Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_09g0000400 | OGI:11004300 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr09:558822-562444 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaatccataagttttcttttgctcctagtgcccattgcaggactcttatttttgctccttgtgctcatagctgggctaccaggagtactagaacatgatggctttccctttgtcttgctcttggtcatttttggtgcaactgtaggtgtttcctcccccagacatggcaaggctacaatcatgttagattgctcaagttggttggagccagtaagtgatgttgatctgaaaaggagaattgtgaatatattgcatagaacaacataataccagcaaattgacataattgatctaattacttacctaattgatatacttgaacccaagctattgttccatgctatattgtcctcggtgaaattaaagttttgactgtgaaaaataaactattatgtagctaattgatctaaatccaatgtagaatgaaataaagaagatttgctaacctaggagggtatgccattattggtgtaactattggagcagccatgatactagtctccgaggttgcttcattagttttcttcgttctcttctttggtggccctctatgaacaagagaaaatatatgtcataaggcttgttagaaatagaatggaaatttgtgagacaaatatatacaagtgtttaggtaattaaatcgaaccaccacattactttctaatcttatccattaattataatgtctagtactacaaggatggaatgtcatgacatatatttatcaacttacacagttgcctaaattgtaaccaccaactacaatgaataaaagacttgcaatgatatgtacctttcagcaatcattgctgctacttcctctggatcaccctcttttcaattgtgccaatgatggccataactcttgcaaattgggcatttgtgcctcctactccttttgcttcctttctcagtgcatcctttgtacctcatagttcttggtctcccagctgatttcttcagaatgggtggtgccaagaaaaacccatgatcagcttttggccattgtgccttgtcaggtaatgaagggatcaatttctcatatgctgccctgaatcgatgcacactaaagcaatcatccacataatctgcaagccttcctctaattgatgtgatgaatgctatagcatggatacaaggcttccctgagatttggaattccctacatgtacatgttttgtgctccaaattcacaacatgtctaaacccactacctcccttgacctcaatttctgcctcaaagtctccattccttgtgaccaccatgtctaaatctctacttttttcattcaattccttgacaatatgaggtagaatgcagccttcaaatttcttacctattctttgcctcttatcccatttcaccaacaaccaccgccgaatcctctccaagaagtcatataaatgtagtgctttccaatctttcaccaaattgttgaagctttctgcaaggttatttgtcacataatcaaccttgctaattgtagagaactgactcctactccatagccttttgtgatacttcttaaggtatgctactgcttctggtttaacttcttgtatggctgccatatgtttctcatagaagtatgggctccatgcatatgccgcaggccaaaggttatcatcaaaaatcttgccggtgaacttctttttgaagttggtgaccatgtgcttcatgcactcccggtgttctgcattacgaaagacctacaagaaaggagaatcttagctcattttagctattattaaagaaaataacagaatatattagctgcataggaaagcaatttacctcatgcactgcactatctatccccttccctgcatcagtacaaatagccaagccacttggagtgccaattgcatcttttagttgttccatgaaccacatccagttctcagcagtctctgagtcaaatatacccaaagcaactgggtacatccagttatgtccatctacagcacaagcaattgctagctgccccttaaacttgcccgttaagaaagtactgtctatggccaaatatggcctacaaccagtaaggaaaccatgaaaacatggtttcaaggcaaagaacaaccttctgaattttatctcttcaagaacagtgtgatgatcaatgatgaaaaaactgccgggacttgatttctcaatttgtgccttgtatctatataacatgtcaaaactctctctccaactaccatacaactttgtgatagcaagctccctaccagcatgcacccttttgtagttgatcttaaccttatgtgtttcatggattcttctttgcaattcctttgctcccacactagcatcctccaacaaccaatcttttaccttctcacaaatccaaaacttgcttgcagccttgatagtctcacttcttctagtacttgagcattcatgtggcacaggattagttttcacctgaaatgtaaatatagtcaataccacaataatatatatatatatatatatatatatatgacaatatacttaaagaatgcatgctgatttaaattAaaaacataccatcatagtgacaccatcagcaaccacggatgcatgaatcctccatttgcagcctttagcagcacaacttgcagtatattgccctggttcacttcggatgatgttatattcaaactccttttttattgcatgttgtgctattgccaatctaaattcattaatgtttggatatacgctgcctacgatcattggtgggtcatttttgtcataagttgcaataggaatatgttcaggcatcccatctgatgccattgactcatcctcggattcattgacaccatcatcctcagatgcatcctcagattcatcctcagatgtagcccaagattcatcctcggatacttcattgacagccccttcacctctagtttcatcagcatgaccaacaacagcctcctcctcatctaagtatatgtcttcctcatcaacaccaacatgttcagccataggaaatgggtttactaagtatgtgtctgatgacacaatgacatgagaaggaagagtgctgctgctaggttggctgaaatccacttgagatggggttgccaaagaaggagtatcgggaacacatgcgctttctttaacaagagtgtggtctaactcatcaatactttcattaataccatgtatgcgaataatcattggaatcaccttgatatcaacaaacttttcaaacattgcaagcatatcctggtcagttgtgacatgatgagtaattttatgaaccatatccacgtagccaactgtgacagtttcatttggcccccatggatatgacttcgcaatatcatcaataaagtctttgtagcacatcgcatttgagtctatcactttactgaaaataaaccaatcatattccaccctagcattttttcgatccccggctagtttgatttccaacaaatatgtagttaaggggtccatcctgtggatgaacacaatagtatgtatctatcaatgtatgtatctatcaaccaaaatgatctccacgcatacaactacgtcaaaattatgaacgacggaaagttaagtcacttaccctacggggagccatgaaggaatcgtgctaagcattgaatctgccat
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| CDS seq | atggcagattcaatgcttagcacgattccttcatggctccccgtagggatggaccccttaactacatatttgttggaaatcaaactagccggggatcgaaaaaatgctagggtggaatatgattggtttattttcagtaaagtgatagactcaaatgcgatgtgctacaaagactttattgatgatattgcgaagtcatatccatgggggccaaatgaaactgtcacagttggctacgtggatatggttcataaaattactcatcatgtcacaactgaccaggatatgcttgcaatgtttgaaaagtttgttgatatcaaggtgattccaatgattattcgcatacatggtattaatgaaagtattgatgagttagaccacactcttgttaaagaaagcgcatgtgttcccgatactccttctttggcaaccccatctcaagtggatttcagccaacctagcagcagcactcttccttctcatgtcattgtgtcatcagacacatacttagtaaacccatttcctatggctgaacatgttggtgttgatgaggaagacatatacttagatgaggaggaggctgttgttgggccaccaaagaagagaacgaagaaaactaatgaagcaacctcggagactagtatcatggctgctccaatagttacaccaataatggcataccctcctagatcaacatcacttactggctccaaccaacttgagcaatctaacatgattgtagccttgccatgtctgggggaggaaacacctacagttgcaccaaaaatgaccaagagcaagacaaagggaaagccatcatgttctagtactcctggtagcccagctatgagcacaaggagcaaaaataagagtcctgcaatgggcactaggagcaaaagaaaacttatggattga
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| Protein seq | MADSMLSTIPSWLPVGMDPLTTYLLEIKLAGDRKNARVEYDWFIFSKVIDSNAMCYKDFIDDIAKSYPWGPNETVTVGYVDMVHKITHHVTTDQDMLAMFEKFVDIKVIPMIIRIHGINESIDELDHTLVKESACVPDTPSLATPSQVDFSQPSSSTLPSHVIVSSDTYLVNPFPMAEHVGVDEEDIYLDEEEAVVGPPKKRTKKTNEATSETSIMAAPIVTPIMAYPPRSTSLTGSNQLEQSNMIVALPCLGEETPTVAPKMTKSKTKGKPSCSSTPGSPAMSTRSKNKSPAMGTRSKRKLMD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_09g0000400 | OsNaBo_09g0000400.01 | Chr09 | 558822 | 562444 | - | NAM | ||
| CDS seq | atggcagattcaatgcttagcacgattccttcatggctccccgtagggatggaccccttaactacatatttgttggaaatcaaactagccggggatcgaaaaaatgctagggtggaatatgattggtttattttcagtaaagtgatagactcaaatgcgatgtgctacaaagactttattgatgatattgcgaagtcatatccatgggggccaaatgaaactgtcacagttggctacgtggatatggttcataaaattactcatcatgtcacaactgaccaggatatgcttgcaatgtttgaaaagtttgttgatatcaaggtgattccaatgattattcgcatacatggtattaatgaaagtattgatgagttagaccacactcttgttaaagaaagcgcatgtgttcccgatactccttctttggcaaccccatctcaagtggatttcagccaacctagcagcagcactcttccttctcatgtcattgtgtcatcagacacatacttagtaaacccatttcctatggctgaacatgttggtgttgatgaggaagacatatacttagatgaggaggaggctgttgttgggccaccaaagaagagaacgaagaaaactaatgaagcaacctcggagactagtatcatggctgctccaatagttacaccaataatggcataccctcctagatcaacatcacttactggctccaaccaacttgagcaatctaacatgattgtagccttgccatgtctgggggaggaaacacctacagttgcaccaaaaatgaccaagagcaagacaaagggaaagccatcatgttctagtactcctggtagcccagctatgagcacaaggagcaaaaataagagtcctgcaatgggcactaggagcaaaagaaaacttatggattga
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| Protein seq | MADSMLSTIPSWLPVGMDPLTTYLLEIKLAGDRKNARVEYDWFIFSKVIDSNAMCYKDFIDDIAKSYPWGPNETVTVGYVDMVHKITHHVTTDQDMLAMFEKFVDIKVIPMIIRIHGINESIDELDHTLVKESACVPDTPSLATPSQVDFSQPSSSTLPSHVIVSSDTYLVNPFPMAEHVGVDEEDIYLDEEEAVVGPPKKRTKKTNEATSETSIMAAPIVTPIMAYPPRSTSLTGSNQLEQSNMIVALPCLGEETPTVAPKMTKSKTKGKPSCSSTPGSPAMSTRSKNKSPAMGTRSKRKLMD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03280 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0018600 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005970 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017880 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017780 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0205000 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017910 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0236000 | SBH | 0 | 0 | 0.004243 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015800 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017750 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015860 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003570 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000400 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017850 | RBH | 0.0 | 0.0 | 0.0 |
