Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0005230 | OGI:09025550 | 6/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:8729598-8732646 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggatatttgcaattctagcaatagtagtacattggaaatacattcaagtgggtgctggtccaccatttcaagaggaggagttattagaaatttagccagacgatgtatttgattcgattcttaaataaaaaaccgacagacctgttaattggtcgatgccacctgtgctccaaagagcagcgagagatatgacgagaactgaatagccgtcctcatcattggtttgcgatgtgcgaagaatgaccctgaagcttggacgaacggattggtgccaagagctggctcaaaagtctccaggttcttgtcaaacaccttgtaaaatggcaacaacatattacgggtggcatcaccgtcccaccgcagactgttccaccattgttcttctccacggatctgcttcaaccgagcaaagccaccgttgtctggctggaactggaacgggagctccttcagcaatgggcagccaaacacatctatgtattccaaacaagggcagaccagcttaaatgtgcagattgattccaagctcggcaggtggtttaactgtaatatcctgagtcttgacaggcaatggactctgctggcatctcttctctctccattttctgcgttggctaagaccgagttaagcttgctgcagaatgacagatcaagatgctccagctgcggaagtttgagcacccaggtgatgtcgccaagcccattgttctcaacgatacatagcattcggatgtagaggagctccacaccaatcttcacggaagacaacttgggcaagcgccagaaggtgaggtactccaactgcggaatggatttctctggatcttggccattgtcaagttcgattgacaattcttctacaccgaggcacatcctgaagtttaccaccgtgacggtactctgcagcttcaggctcacagtggactccccttccagttgttctacgccaagaaggtgtacgtaggcatcaggaagcagcgatagtgtgcgaagagcaccaacacttctcacagtaatacccagggatagccctgtgtgaaagcatctcagctctcctaaactgaattcatcatttctgcccgtaatgtttttgctcaactccaattcaaagcctgagtacttactctggtataagtacaatattttcagcatggacagactagatataacaccactgggtatgttcctaagatggttagtgtagctgaggttcaagaaccgtaagttcttcaggtcaccgaaattttccggcagacatgctatgtgtgaatcagcaaggtttaagcactgaaggtttactaatgaacaaacttctctgggcagctgttcaatctgtgtccagctaaggtccaaatacctgagagcagccatgcttgcacaaagggatggtgggatatcctttaaatgtaaattttgctgcagaactaacacagataggtcagaactgatcggctctgatggcagagaatctaagaagttgcacatcagtgatattcttgtggcacccttccatctcttgaaatcaacttcacagcttaacacatttcttaatcggtgcccagccttcagtagccagctatccttcttgcccttatagtccgaggcaatccagagggccatatcacggataatatcatggagtcgtacctctgattgtttgatatcaccttcctccagtaagcacaatcttttcaacttctcaattcgtgataatccaatgttatggctatcattgattgttctaccgacagggacgagacccaaaccaatccaacaattcacaagatcaactgtccaaattgaatagccttcaggccatagcaagcaaaccagaaaacattctttcagctgatcattctccaaattgtcataggaaatcctcagggtgctcagaatagggttaatgaccttcatctctgaagcttccaaaagctgagtgctctcatcaaaagttgacagggcattctcccactcgcgccacgttctctttgcacgcatggacctcccaacagtgattagtgccaaaggcaaaccacggcattttgcacaaactcttttcgcgacattttctatcggcatatctgcacatattgtttcttctgtagcactgtatttgaacagctcccatgcctcatcaggctgcaaacattccagtttgattcttttatcggcttccatcacacaacaaatttcctcagagcgagtagcaaagactactttctggatcttcgattcatttggaggtggaatgccaacctctagaagatcaacgtgctcccaaaggtcatccaggagcagcaaaaagttcttgttcttcagatggttgaagatggttgcggcacgagattctatgctatctccctgcttcgagagcaatcccagcttctctgctatgttcatctgaagattttccaggacgcaacccctggctgctgcaacacacataatatgatcaaagggcatattgtcaacaacaccaagaaactggttattgatgaccttcaagaagattgtctttcctactccccccatgccccatatgccaattaacctgatttttgcatcaagtagatagctcagaactttcatcacatttaaatgcattccaaccaatttttccctgataggcttctcctcaatggaaggtagaggtccatcaacagatacaacttcaaaagaacctctgtcatacaggtcaaccaattcctccagtttgtcagaggctctcctgctgatgttgaaatttgagatcaggtgtttggatcttttgctataatcttgcagtattgcatcaacttcagttcgggccagctcaactgtttgaagccaatctagcacttcatgcttacaggtttgttgtttgctcccagccatactgatcattagttttatgtcatcactcctagcctccaaccttctattgaattcagtgagcttgacaagaacctcttcaggtttgaaagcatacgcaatattcagttgcaaacagttgccgaagctgcaaagcacggccgagaaaattgattgcgaatgatgattggaagccat
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| CDS seq | atggcttccaatcatcattcgcaatcaattttctcggccgtgctttgcagcttcggcaactgtttgcaactgaatattgcgtatgctttcaaacctgaagaggttcttgtcaagctcactgaattcaatagaaggttggaggctaggagtgatgacataaaactaatgatcagtatggctgggagcaaacaacaaacctgtaagcatgaagtgctagattggcttcaaacagttgagctggcccgaactgaagttgatgcaatactgcaagattatagcaaaagatccaaacacctgatctcaaatttcaacatcagcaggagagcctctgacaaactggaggaattggttgacctgtatgacagaggttcttttgaagttgtatctgttgatggacctctaccttccattgaggagaagcctatcagggaaaaattggttggaatgcatttaaatgtgatgaaagttctgagctatctacttgatgcaaaaatcaggttaattggcatatggggcatggggggagtaggaaagacaatcttcttgaaggtcatcaataaccagtttcttggtgttgttgacaatatgccctttgatcatattatgtgtgttgcagcagccaggggttgcgtcctggaaaatcttcagatgaacatagcagagaagctgggattgctctcgaagcagggagatagcatagaatctcgtgccgcaaccatcttcaaccatctgaagaacaagaactttttgctgctcctggatgacctttgggagcacgttgatcttctagaggttggcattccacctccaaatgaatcgaagatccagaaagtagtctttgctactcgctctgaggaaatttgttgtgtgatggaagccgataaaagaatcaaactggaatgtttgcagcctgatgaggcatgggagctgttcaaatacagtgctacagaagaaacaatatgtgcagatatgccgatagaaaatgtcgcgaaaagagtttgtgcaaaatgccgtggtttgcctttggcactaatcactgttgggaggtccatgcgtgcaaagagaacgtggcgcgagtgggagaatgccctgtcaacttttgatgagagcactcagcttttggaagcttcagagatgaaggtcattaaccctattctgagcaccctgaggatttcctatgacaatttggagaatgatcagctgaaagaatgttttctggtttgcttgctatggcctgaaggctattcaatttggacagttgatcttgtgaattgttggattggtttgggtctcgtccctgtcggtagaacaatcaatgatagccataacattggattatcacgaattgagaagttgaaaagattgtgcttactggaggaaggtgatatcaaacaatcagaggtacgactccatgatattatccgtgatatggccctctggattgcctcggactataagggcaagaaggatagctggctactgaaggctgggcaccgattaagaaatgtgttaagctgtgaagttgatttcaagagatggaagggtgccacaagaatatcactgatgtgcaacttcttagattctctgccatcagagccgatcagttctgacctatctgtgttagttctgcagcaaaatttacatttaaaggatatcccaccatccctttgtgcaagcatggctgctctcaggtatttggaccttagctggacacagattgaacagctgcccagagaagtttgttcattagtaaaccttcagtgcttaaaccttgctgattcacacatagcatgtctgccggaaaatttcggtgacctgaagaacttacggttcttgaacctcagctacactaaccatcttaggaacatacccagtggtgttatatctagtctgtccatgctgaaaatattgtacttataccagagtaagtactcaggctttgaattggagttgagcaaaaacattacgggcagaaatgatgaattcagtttaggagagctgagatgctttcacacagggctatccctgggtattactgtgagaagtgttggtgctcttcgcacactatcgctgcttcctgatgcctacgtacaccttcttggcgtagaacaactggaaggggagtccactgtgagcctgaagctgcagagtaccgtcacggtggtaaacttcaggatgtgcctcggtgtagaagaattgtcaatcgaacttgacaatggccaagatccagagaaatccattccgcagttggagtacctcaccttctggcgcttgcccaagttgtcttccgtgaagattggtgtggagctcctctacatccgaatgctatgtatcgttgagaacaatgggcttggcgacatcacctgggtgctcaaacttccgcagctggagcatcttgatctgtcattctgcagcaagcttaactcggtcttagccaacgcagaaaatggagagagaagagatgccagcagagtccattgcctgtcaagactcaggatattacagttaaaccacctgccgagcttggaatcaatctgcacatttaagctggtctgcccttgtttggaatacatagatgtgtttggctgcccattgctgaaggagctcccgttccagttccagccagacaacggtggctttgctcggttgaagcagatccgtggagaagaacaatggtggaacagtctgcggtgggacggtgatgccacccgtaatatgttgttgccattttacaaggtgtttgacaagaacctggagacttttgagccagctcttggcaccaatccgttcgtccaagcttcagggtcattcttcgcacatcgcaaaccaatgatgaggacggctattcagttctcgtcatatctctcgctgctctttggagcacaggtggcatcgaccaattaa
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| Protein seq | MASNHHSQSIFSAVLCSFGNCLQLNIAYAFKPEEVLVKLTEFNRRLEARSDDIKLMISMAGSKQQTCKHEVLDWLQTVELARTEVDAILQDYSKRSKHLISNFNISRRASDKLEELVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVGMHLNVMKVLSYLLDAKIRLIGIWGMGGVGKTIFLKVINNQFLGVVDNMPFDHIMCVAAARGCVLENLQMNIAEKLGLLSKQGDSIESRAATIFNHLKNKNFLLLLDDLWEHVDLLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLECLQPDEAWELFKYSATEETICADMPIENVAKRVCAKCRGLPLALITVGRSMRAKRTWREWENALSTFDESTQLLEASEMKVINPILSTLRISYDNLENDQLKECFLVCLLWPEGYSIWTVDLVNCWIGLGLVPVGRTINDSHNIGLSRIEKLKRLCLLEEGDIKQSEVRLHDIIRDMALWIASDYKGKKDSWLLKAGHRLRNVLSCEVDFKRWKGATRISLMCNFLDSLPSEPISSDLSVLVLQQNLHLKDIPPSLCASMAALRYLDLSWTQIEQLPREVCSLVNLQCLNLADSHIACLPENFGDLKNLRFLNLSYTNHLRNIPSGVISSLSMLKILYLYQSKYSGFELELSKNITGRNDEFSLGELRCFHTGLSLGITVRSVGALRTLSLLPDAYVHLLGVEQLEGESTVSLKLQSTVTVVNFRMCLGVEELSIELDNGQDPEKSIPQLEYLTFWRLPKLSSVKIGVELLYIRMLCIVENNGLGDITWVLKLPQLEHLDLSFCSKLNSVLANAENGERRDASRVHCLSRLRILQLNHLPSLESICTFKLVCPCLEYIDVFGCPLLKELPFQFQPDNGGFARLKQIRGEEQWWNSLRWDGDATRNMLLPFYKVFDKNLETFEPALGTNPFVQASGSFFAHRKPMMRTAIQFSSYLSLLFGAQVASTN |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0005230 | OsNaBo_09g0005230.01 | Chr09 | 8729598 | 8732646 | - | NAM | ||
| CDS seq | atggcttccaatcatcattcgcaatcaattttctcggccgtgctttgcagcttcggcaactgtttgcaactgaatattgcgtatgctttcaaacctgaagaggttcttgtcaagctcactgaattcaatagaaggttggaggctaggagtgatgacataaaactaatgatcagtatggctgggagcaaacaacaaacctgtaagcatgaagtgctagattggcttcaaacagttgagctggcccgaactgaagttgatgcaatactgcaagattatagcaaaagatccaaacacctgatctcaaatttcaacatcagcaggagagcctctgacaaactggaggaattggttgacctgtatgacagaggttcttttgaagttgtatctgttgatggacctctaccttccattgaggagaagcctatcagggaaaaattggttggaatgcatttaaatgtgatgaaagttctgagctatctacttgatgcaaaaatcaggttaattggcatatggggcatggggggagtaggaaagacaatcttcttgaaggtcatcaataaccagtttcttggtgttgttgacaatatgccctttgatcatattatgtgtgttgcagcagccaggggttgcgtcctggaaaatcttcagatgaacatagcagagaagctgggattgctctcgaagcagggagatagcatagaatctcgtgccgcaaccatcttcaaccatctgaagaacaagaactttttgctgctcctggatgacctttgggagcacgttgatcttctagaggttggcattccacctccaaatgaatcgaagatccagaaagtagtctttgctactcgctctgaggaaatttgttgtgtgatggaagccgataaaagaatcaaactggaatgtttgcagcctgatgaggcatgggagctgttcaaatacagtgctacagaagaaacaatatgtgcagatatgccgatagaaaatgtcgcgaaaagagtttgtgcaaaatgccgtggtttgcctttggcactaatcactgttgggaggtccatgcgtgcaaagagaacgtggcgcgagtgggagaatgccctgtcaacttttgatgagagcactcagcttttggaagcttcagagatgaaggtcattaaccctattctgagcaccctgaggatttcctatgacaatttggagaatgatcagctgaaagaatgttttctggtttgcttgctatggcctgaaggctattcaatttggacagttgatcttgtgaattgttggattggtttgggtctcgtccctgtcggtagaacaatcaatgatagccataacattggattatcacgaattgagaagttgaaaagattgtgcttactggaggaaggtgatatcaaacaatcagaggtacgactccatgatattatccgtgatatggccctctggattgcctcggactataagggcaagaaggatagctggctactgaaggctgggcaccgattaagaaatgtgttaagctgtgaagttgatttcaagagatggaagggtgccacaagaatatcactgatgtgcaacttcttagattctctgccatcagagccgatcagttctgacctatctgtgttagttctgcagcaaaatttacatttaaaggatatcccaccatccctttgtgcaagcatggctgctctcaggtatttggaccttagctggacacagattgaacagctgcccagagaagtttgttcattagtaaaccttcagtgcttaaaccttgctgattcacacatagcatgtctgccggaaaatttcggtgacctgaagaacttacggttcttgaacctcagctacactaaccatcttaggaacatacccagtggtgttatatctagtctgtccatgctgaaaatattgtacttataccagagtaagtactcaggctttgaattggagttgagcaaaaacattacgggcagaaatgatgaattcagtttaggagagctgagatgctttcacacagggctatccctgggtattactgtgagaagtgttggtgctcttcgcacactatcgctgcttcctgatgcctacgtacaccttcttggcgtagaacaactggaaggggagtccactgtgagcctgaagctgcagagtaccgtcacggtggtaaacttcaggatgtgcctcggtgtagaagaattgtcaatcgaacttgacaatggccaagatccagagaaatccattccgcagttggagtacctcaccttctggcgcttgcccaagttgtcttccgtgaagattggtgtggagctcctctacatccgaatgctatgtatcgttgagaacaatgggcttggcgacatcacctgggtgctcaaacttccgcagctggagcatcttgatctgtcattctgcagcaagcttaactcggtcttagccaacgcagaaaatggagagagaagagatgccagcagagtccattgcctgtcaagactcaggatattacagttaaaccacctgccgagcttggaatcaatctgcacatttaagctggtctgcccttgtttggaatacatagatgtgtttggctgcccattgctgaaggagctcccgttccagttccagccagacaacggtggctttgctcggttgaagcagatccgtggagaagaacaatggtggaacagtctgcggtgggacggtgatgccacccgtaatatgttgttgccattttacaaggtgtttgacaagaacctggagacttttgagccagctcttggcaccaatccgttcgtccaagcttcagggtcattcttcgcacatcgcaaaccaatgatgaggacggctattcagttctcgtcatatctctcgctgctctttggagcacaggtggcatcgaccaattaa
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| Protein seq | MASNHHSQSIFSAVLCSFGNCLQLNIAYAFKPEEVLVKLTEFNRRLEARSDDIKLMISMAGSKQQTCKHEVLDWLQTVELARTEVDAILQDYSKRSKHLISNFNISRRASDKLEELVDLYDRGSFEVVSVDGPLPSIEEKPIREKLVGMHLNVMKVLSYLLDAKIRLIGIWGMGGVGKTIFLKVINNQFLGVVDNMPFDHIMCVAAARGCVLENLQMNIAEKLGLLSKQGDSIESRAATIFNHLKNKNFLLLLDDLWEHVDLLEVGIPPPNESKIQKVVFATRSEEICCVMEADKRIKLECLQPDEAWELFKYSATEETICADMPIENVAKRVCAKCRGLPLALITVGRSMRAKRTWREWENALSTFDESTQLLEASEMKVINPILSTLRISYDNLENDQLKECFLVCLLWPEGYSIWTVDLVNCWIGLGLVPVGRTINDSHNIGLSRIEKLKRLCLLEEGDIKQSEVRLHDIIRDMALWIASDYKGKKDSWLLKAGHRLRNVLSCEVDFKRWKGATRISLMCNFLDSLPSEPISSDLSVLVLQQNLHLKDIPPSLCASMAALRYLDLSWTQIEQLPREVCSLVNLQCLNLADSHIACLPENFGDLKNLRFLNLSYTNHLRNIPSGVISSLSMLKILYLYQSKYSGFELELSKNITGRNDEFSLGELRCFHTGLSLGITVRSVGALRTLSLLPDAYVHLLGVEQLEGESTVSLKLQSTVTVVNFRMCLGVEELSIELDNGQDPEKSIPQLEYLTFWRLPKLSSVKIGVELLYIRMLCIVENNGLGDITWVLKLPQLEHLDLSFCSKLNSVLANAENGERRDASRVHCLSRLRILQLNHLPSLESICTFKLVCPCLEYIDVFGCPLLKELPFQFQPDNGGFARLKQIRGEEQWWNSLRWDGDATRNMLLPFYKVFDKNLETFEPALGTNPFVQASGSFFAHRKPMMRTAIQFSSYLSLLFGAQVASTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 7.757574 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0311600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0311600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006610 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006620 | SBH | 0.0 | 0.382289 | 0.162114 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005070 | RBH | 0.0 | 0.249771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005280 | RBH | 0.343338 | 8.494011 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0148800 | RBH | 0.0741455 | 16.309004 | 0.086277 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005440 | RBH | 0.0 | 0.669676 | 0.040421 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0135000 | SBH | 0.968477 | 1.6807265 | 3.170157 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006690 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006540 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006520 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007020 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
