcaagcacgtacactaaattactaatacatgttttgagcatgagccggttaggtggcgccgcagccgtcgcgccgctcgtggccgacatgtcctcggagGGGCGAGGCGGCGGCGCGGCGAACGGCGGAGCACCGGCGGCGGCGGCGGCGGCGGCGGGGAGCGATAGCCTGACGGTGACGGAGCAGCAGGTGGCCAAGCTGATGGAGGAGGACATGGGCACCGCCATGCAgggGaagggcctctgcctcatgccgatctccctcgcgtccgccatctcctcggcgacgtgccatctccggccgccggtggtcgccgccgccgccgcgcagcagttcccggccgggctcggcgccgccgctgccgccgcgcaccaccaccaactgagcgcggctgcggcggcggcggcggccatgcgcggacacctgcccggcctgaacgccgacggctccgtgccggcctcgccgagcatgtcggtgctcacggcgcagtcggccatggccaacggcggcgggggcgccgccgacggcgaggggtcgcagctcaaggacgccgcctccgtctccaagccgtga
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| Protein seq | MQPTTREMQAMAAAAAAGQISLDDLRNGGGVAANAGGGGGGVHDDFLDQMLSSLPPSAWPDLAAGKAAEDDAEGMHHHHHHHQQQFGGPYDESAMLASRLRQHQISGGGGGGGGGAAAVKQMVLQQLADLRQGHHMMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYGGGFAGSLHQQQQHFQPHPQTAPTIPTQSFGGGGGGGGGGTASGGGAAQPQAGAAGGGAPAPPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGRGGGAANGGAPAAAAAAAGSDSLTVTEQQVAKLMEEDMGTAMQGKGLCLMPISLASAISSATCHLRPPVVAAAAAQQFPAGLGAAAAAAHHHQLSAAAAAAAAMRGHLPGLNADGSVPASPSMSVLTAQSAMANGGGGAADGEGSQLKDAASVSKP |
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| Function | bHLH transcription factor RHL1 [UniProtKB/Swiss-Prot:D0PX88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0010560 | OsNaBo_09g0010560.01 | Chr09 | 15476576 | 15479699 | - | NAM | ||
| CDS seq | atgcagccgacgacgcgggaaatgcaAgccatggctgcggcggcggcggcgggccagatctccctggacgacctccgcaacggcggcggggtcgccgccaatgccggcggcggcggcggcggcgtccacgacgacttcctcgaccagatgctcagcagcctgccgccctcggcgtggcccgacctcgccgccgggaaggcggccgaggacgacgccgagggGatgcatcaccaccaccaccaccaccagcagcagtttggtgggccgtacgacgagtcggcgatgctggcgtcgcggctccggcagcaccagatcagcggcggcggaggaggaggcggcggtggcgcggccgccgtgaagcagatggtgctgcagcagctcgccgatctgaggcaggggcaccacatgatgctccagggcttggggggacggtcgccggcggggggcggcggcggcggcggcgacgggggccttctcctcccgctcaccctcggcagcggcggatcgggcggcgacgtgcaggcgttgctcaAggccgccgcggccaattccgccggaggaggagacgccggcggcgtctacggcggcggattcgccggctcgctccatcaacagcagcaacatttccagccacatccacagacggcgccgacgattccgacgcagagcttcggcggcggcggcggcggaggaggaggaggaaccgcgtcaggcggcggggcggcgcagcctcaggccggcgcggctggaggaggcgcgccggcgccgccgcggcagcgggtgcgggcacggcgaggccaggccaccgacccccacagcatcgccgagcggcttcggagggagaggatcgccgagaggatgaaggcactgcaagaactggttcccaacgccaacaagacggacaaggcttccatgctggacgagatcatcgactacgtcaagttcctacaactccaagtcaaggcaagcacgtacactaaattactaatacatgttttgagcatgagccggttaggtggcgccgcagccgtcgcgccgctcgtggccgacatgtcctcggagGGGCGAGGCGGCGGCGCGGCGAACGGCGGAGCACCGGCGGCGGCGGCGGCGGCGGCGGGGAGCGATAGCCTGACGGTGACGGAGCAGCAGGTGGCCAAGCTGATGGAGGAGGACATGGGCACCGCCATGCAgggGaagggcctctgcctcatgccgatctccctcgcgtccgccatctcctcggcgacgtgccatctccggccgccggtggtcgccgccgccgccgcgcagcagttcccggccgggctcggcgccgccgctgccgccgcgcaccaccaccaactgagcgcggctgcggcggcggcggcggccatgcgcggacacctgcccggcctgaacgccgacggctccgtgccggcctcgccgagcatgtcggtgctcacggcgcagtcggccatggccaacggcggcgggggcgccgccgacggcgaggggtcgcagctcaaggacgccgcctccgtctccaagccgtga
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| Protein seq | MQPTTREMQAMAAAAAAGQISLDDLRNGGGVAANAGGGGGGVHDDFLDQMLSSLPPSAWPDLAAGKAAEDDAEGMHHHHHHHQQQFGGPYDESAMLASRLRQHQISGGGGGGGGGAAAVKQMVLQQLADLRQGHHMMLQGLGGRSPAGGGGGGGDGGLLLPLTLGSGGSGGDVQALLKAAAANSAGGGDAGGVYGGGFAGSLHQQQQHFQPHPQTAPTIPTQSFGGGGGGGGGGTASGGGAAQPQAGAAGGGAPAPPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKASTYTKLLIHVLSMSRLGGAAAVAPLVADMSSEGRGGGAANGGAPAAAAAAAGSDSLTVTEQQVAKLMEEDMGTAMQGKGLCLMPISLASAISSATCHLRPPVVAAAAAQQFPAGLGAAAAAAHHHQLSAAAAAAAAMRGHLPGLNADGSVPASPSMSVLTAQSAMANGGGGAADGEGSQLKDAASVSKP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 2.573606 | 2.182746 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0417400 | RBH | 0.160464 | 0.247407 | 0.535214 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g25040 | RBH | 0.180339 | 0.193874 | 0.041045 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0417400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010410 | RBH | 0.048459 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010370 | RBH | 0.686756 | 1.095522 | 0.776520 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010660 | RBH | 0.0 | 2.251188 | 1.486707 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010420 | RBH | 0.000000 | 0.087117 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010520 | RBH | 0.137649 | 9.457334 | 0.166176 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0251800 | RBH | 2.223254 | 9.2709905 | 6.503301 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010520 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0238100 | RBH | 3.0028065 | 13.3034805 | 11.9672525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010490 | RBH | 0.047809 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010430 | RBH | 5.882650 | 17.442669 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010230 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010290 | RBH | 0.108676 | 5.557720 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010760 | RBH | 0.0 | 0.420237 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0016870 | SBH | 0.0 | 6.196002 | 0.0 |
