Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_09g0006620 | OGI:09032130 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr09:10962793-10964917 | ||||||||
| Gene Symbol | RPS2, OsRPS2, - | ||||||||||
| DNA seq | tcagaggcacacagcagatccattccatagcacgaatggcagtcttgccagcatagggcactcgtacacaagcagccgctgcaagcatggaaatccaagtctcccatcaccacatattttgtaaagatccttgagatgacttagcccgaggtgcctgaggcgaggaaatgatgatgaagctgttgccgatggcatggtggtatcttcctcatcatcatcactcactacctccaacagtgagttgcagttgtataaatacacctcttctaggcaaggaagctggttgatccaagtgagtgtcttgatgctgtggcagccgatgatatctaccgtacgaaccttaggaaagcaagcatgtggcatcacccctttccacatgatgcttcccagttttgtgaggtgatgcaatctgaattcatcgagattttggaagcaccaatctgaataatccacactggtttcactttcaccacctatcatcaacttctccaaactcttcatatagctcagagccagaacttctagatgttgtgcccttgctttgctgataagttgggacgaaacttggaggcgtcccaatcctgtctcgcagggagactctggacaaattgaagatcctcctgagcgactggaaatcaaccactgtgaccctgagaagctgcaaactggtcaagctctccagttcctcaagatatgaccgtgctttcacctttgtgaaaaaaacactgccgtgtatatccagcaccctcagcatacttagtgccgatatggtgccatctgggactgtttggagtttgcgtgtataccttaaatataggtacctcagtttcttcaataatctgaactccactgggagtgattggattggtgtgtatgaaagatcaaggtgctgcaagttcagtaatgctccaatatcagatggaagttgttcaatattagtacaatacagatccaggtaggtaagagataaagcgactccaaagaacccagcctagttaacatgcaaatctgactggcctgtctcattatgagagttaacaggtgaggacaatagcaagaattagggattgtaacatttttgttgtgcaagaggcgaattctttcggccatgctccactcttttggatcaataagttttctttggtcagagacgactaaccactttttgttagaaccgtttgccctttttgttgctgtaatccaaagggccagatcttggatgcagtcatgcatcctcaaatacttctcccctagaggatgtccttctaatagacaagctctttttaaacaagcaacgactgagtaacctctcaaattgctgtttccaatatcatcatcttcatctagtaatccatggcccatccaaaaacttcgtgtaggactctgtgcatacagttccatagctagcgaaggcaaagaaaagaaagcattgctttgtcctctcatctggcaggttgtcataactaatgtacagtacagaatatagatcattttctacatccgggaccttgtggaattgtgattgttcaagcaaattcacagctagttcccattcatgttcagttccttttgatgccatagcctgaccaacaatcttaagagcaagcggaaggcctccacacttctccactatgctctcggcatgacacttgacttgcacgttattggttattctaatacccgcatttgattcaaagagactccatgcttcattaaacttcaacctttgcaacacaatcatctggcaatgcccgtccataccataacaaacttgttgcaaacgtgatgttattactatcatctgcctgttttgagggcccaattgccgaccaccttgcggtatgccgaccttcaccaggtctagtgtttgccaaagatcatctatcagaagtaggaagctcctttccttcaagaagttataaagggatgcagacctaaatgtagcgtccttgttctgtgtcagcataatgccaagttgggatgcgatgttctgctgaactgtctccagattttgctgctgactgacctccacatagatgacatgatcgaattcgtgtgtttctgcagcgcagctgaagatgttgttcaattgtttgaggagagtagttttgccagaccctcccat
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| CDS seq | atgggagggtctggcaaaactactctcctcaaacaattgaacaacatcttcagctgcgctgcagaaacacacgaattcgatcatgtcatctatgtggaggtcagtcagcagcaaaatctggagacagttcagcagaacatcgcatcccaacttggcattatgctgacacagaacaaggacgctacatttaggtctgcatccctttataacttcttgaaggaaaggagcttcctacttctgatagatgatctttggcaaacactagacctggtgaaggtcggcataccgcaaggtggtcggcaattgggccctcaaaacaggcagatgatagtaataacatcacgtttgcaacaagtttgttatggtatggacgggcattgccagatgattgtgttgcaaaggttgaagtttaatgaagcatggagtctctttgaatcaaatgcgggtattagaataaccaataacgtgcaagtcaagtgtcatgccgagagcatagtggagaagtgtggaggccttccgcttgctcttaagattgttggtcaggctatggcatcaaaaggaactgaacatgaatgggaactagctgtgaatttgcttgaacaatcacaattccacaaggtcccggatgtagaaaatgatctatattctgtactgtacattagttatgacaacctgccagatgagaggacaaagcaatgctttcttttctttgccttcgctagctatggaactagtcctacacgaagtttttggatgggccatggattactagatgaagatgatgatattggaaacagcaatttgagaggttactcagtcgttgcttgtttaaaaagagcttgtctattagaaggacatcctctaggggagaagtatttgaggatgcatgactgcatccaagatctggccctttggattacagcaacaaaaagggcaaacggttctaacaaaaagtggttagtcgtctctgaccaaagaaaacttattgatccaaaagagtggagcatggccgaaagaattcgcctcttgcacaacaaaaatgctgggttctttggagtcgctttatctcttacctacctggatctgtattgtactaatattgaacaacttccatctgatattggagcattactgaacttgcagcaccttgatctttcatacacaccaatccaatcactcccagtggagttcagattattgaagaaactgaggtacctatatttaaggtatacacgcaaactccaaacagtcccagatggcaccatatcggcactaagtatgctgagggtgctggatatacacggcagtgtttttttcacaaaggtgaaagcacggtcatatcttgaggaactggagagcttgaccagtttgcagcttctcagggtcacagtggttgatttccagtcgctcaggaggatcttcaatttgtccagagtctccctgcgagacaggattgggacgcctccaagtttcgtcccaacttatcagcaaagcaagggcacaacatctagaagttctggctctgagctatatgaagagtttggagaagttgatgatagattgcatcacctcacaaaactgggaagcatcatgtggaaaggggtgatgccacatgcttgctttcctaaggttcgtacggtagatatcatcggctgccacagcatcaagacactcacttggatcaaccagcttccttgcctagaagaggtgtatttatacaactgcaactcactgttggaggtagtgagtgatgatgatgaggaagataccaccatgccatcggcaacagcttcatcatcatttcctcgcctcaggcacctcgggctaagtcatctcaaggatctttacaaaatatgtggtgatgggagacttggatttccatgcttgcagcggctgcttgtgtacgagtgccctatgctggcaagactgccattcgtgctatggaatggatctgctgtgtgcctctga
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| Protein seq | MGGSGKTTLLKQLNNIFSCAAETHEFDHVIYVEVSQQQNLETVQQNIASQLGIMLTQNKDATFRSASLYNFLKERSFLLLIDDLWQTLDLVKVGIPQGGRQLGPQNRQMIVITSRLQQVCYGMDGHCQMIVLQRLKFNEAWSLFESNAGIRITNNVQVKCHAESIVEKCGGLPLALKIVGQAMASKGTEHEWELAVNLLEQSQFHKVPDVENDLYSVLYISYDNLPDERTKQCFLFFAFASYGTSPTRSFWMGHGLLDEDDDIGNSNLRGYSVVACLKRACLLEGHPLGEKYLRMHDCIQDLALWITATKRANGSNKKWLVVSDQRKLIDPKEWSMAERIRLLHNKNAGFFGVALSLTYLDLYCTNIEQLPSDIGALLNLQHLDLSYTPIQSLPVEFRLLKKLRYLYLRYTRKLQTVPDGTISALSMLRVLDIHGSVFFTKVKARSYLEELESLTSLQLLRVTVVDFQSLRRIFNLSRVSLRDRIGTPPSFVPTYQQSKGTTSRSSGSELYEEFGEVDDRLHHLTKLGSIMWKGVMPHACFPKVRTVDIIGCHSIKTLTWINQLPCLEEVYLYNCNSLLEVVSDDDEEDTTMPSATASSSFPRLRHLGLSHLKDLYKICGDGRLGFPCLQRLLVYECPMLARLPFVLWNGSAVCL |
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| Function | Disease resistance protein RPS2 [UniProtKB/Swiss-Prot:Q42484] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_09g0006620 | OsKeNa_09g0006620.01 | Chr09 | 10962793 | 10964917 | - | NAM | ||
| CDS seq | atgggagggtctggcaaaactactctcctcaaacaattgaacaacatcttcagctgcgctgcagaaacacacgaattcgatcatgtcatctatgtggaggtcagtcagcagcaaaatctggagacagttcagcagaacatcgcatcccaacttggcattatgctgacacagaacaaggacgctacatttaggtctgcatccctttataacttcttgaaggaaaggagcttcctacttctgatagatgatctttggcaaacactagacctggtgaaggtcggcataccgcaaggtggtcggcaattgggccctcaaaacaggcagatgatagtaataacatcacgtttgcaacaagtttgttatggtatggacgggcattgccagatgattgtgttgcaaaggttgaagtttaatgaagcatggagtctctttgaatcaaatgcgggtattagaataaccaataacgtgcaagtcaagtgtcatgccgagagcatagtggagaagtgtggaggccttccgcttgctcttaagattgttggtcaggctatggcatcaaaaggaactgaacatgaatgggaactagctgtgaatttgcttgaacaatcacaattccacaaggtcccggatgtagaaaatgatctatattctgtactgtacattagttatgacaacctgccagatgagaggacaaagcaatgctttcttttctttgccttcgctagctatggaactagtcctacacgaagtttttggatgggccatggattactagatgaagatgatgatattggaaacagcaatttgagaggttactcagtcgttgcttgtttaaaaagagcttgtctattagaaggacatcctctaggggagaagtatttgaggatgcatgactgcatccaagatctggccctttggattacagcaacaaaaagggcaaacggttctaacaaaaagtggttagtcgtctctgaccaaagaaaacttattgatccaaaagagtggagcatggccgaaagaattcgcctcttgcacaacaaaaatgctgggttctttggagtcgctttatctcttacctacctggatctgtattgtactaatattgaacaacttccatctgatattggagcattactgaacttgcagcaccttgatctttcatacacaccaatccaatcactcccagtggagttcagattattgaagaaactgaggtacctatatttaaggtatacacgcaaactccaaacagtcccagatggcaccatatcggcactaagtatgctgagggtgctggatatacacggcagtgtttttttcacaaaggtgaaagcacggtcatatcttgaggaactggagagcttgaccagtttgcagcttctcagggtcacagtggttgatttccagtcgctcaggaggatcttcaatttgtccagagtctccctgcgagacaggattgggacgcctccaagtttcgtcccaacttatcagcaaagcaagggcacaacatctagaagttctggctctgagctatatgaagagtttggagaagttgatgatagattgcatcacctcacaaaactgggaagcatcatgtggaaaggggtgatgccacatgcttgctttcctaaggttcgtacggtagatatcatcggctgccacagcatcaagacactcacttggatcaaccagcttccttgcctagaagaggtgtatttatacaactgcaactcactgttggaggtagtgagtgatgatgatgaggaagataccaccatgccatcggcaacagcttcatcatcatttcctcgcctcaggcacctcgggctaagtcatctcaaggatctttacaaaatatgtggtgatgggagacttggatttccatgcttgcagcggctgcttgtgtacgagtgccctatgctggcaagactgccattcgtgctatggaatggatctgctgtgtgcctctga
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| Protein seq | MGGSGKTTLLKQLNNIFSCAAETHEFDHVIYVEVSQQQNLETVQQNIASQLGIMLTQNKDATFRSASLYNFLKERSFLLLIDDLWQTLDLVKVGIPQGGRQLGPQNRQMIVITSRLQQVCYGMDGHCQMIVLQRLKFNEAWSLFESNAGIRITNNVQVKCHAESIVEKCGGLPLALKIVGQAMASKGTEHEWELAVNLLEQSQFHKVPDVENDLYSVLYISYDNLPDERTKQCFLFFAFASYGTSPTRSFWMGHGLLDEDDDIGNSNLRGYSVVACLKRACLLEGHPLGEKYLRMHDCIQDLALWITATKRANGSNKKWLVVSDQRKLIDPKEWSMAERIRLLHNKNAGFFGVALSLTYLDLYCTNIEQLPSDIGALLNLQHLDLSYTPIQSLPVEFRLLKKLRYLYLRYTRKLQTVPDGTISALSMLRVLDIHGSVFFTKVKARSYLEELESLTSLQLLRVTVVDFQSLRRIFNLSRVSLRDRIGTPPSFVPTYQQSKGTTSRSSGSELYEEFGEVDDRLHHLTKLGSIMWKGVMPHACFPKVRTVDIIGCHSIKTLTWINQLPCLEEVYLYNCNSLLEVVSDDDEEDTTMPSATASSSFPRLRHLGLSHLKDLYKICGDGRLGFPCLQRLLVYECPMLARLPFVLWNGSAVCL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.382289 | 0.162114 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0345600 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g14410 | SBH | 0.325649 | 0.532117 | 0.344777 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0345600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006610 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006850 | SBH | 0.0 | 0.0 | 1.616878 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006710 | SBH | 0.0 | 0.035942 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006810 | SBH | 0.0 | 0.0 | 0.445530 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0189000 | SBH | 0.812915 | 1.7263095 | 1.461545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006840 | SBH | 0.000000 | 0.0 | 0.094037 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0165100 | SBH | 0.8195285 | 1.7069935 | 3.412337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006690 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006540 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006450 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006520 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007020 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006880 | SBH | 0.0 | 0.0 | 0.0 |
