Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0016870 | OGI:08061540 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:22374931-22377723 | ||||||||
| Gene Symbol | OsbHLH038 | ||||||||||
| DNA seq | tcaaattttctccttcctttaattttgatttccctcatgcacacaccataacaccAaaaagaagatccaaactctaagtttttttcaagtcggctatatatagctttataactatactaatataagttgagttgcataagcaagagcatggataTTtcatgctacttctgatgaggctgcaggaattaatggatggatcgatgatcgacttgagtttttaccagccactagaattgaaggaaccttgctgatcatgtgcactgatcatccgctgcctcttgatgctcccaccgccgccgccggcgccggaagaggagGTgtcgctgctcgccgctttgcggttcatgacgccgcgcagcgcctcgtggatcgacgcgacgagctcgtgcctccGgtgcgaggcggcaacgccgtagccgtgttcgccgtcgtcgtcgttcccggcctcgtctggatcttcctcctcgacggcggcgatgaggaGgacgctgcggacgcggccgccgagcgtggcgatctcggcgcggcgggcgcgcagccggagcgcggcgagcgcgcgggcgatgcccgggatgaggtcggcgcggtcctcgcagcacagcgaggccctcgccacgagcctccctccctcgtccgccgccgcgtccacctccagctcgtcgtcctccgtcggcagcagcaccaccggcgccgccgctgcctcccctcccgcggcgccgtcctccatcatcgccgacgtctgccgcttcagctccttgacgtgctcgatcacctccgccagcagcgacgccttgtccgtctgcaaacaCcacaaaacACAcaAacAccaatcagtgctcgatccgtcagctcagctcgcgccatcattagagaggtctcaagctttgggcgcatgctgcagaacacagcgtgcagtggctggcactagctaagtgtagtggaggtagctaggtaggaaggagaggagggagaagagacggggaagctgagtagtagtagtggaggaggtgcatgcgaggatggaggAaaagctacaaaaatcgcgggggccgtggcgcggcgtggcgtggcgtggcgtggcgtggcgcagcctttgcatgcgcgcgcgcacggcgcggcgctctggatcgccttttggggagcgcgctctggcacgggcgtgcgcgcttgtcgcgccgcgccgcgcgcggcgagagcgagagcactcgccccgacgaatccaaaggcttctctgctgcatctgcatgcgccaaactgatctctgcacaaattccttcctttattttttcttcttgtccatgtcagtgtatcagcatgcaaatgctctatatctatactactgggtgatctctacattggagcttagcttttggctttggtactcctatgcccaccacaccttgtctcttgccccccttaggttttggcttaggttacttaccattatgaaaatatggacattgtttgattggaacgcatgaattttacggaactaaatataatataattgaaattgtcgtgttttctgtacaatgattaatctttgatctaactttacacgattatttacaattaaaattgttgtgttttttatgatgattaatctttgatctaaaacgcatggattttacaaaattatgtaccatgaaaacaaggttGttttctgtatgatgatcaatattgagttcctttgaaaagagagagtgaataggtaggtagcttaagttttgtgtttgtgagagggtcatcatatatggtgtgacaatataattgccttggggAaaataattgaacacagtacatgagatggatcaaaaggcaaattaagataggaaagaacatgcatggttcctttgattcaagcatgtaatcatgctatgtgggttagttttgttgcaagacctaagtaagtacatgtagagttgcctccccaagaagctacctaagctaataggcagctactaagctactagatctgacttctcctttgctcgtaccacttctcaattaagtttttaattggtctgtttaattacttcgatcatcgattatatatttttgacttgttataatcagtagtatatatatctagatcttctgatagtctgaatcgattgtgcatcaaaaccatgcatcccagcttggttaggGTttGgacatgagcatgtcgaactgatgatcatcatccataggggaagaaggaaggtttggttagttaattaattaattcgattagtgcactgtgagattgtgagaagctgcacatgtagtaatatgtgagaaataatcatgtattcatggaggagatcgcctgaccttggtggtgttggggaggaggctgcggagcctggcgaggtggccgttgatgcgctggcggcggcggcgctcggcctcgctgtggctgcgcgacgccgccagcgccttggcgtccatgatctccttcgccgtcatcctcccgagctccgcctgcagcgtcccgagcagcccggacaccaccatcctcgacgacgacgaacccccgccgcccatctgcatcatcgtcagcggcggcggcgcctccatcccgtactgatgatgatgaggatggtgattatgccccgccacgcctccgcctccgtcgaagtagaagggctgctccaccggcagctgctcgccggcggcgaagggcgccgctgccgctgctgccgggggcatgtagagcggcgcggcggcgccggaggtggtcgcggccgcggccgagccgggccacggcaggagagccgtgccgtcgccgccgcctacagcttcccacat
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| CDS seq | atgtgggaagctgtaggcggcggcgacggcacggctctcctgccgtggcccggctcggccgcggccgcgaccacctccggcgccgccgcgccgctctacatgcccccggcagcagcggcagcggcgcccttcgccgccggcgagcagctgccggtggagcagcccttctacttcgacggaggcggaggcgtggcggggcataatcaccatcctcatcatcatcagtacgggatggaggcgccgccgccgctgacgatgatgcagatgggcggcgggggttcgtcgtcgtcgaggatggtggtgtccgggctgctcgggacgctgcaggcggagctcgggaggatgacggcgaaggagatcatggacgccaaggcgctggcggcgtcgcgcagccacagcgaggccgagcgccgccgccgccagcgcatcaacggccacctcgccaggctccgcagcctcctccccaacaccaccaagacggacaaggcgtcgctgctggcggaggtgatcgagcacgtcaaggagctgaagcggcagacgtcggcgatgatggaggacggcgccgcgggaggggaggcagcggcggcgccggtggtgctgctgccgacggaggacgacgagctggaggtggacgcggcggcggacgagggagggaggctcgtggcgagggcctcgctgtgctgcgaggaccgcgccgacctcatcccgggcatcgcccgcgcgctcgccgcgctccggctgcgcgcccgccgcgccgagatcgccacgctcggcggccgcgtccgcagcgtcCtcctcatcgccgccgtcgaggaggaagatccagacgaggccgggaacgacgacgacggcgaacacggctacggcgttgccgcctcgcacCggaggcacgagctcgtcgcgtcgatccacgaggcgctgcgcggcgtcatgaaccgcaaagcggcgagcagcgacACctcctcttccggcgccggcggcggcggtgggagcatcaagaggcagcggatgatcagtgcacatgatcagcaaggttccttcaattctagtggctggtaa
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| Protein seq | MWEAVGGGDGTALLPWPGSAAAATTSGAAAPLYMPPAAAAAAPFAAGEQLPVEQPFYFDGGGGVAGHNHHPHHHQYGMEAPPPLTMMQMGGGGSSSSRMVVSGLLGTLQAELGRMTAKEIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELKRQTSAMMEDGAAGGEAAAAPVVLLPTEDDELEVDAAADEGGRLVARASLCCEDRADLIPGIARALAALRLRARRAEIATLGGRVRSVLLIAAVEEEDPDEAGNDDDGEHGYGVAASHRRHELVASIHEALRGVMNRKAASSDTSSSGAGGGGGSIKRQRMISAHDQQGSFNSSGW |
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| Function | Transcription factor bHLH30 [UniProtKB/Swiss-Prot:Q9S7Y1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0016870 | OsNaBo_08g0016870.01 | Chr08 | 22374931 | 22377723 | - | NAM | ||
| CDS seq | atgtgggaagctgtaggcggcggcgacggcacggctctcctgccgtggcccggctcggccgcggccgcgaccacctccggcgccgccgcgccgctctacatgcccccggcagcagcggcagcggcgcccttcgccgccggcgagcagctgccggtggagcagcccttctacttcgacggaggcggaggcgtggcggggcataatcaccatcctcatcatcatcagtacgggatggaggcgccgccgccgctgacgatgatgcagatgggcggcgggggttcgtcgtcgtcgaggatggtggtgtccgggctgctcgggacgctgcaggcggagctcgggaggatgacggcgaaggagatcatggacgccaaggcgctggcggcgtcgcgcagccacagcgaggccgagcgccgccgccgccagcgcatcaacggccacctcgccaggctccgcagcctcctccccaacaccaccaagacggacaaggcgtcgctgctggcggaggtgatcgagcacgtcaaggagctgaagcggcagacgtcggcgatgatggaggacggcgccgcgggaggggaggcagcggcggcgccggtggtgctgctgccgacggaggacgacgagctggaggtggacgcggcggcggacgagggagggaggctcgtggcgagggcctcgctgtgctgcgaggaccgcgccgacctcatcccgggcatcgcccgcgcgctcgccgcgctccggctgcgcgcccgccgcgccgagatcgccacgctcggcggccgcgtccgcagcgtcCtcctcatcgccgccgtcgaggaggaagatccagacgaggccgggaacgacgacgacggcgaacacggctacggcgttgccgcctcgcacCggaggcacgagctcgtcgcgtcgatccacgaggcgctgcgcggcgtcatgaaccgcaaagcggcgagcagcgacACctcctcttccggcgccggcggcggcggtgggagcatcaagaggcagcggatgatcagtgcacatgatcagcaaggttccttcaattctagtggctggtaa
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| Protein seq | MWEAVGGGDGTALLPWPGSAAAATTSGAAAPLYMPPAAAAAAPFAAGEQLPVEQPFYFDGGGGVAGHNHHPHHHQYGMEAPPPLTMMQMGGGGSSSSRMVVSGLLGTLQAELGRMTAKEIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEHVKELKRQTSAMMEDGAAGGEAAAAPVVLLPTEDDELEVDAAADEGGRLVARASLCCEDRADLIPGIARALAALRLRARRAEIATLGGRVRSVLLIAAVEEEDPDEAGNDDDGEHGYGVAASHRRHELVASIHEALRGVMNRKAASSDTSSSGAGGGGGSIKRQRMISAHDQQGSFNSSGW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.196002 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0432800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33590 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0432800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017060 | RBH | 0.000000 | 0.000000 | 1.136267 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016930 | RBH | 0.093599 | 2.962552 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016880 | RBH | 0.0 | 0.0 | 0.439622 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017050 | RBH | 0.0 | 7.285438 | 0.909702 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0333400 | RBH | 0.6382685 | 6.1731935 | 3.231319 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0016940 | RBH | 0.0 | 0.377886 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0354300 | RBH | 1.164157 | 8.0042155 | 3.5682345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016310 | RBH | 0.0 | 0.330715 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016580 | RBH | 0.000000 | 7.196623 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016390 | RBH | 0.0 | 9.864171 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017210 | RBH | 0.000000 | 0.397606 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016610 | RBH | 0.0 | 1.253103 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016770 | RBH | 0.0 | 0.0 | 1.024199 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010150 | RBH | 0.000000 | 0.0 | 0.0 |
