Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_08g0000740 | OGI:08001420 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr08:583334-586588 | ||||||||
| Gene Symbol | Rf6 | ||||||||||
| DNA seq | ATTCTTCTTCCTCCTAATGCGCTCACTGGTCACTGCCCACCCAGATTCCTCCGCCGGCGCCGGCGCCGGCAGCGGCAGCGGCGGCGGCAGCGTCGGCGGGGTACAAAGACGCTCCAACCTGACGAGCGGTCGCCTTCCTCCCAACCCCACCAAGCCCGCACGGGAGGGAGGGAGGGAGGGAGGGAGCCCTCTCTCAAGCAAGTCCAGGCCGGCCATGTCGTCACGCCGTGTCCGCGTCACCGGCCTTGGGCGACCCGACGCCGGCGTCTCGCGCACAAAGAAGCAGCAGCAGAATCAGGGTCTTCCTCGGCAACATCAACAGCAACAGGAAGCTGGTTggtggtggacgagctggtagggagcacgctcaccacctgttcgacgaattgcttcgccgagacaccacctccatcttcgacctgaacagcgccctctccgccgtcgccagtgaaagccccgccgtcgctctctccctcttcaaccgcatgccccgagccgacttatgcacgtacagcatcgtcattggctgctgcagccgcgccggccacttggacctcgctttcgccgccctcggccgtgtcattaggactggatggacggcgcaagcaatcacctgcagtcctctgctcaagggcctctgccatgacaagaggaccagcgatgcaatggacattgcgctgcgacgaatgcctgccctgggttgcacgccgaatgcattctcctacaacatccttctcaagggcctctgcgatgaaaacaggagtcaacaagctctccacctactccacacgatgatggctgatgatactagaggaggatgcccacccgacgtggtttcatacaccacagtcatcaacggcttgcttagagagggtcagctggacaaagcttattgcctgtttgatgaaatgttggatcaggggatgtcgcctaattgcatcacgtataattgtcttttgcatggatattgctcatcaggaaagcccAaagaggccattgggattttcagaaagatgtgcagagatggtgttgaaccggatgtcgtcacttataacacgctcatggtctatctctgcaagaatggaagatccatggaagctagaaaagtttttgattctatggtcaagaagggccacaagcctgacagttctatatacggtactctgcttcatgggtatgctactgaaggatatcttgttcagatgcaccaactcttggatgtgatggtacgaaacggtacgcaacctgatcactacatctttaacatattaataggcgcatacgctaaacatggaatggtagatgaggccgtgcttgcatttagcaaaatgaggcagcaaggattgcaccctaatatagtcacctatggaacagtAatggacgcgctttgcagggtaggcaaagtggatgatgctatgtcccaattcgacaggctcatctctgaaggactaactcctaatggtgttgtttttagaaccttaattcatggcctctgtgcctgtgataaatgggacaaggctgaggagttggctgttgaaatgatcggtcgaggcatctgtcccgacaccattttcttcaacacattgttgaaccaccaatgcaaagaaggaatggttacaagagccaaaaacatctttgatttgatggtacgcgtagatgtgcagcgtgatgtcattacatacaccacactcatagatggatattgcttagatggtaaggtggatgaagcaacaaagttacttgaaggtatggtgttagatggggtgaaacctaatgaagttacctataataccattattaatggttactgtaagaacggtaggatagaggatgcatgttctcttttcagacagatggcaagcaagggtgttaatcctggcattgttacctatagcacaatcctccacgggctgtttcagactagaagaattgcagccgcaaaagaactctatctctggatgattaaaagtgggataaagtttgatatcggcacatacaacataatccttcaaggactttgccaaaacaattgcactgatgatgccctccgaatgtttcacaacctatgcttgattgatttccaccttcagaataggacttttaacattatgattgatgcgttacttaaaggtggcaggcatgatgaagctaaggatctgtttgcttctctcttggctagaggtttagtgccgaatgttgtgacctactggttaatgatgaaaagtttgatagaacaagggttgctagaagagttggatgatttatttctttctttggagaagaatggttgtacagctaactcccgaatgctaaatgctttagttggaaagttactacagaaaggggaggtacgcaaggctggggtttatctctccaaaattgatgAaaataacttctcccttgaagcttccacggctgagtcgctggtttttctggtttcaagtggcaaatacgaccaacatataaattatatccctgaaaagtatcgtcctactgcgaaatccagggctgtttttagtcAaaaaaaaaatccaGggctgtttgatgctgccggtagctatggagttgtaactagactttattcttcttcttatatcgaattagttgtgtaaagatgacattctggagctacatgatgggagatttctctctctctctctctctctctagcatgagtttttcagaagctcttttgcttgcaactgcttattgcccacgagtaatgcttcaacaatctctctgtaacattgagatcaacccagatttaagctggtaatttccaaggggtatcaattcctgcgatctctgctacaatggctggcagctcagttgttttgtactaggatgcaacctatgtttcagaaatagccagtttcagtctactcactgatcaatctccactggatactatctactaaccagcacaatcacaagctacctggacggtttctcaagcagaaggttcacttacacacaaacttcaggaaagtgacagcttccgcttCctccttgctatgctatttgtttgtatcagttcttgcatattctactcagcatagagcccaaacaccatacatgaccacttaaagaacttaccaacagtatcaaacacatcaatatctcatggaagaacatcagaatgattcctcaccccccAaaaaaaatacaagttgcagagaaattcatgaacatctgtgcagaacctttctattttcacaggggtgcagaactaatcttaacagtgtagtctcataa
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| CDS seq | ATGCGCTCACTGGTCACTGCCCACCCAGATTCCTCCGCCGGCGCCGGCGCCGGCAGCGGCAGCGGCGGCGGCAGCGTCGGCGGGGTACAAAGACGCTCCAACCTGACGAGCGGTCGCCTTCCTCCCAACCCCACCAAGCCCGCACGGGAGGGAGGGAGGGAGGGAGGGAGCCCTCTCTCAAGCAAGTCCAGGCCGGCCATGTCGTCACGCCGTGTCCGCGTCACCGGCCTTGGGCGACCCGACGCCGGCGTCTCGCGCACAAAGAAGCAGCAGCAGAATCAGGGTCTTCCTCGGCAACATCAACAGCAACAGGAAGCTGGTTggtggtggacgagctgccgcgccggccacttggacctcgctttcgccgccctcggccgtgtcattaggactggatggacggcgcaagcaatcacctgcagtcctctgctcaagggcctctgccatgacaagaggaccagcgatgcaatggacattgcgctgcgacgaatgcctgccctgggttgcacgccgaatgcattctcctacaacatccttctcaagggcctctgcgatgaaaacaggagtcaacaagctctccacctactccacacgatgatggctgatgatactagaggaggatgcccacccgacgtggtttcatacaccacagtcatcaacggcttgcttagagagggtcagctggacaaagcttattgcctgtttgatgaaatgttggatcaggggatgtcgcctaattgcatcacgtataattgtcttttgcatggatattgctcatcaggaaagcccAaagaggccattgggattttcagaaagatgtgcagagatggtgttgaaccggatgtcgtcacttataacacgctcatggtctatctctgcaagaatggaagatccatggaagctagaaaagtttttgattctatggtcaagaagggccacaagcctgacagttctatatacggtactctgcttcatgggtatgctactgaaggatatcttgttcagatgcaccaactcttggatgtgatggtacgaaacggtacgcaacctgatcactacatctttaacatattaataggcgcatacgctaaacatggaatggtagatgaggccgtgcttgcatttagcaaaatgaggcagcaaggattgcaccctaatatagtcacctatggaacagtAatggacgcgctttgcagggtaggcaaagtggatgatgctatgtcccaattcgacaggctcatctctgaaggactaactcctaatggtgttgtttttagaaccttaattcatggcctctgtgcctgtgataaatgggacaaggctgaggagttggctgttgaaatgatcggtcgaggcatctgtcccgacaccattttcttcaacacattgttgaaccaccaatgcaaagaaggaatggttacaagagccaaaaacatctttgatttgatggtacgcgtagatgtgcagcgtgatgtcattacatacaccacactcatagatggatattgcttagatggtaaggtggatgaagcaacaaagttacttgaaggtatggtgttagatggggtgaaacctaatgaagttacctataataccattattaatggttactgtaagaacggtaggatagaggatgcatgttctcttttcagacagatggcaagcaagggtgttaatcctggcattgttacctatagcacaatcctccacgggctgtttcagactagaagaattgcagccgcaaaagaactctatctctggatgattaaaagtgggataaagtttgatatcggcacatacaacataatccttcaaggactttgccaaaacaattgcactgatgatgccctccgaatgtttcacaacctatgcttgattgatttccaccttcagaataggacttttaacattatgattgatgcgttacttaaaggtggcaggcatgatgaagctaaggatctgtttgcttctctcttggctagaggtttagtgccgaatgttgtgacctactggttaatgatgaaaagtttgatagaacaagggttgctagaagagttggatgatttatttctttctttggagaagaatggttgtacagctaactcccgaatgctaaatgctttagttggaaagttactacagaaaggggaggggtgcagaactaatcttaacagtgtagtctcataa
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| Protein seq | MRSLVTAHPDSSAGAGAGSGSGGGSVGGVQRRSNLTSGRLPPNPTKPAREGGREGGSPLSSKSRPAMSSRRVRVTGLGRPDAGVSRTKKQQQNQGLPRQHQQQQEAGWWWTSCRAGHLDLAFAALGRVIRTGWTAQAITCSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAVLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPDTIFFNTLLNHQCKEGMVTRAKNIFDLMVRVDVQRDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVTYSTILHGLFQTRRIAAAKELYLWMIKSGIKFDIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEGCRTNLNSVVS |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_08g0000740 | OsNaBo_08g0000740.01 | Chr08 | 583334 | 586588 | + | NAM | ||
| CDS seq | ATGCGCTCACTGGTCACTGCCCACCCAGATTCCTCCGCCGGCGCCGGCGCCGGCAGCGGCAGCGGCGGCGGCAGCGTCGGCGGGGTACAAAGACGCTCCAACCTGACGAGCGGTCGCCTTCCTCCCAACCCCACCAAGCCCGCACGGGAGGGAGGGAGGGAGGGAGGGAGCCCTCTCTCAAGCAAGTCCAGGCCGGCCATGTCGTCACGCCGTGTCCGCGTCACCGGCCTTGGGCGACCCGACGCCGGCGTCTCGCGCACAAAGAAGCAGCAGCAGAATCAGGGTCTTCCTCGGCAACATCAACAGCAACAGGAAGCTGGTTggtggtggacgagctgccgcgccggccacttggacctcgctttcgccgccctcggccgtgtcattaggactggatggacggcgcaagcaatcacctgcagtcctctgctcaagggcctctgccatgacaagaggaccagcgatgcaatggacattgcgctgcgacgaatgcctgccctgggttgcacgccgaatgcattctcctacaacatccttctcaagggcctctgcgatgaaaacaggagtcaacaagctctccacctactccacacgatgatggctgatgatactagaggaggatgcccacccgacgtggtttcatacaccacagtcatcaacggcttgcttagagagggtcagctggacaaagcttattgcctgtttgatgaaatgttggatcaggggatgtcgcctaattgcatcacgtataattgtcttttgcatggatattgctcatcaggaaagcccAaagaggccattgggattttcagaaagatgtgcagagatggtgttgaaccggatgtcgtcacttataacacgctcatggtctatctctgcaagaatggaagatccatggaagctagaaaagtttttgattctatggtcaagaagggccacaagcctgacagttctatatacggtactctgcttcatgggtatgctactgaaggatatcttgttcagatgcaccaactcttggatgtgatggtacgaaacggtacgcaacctgatcactacatctttaacatattaataggcgcatacgctaaacatggaatggtagatgaggccgtgcttgcatttagcaaaatgaggcagcaaggattgcaccctaatatagtcacctatggaacagtAatggacgcgctttgcagggtaggcaaagtggatgatgctatgtcccaattcgacaggctcatctctgaaggactaactcctaatggtgttgtttttagaaccttaattcatggcctctgtgcctgtgataaatgggacaaggctgaggagttggctgttgaaatgatcggtcgaggcatctgtcccgacaccattttcttcaacacattgttgaaccaccaatgcaaagaaggaatggttacaagagccaaaaacatctttgatttgatggtacgcgtagatgtgcagcgtgatgtcattacatacaccacactcatagatggatattgcttagatggtaaggtggatgaagcaacaaagttacttgaaggtatggtgttagatggggtgaaacctaatgaagttacctataataccattattaatggttactgtaagaacggtaggatagaggatgcatgttctcttttcagacagatggcaagcaagggtgttaatcctggcattgttacctatagcacaatcctccacgggctgtttcagactagaagaattgcagccgcaaaagaactctatctctggatgattaaaagtgggataaagtttgatatcggcacatacaacataatccttcaaggactttgccaaaacaattgcactgatgatgccctccgaatgtttcacaacctatgcttgattgatttccaccttcagaataggacttttaacattatgattgatgcgttacttaaaggtggcaggcatgatgaagctaaggatctgtttgcttctctcttggctagaggtttagtgccgaatgttgtgacctactggttaatgatgaaaagtttgatagaacaagggttgctagaagagttggatgatttatttctttctttggagaagaatggttgtacagctaactcccgaatgctaaatgctttagttggaaagttactacagaaaggggaggggtgcagaactaatcttaacagtgtagtctcataa
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| Protein seq | MRSLVTAHPDSSAGAGAGSGSGGGSVGGVQRRSNLTSGRLPPNPTKPAREGGREGGSPLSSKSRPAMSSRRVRVTGLGRPDAGVSRTKKQQQNQGLPRQHQQQQEAGWWWTSCRAGHLDLAFAALGRVIRTGWTAQAITCSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAVLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPDTIFFNTLLNHQCKEGMVTRAKNIFDLMVRVDVQRDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVTYSTILHGLFQTRRIAAAKELYLWMIKSGIKFDIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANSRMLNALVGKLLQKGEGCRTNLNSVVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.746474 | 3.356310 | 0.711408 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0110200 | RBH | 0.135294 | 0.328823 | 0.213530 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01870 | RBH | 0.090676 | 0.219187 | 0.054476 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0110200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000730 | RBH | 0.291244 | 1.726506 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000750 | RBH | 0.049277 | 0.402946 | 0.113059 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000750 | RBH | 0.0 | 0.855183 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000740 | RBH | 0.026354 | 0.065323 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000720 | RBH | 0.0 | 1.337892 | 1.228732 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0067000 | SBH | 0 | 7.405181 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0000680 | RBH | 0.145263 | 0.044086 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0072800 | RBH | 0.086424 | 0.1564015 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000800 | RBH | 0.152268 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000720 | RBH | 0.031886 | 2.229146 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000740 | RBH | 0.903618 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000730 | RBH | 0.0 | 0.0 | 0.088304 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0000730 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000740 | RBH | 0.180219 | 0.0 | 0.136112 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000540 | SBH | 0.000000 | 1.718111 | 0.170857 |
