Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0067000 | OGI:08001040 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:4474747-4475172 | ||||||||
| Gene Symbol | Rf6 | ||||||||||
| DNA seq | TCACATCACATCCAAGAGTTGGTGCATCTCAACAAGAGATCCTTCACTAGCATACCCATGAAGCAGAGTACCGTATGTAGCACTATTAGGCTTGTGGCCCCTCTTGACCATAGAATCAAAGATCTTTCTAGCTTCCATGGATCTTCCATTCTTGCAGAGATAGTCCATGAGCATGTTATAAGTGACTACATTCGGTTCAACACCATCTCTGCACATTTTTCTGAAAATCCCAATGGCCTCTTTGGGCTTTCCCGATGAGCAATATCCATGCAAAAGACTATTGTACGTGATGCAATCAGGCATAACACCATTCTTGACCATCCTAGTAAGGACCTCCCTAGCCTTTTCCATTGCTTGAGCCTTGGATAGGGTAGCGACGATTGAGCTGTAAGTGACAACATTAGGCGACATCCCCTGATCCAGCAT
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| CDS seq | ATGCTGGATCAGGGGATGTCGCCTAATGTTGTCACTTACAGCTCAATCGTCGCTACCCTATCCAAGGCTCAAGCAATGGAAAAGGCTAGGGAGGTCCTTACTAGGATGGTCAAGAATGGTGTTATGCCTGATTGCATCACGTACAATAGTCTTTTGCATGGATATTGCTCATCGGGAAAGCCCAAAGAGGCCATTGGGATTTTCAGAAAAATGTGCAGAGATGGTGTTGAACCGAATGTAGTCACTTATAACATGCTCATGGACTATCTCTGCAAGAATGGAAGATCCATGGAAGCTAGAAAGATCTTTGATTCTATGGTCAAGAGGGGCCACAAGCCTAATAGTGCTACATACGGTACTCTGCTTCATGGGTATGCTAGTGAAGGATCTCTTGTTGAGATGCACCAACTCTTGGATGTGATGTGA
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| Protein seq | MLDQGMSPNVVTYSSIVATLSKAQAMEKAREVLTRMVKNGVMPDCITYNSLLHGYCSSGKPKEAIGIFRKMCRDGVEPNVVTYNMLMDYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYASEGSLVEMHQLLDVM |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0067000 | OsMH63_08T0067000.1 | Chr08 | 4474747 | 4475172 | - | maker | ||
| CDS seq | ATGCTGGATCAGGGGATGTCGCCTAATGTTGTCACTTACAGCTCAATCGTCGCTACCCTATCCAAGGCTCAAGCAATGGAAAAGGCTAGGGAGGTCCTTACTAGGATGGTCAAGAATGGTGTTATGCCTGATTGCATCACGTACAATAGTCTTTTGCATGGATATTGCTCATCGGGAAAGCCCAAAGAGGCCATTGGGATTTTCAGAAAAATGTGCAGAGATGGTGTTGAACCGAATGTAGTCACTTATAACATGCTCATGGACTATCTCTGCAAGAATGGAAGATCCATGGAAGCTAGAAAGATCTTTGATTCTATGGTCAAGAGGGGCCACAAGCCTAATAGTGCTACATACGGTACTCTGCTTCATGGGTATGCTAGTGAAGGATCTCTTGTTGAGATGCACCAACTCTTGGATGTGATGTGA
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| Protein seq | MLDQGMSPNVVTYSSIVATLSKAQAMEKAREVLTRMVKNGVMPDCITYNSLLHGYCSSGKPKEAIGIFRKMCRDGVEPNVVTYNMLMDYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYASEGSLVEMHQLLDVM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 7.405181 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0153600 | SBH | 0.815949 | 0.917387 | 1.756748 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01650 | RBH | 0.061606 | 0.125462 | 0.057316 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0153600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025420 | SBH | 1.611732 | 5.722619 | 6.478137 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005990 | SBH | 0.856347 | 2.007637 | 5.727568 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006070 | SBH | 6.963283 | 5.353433 | 19.397356 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005920 | SBH | 2.071781 | 0.132515 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003400 | SBH | 1.472877 | 1.632114 | 3.749681 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0056000 | RBH | 0.85073 | 3.0592805 | 1.5960155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005630 | SBH | 4.280291 | 0.418953 | 1.391391 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0006600 | RBH | 0.1460065 | 0.193994 | 2.062234 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005690 | SBH | 0.863107 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005760 | SBH | 2.954459 | 9.674504 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005610 | SBH | 20.855667 | 9.120240 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005910 | SBH | 5.093614 | 0.460545 | 3.330294 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005730 | SBH | 2.198063 | 2.308995 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005710 | SBH | 3.033113 | 0.687536 | 4.770236 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000540 | RBH | 0.000000 | 1.718111 | 0.170857 |
